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1.
Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections.
PLoS Pathog
; 20(4): e1012131, 2024 Apr.
Article
in English
| MEDLINE | ID: mdl-38626244
2.
Genomic Surveillance for SARS-CoV-2 Variants: Circulation of Omicron Lineages - United States, January 2022-May 2023.
MMWR Morb Mortal Wkly Rep
; 72(24): 651-656, 2023 Jun 16.
Article
in English
| MEDLINE | ID: mdl-37319011
3.
SARS-CoV-2 Delta-Omicron Recombinant Viruses, United States.
Emerg Infect Dis
; 28(7): 1442-1445, 2022 07.
Article
in English
| MEDLINE | ID: mdl-35551714
4.
Genomic Surveillance for SARS-CoV-2 Variants: Predominance of the Delta (B.1.617.2) and Omicron (B.1.1.529) Variants - United States, June 2021-January 2022.
MMWR Morb Mortal Wkly Rep
; 71(6): 206-211, 2022 02 11.
Article
in English
| MEDLINE | ID: mdl-35143464
5.
Impact of Immune Priming, Vaccination, and Infection on Influenza A(H3N2) Antibody Landscapes in Children.
J Infect Dis
; 224(3): 469-480, 2021 08 02.
Article
in English
| MEDLINE | ID: mdl-33090202
6.
Shifting Clade Distribution, Reassortment, and Emergence of New Subtypes of Highly Pathogenic Avian Influenza A(H5) Viruses Collected from Vietnamese Poultry from 2012 to 2015.
J Virol
; 91(5)2017 03 01.
Article
in English
| MEDLINE | ID: mdl-28003481
7.
Preliminary Evaluation of the Effect of Investigational Ebola Virus Disease Treatments on Viral Genome Sequences.
J Infect Dis
; 214(suppl 3): S333-S341, 2016 10 15.
Article
in English
| MEDLINE | ID: mdl-27521366
8.
Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler.
BMC Genomics
; 17: 708, 2016 09 05.
Article
in English
| MEDLINE | ID: mdl-27595578
9.
Exploiting mid-range DNA patterns for sequence classification: binary abstraction Markov models.
Nucleic Acids Res
; 40(11): 4765-73, 2012 Jun.
Article
in English
| MEDLINE | ID: mdl-22344692
10.
Critical association of ncRNA with introns.
Nucleic Acids Res
; 39(6): 2357-66, 2011 Mar.
Article
in English
| MEDLINE | ID: mdl-21071396
11.
Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections.
bioRxiv
; 2023 Oct 25.
Article
in English
| MEDLINE | ID: mdl-37961583
12.
Novel and extendable genotyping system for human respiratory syncytial virus based on whole-genome sequence analysis.
Influenza Other Respir Viruses
; 16(3): 492-500, 2022 05.
Article
in English
| MEDLINE | ID: mdl-34894077
13.
Erratum to: Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler.
BMC Genomics
; 17(1): 801, 2016 10 13.
Article
in English
| MEDLINE | ID: mdl-27737640
14.
Avian Influenza A Viruses Reassort and Diversify Differently in Mallards and Mammals.
Viruses
; 13(3)2021 03 19.
Article
in English
| MEDLINE | ID: mdl-33808674
15.
Evolution of genomic sequence inhomogeneity at mid-range scales.
BMC Genomics
; 10: 513, 2009 Nov 05.
Article
in English
| MEDLINE | ID: mdl-19891785
16.
Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome.
Sci Rep
; 8(1): 14408, 2018 09 26.
Article
in English
| MEDLINE | ID: mdl-30258076
17.
Author Correction: Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome.
Sci Rep
; 8(1): 15746, 2018 Oct 19.
Article
in English
| MEDLINE | ID: mdl-30341398
18.
Antigenic characterization of highly pathogenic avian influenza A(H5N1) viruses with chicken and ferret antisera reveals clade-dependent variation in hemagglutination inhibition profiles.
Emerg Microbes Infect
; 7(1): 100, 2018 May 31.
Article
in English
| MEDLINE | ID: mdl-29855467
19.
Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors.
Cell Rep
; 22(5): 1159-1168, 2018 01 30.
Article
in English
| MEDLINE | ID: mdl-29386105
20.
LABEL: fast and accurate lineage assignment with assessment of H5N1 and H9N2 influenza A hemagglutinins.
PLoS One
; 9(1): e86921, 2014.
Article
in English
| MEDLINE | ID: mdl-24466291