Search | Virtual Health Library

1.

Eukaryotic core promoters and the functional basis of transcription initiation.

Haberle, Vanja; Stark, Alexander.

Nat Rev Mol Cell Biol ; 19(10): 621-637, 2018 10.

Article in English | MEDLINE | ID: mdl-29946135

2.

Coordinating the human looks.

Haberle, Vanja; Stark, Alexander.

Cell ; 163(1): 24-6, 2015 Sep 24.

Article in English | MEDLINE | ID: mdl-26406365

3.

Targeted design of synthetic enhancers for selected tissues in the Drosophila embryo.

de Almeida, Bernardo P; Schaub, Christoph; Pagani, Michaela; Secchia, Stefano; Furlong, Eileen E M; Stark, Alexander.

Nature ; 626(7997): 207-211, 2024 Feb.

Article in English | MEDLINE | ID: mdl-38086418

4.

Proteome-scale identification of transcriptional activators in human cells.

Nemcko, Filip; Stark, Alexander.

Mol Cell ; 82(3): 497-499, 2022 02 03.

Article in English | MEDLINE | ID: mdl-35120646

5.

Developmental and housekeeping transcriptional programs in Drosophila require distinct chromatin remodelers.

Hendy, Oliver; Serebreni, Leonid; Bergauer, Katharina; Muerdter, Felix; Huber, Lukas; Nemcko, Filip; Stark, Alexander.

Mol Cell ; 82(19): 3598-3612.e7, 2022 10 06.

Article in English | MEDLINE | ID: mdl-36113480

6.

Differential cofactor dependencies define distinct types of human enhancers.

Neumayr, Christoph; Haberle, Vanja; Serebreni, Leonid; Karner, Katharina; Hendy, Oliver; Boija, Ann; Henninger, Jonathan E; Li, Charles H; Stejskal, Karel; Lin, Gen; Bergauer, Katharina; Pagani, Michaela; Rath, Martina; Mechtler, Karl; Arnold, Cosmas D; Stark, Alexander.

Nature ; 606(7913): 406-413, 2022 06.

Article in English | MEDLINE | ID: mdl-35650434

7.

Systematic identification and characterization of repressive domains in Drosophila transcription factors.

Klaus, Loni; de Almeida, Bernardo P; Vlasova, Anna; Nemcko, Filip; Schleiffer, Alexander; Bergauer, Katharina; Hofbauer, Lorena; Rath, Martina; Stark, Alexander.

EMBO J ; 42(3): e112100, 2023 02 01.

Article in English | MEDLINE | ID: mdl-36545802

8.

Functionally distinct promoter classes initiate transcription via different mechanisms reflected in focused versus dispersed initiation patterns.

Serebreni, Leonid; Pleyer, Lisa-Marie; Haberle, Vanja; Hendy, Oliver; Vlasova, Anna; Loubiere, Vincent; Nemcko, Filip; Bergauer, Katharina; Roitinger, Elisabeth; Mechtler, Karl; Stark, Alexander.

EMBO J ; 42(10): e113519, 2023 05 15.

Article in English | MEDLINE | ID: mdl-37013908

9.

Enhancers display constrained sequence flexibility and context-specific modulation of motif function.

Reiter, Franziska; de Almeida, Bernardo P; Stark, Alexander.

Genome Res ; 33(3): 346-358, 2023 03.

Article in English | MEDLINE | ID: mdl-36941077

10.

Assessing sufficiency and necessity of enhancer activities for gene expression and the mechanisms of transcription activation.

Catarino, Rui R; Stark, Alexander.

Genes Dev ; 32(3-4): 202-223, 2018 02 01.

Article in English | MEDLINE | ID: mdl-29491135

11.

Transcriptional cofactors display specificity for distinct types of core promoters.

Haberle, Vanja; Arnold, Cosmas D; Pagani, Michaela; Rath, Martina; Schernhuber, Katharina; Stark, Alexander.

Nature ; 570(7759): 122-126, 2019 06.

Article in English | MEDLINE | ID: mdl-31092928

12.

Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary.

Malone, Colin D; Brennecke, Julius; Dus, Monica; Stark, Alexander; McCombie, W Richard; Sachidanandam, Ravi; Hannon, Gregory J.

Cell ; 137(3): 522-35, 2009 May 01.

Article in English | MEDLINE | ID: mdl-19395010

13.

Genomic surveillance of SARS-CoV-2 evolution by a centralised pipeline and weekly focused sequencing, Austria, January 2021 to March 2023.

Frank, Olga; Balboa, David Acitores; Novatchkova, Maria; Özkan, Ezgi; Strobl, Marcus Martin; Yelagandula, Ramesh; Albanese, Tanino Guiseppe; Endler, Lukas; Amman, Fabian; Felsenstein, Vera; Gavrilovic, Milanka; Acosta, Melanie; Patocka, Timothej; Vogt, Alexander; Tamir, Ido; Klikovits, Julia; Zoufaly, Alexander; Seitz, Tamara; Födinger, Manuela; Bergthaler, Andreas; Indra, Alexander; Schmid, Daniela; Klimek, Peter; Stark, Alexander; Allerberger, Franz; Benka, Bernhard; Reich, Katharina; Cochella, Luisa; Elling, Ulrich.

Euro Surveill ; 29(23)2024 Jun.

Article in English | MEDLINE | ID: mdl-38847119

14.

A reversible haploid mouse embryonic stem cell biobank resource for functional genomics.

Elling, Ulrich; Wimmer, Reiner A; Leibbrandt, Andreas; Burkard, Thomas; Michlits, Georg; Leopoldi, Alexandra; Micheler, Thomas; Abdeen, Dana; Zhuk, Sergei; Aspalter, Irene M; Handl, Cornelia; Liebergesell, Julia; Hubmann, Maria; Husa, Anna-Maria; Kinzer, Manuela; Schuller, Nicole; Wetzel, Ellen; van de Loo, Nina; Martinez, Jorge Arturo Zepeda; Estoppey, David; Riedl, Ralph; Yang, Fengtang; Fu, Beiyuan; Dechat, Thomas; Ivics, Zoltán; Agu, Chukwuma A; Bell, Oliver; Blaas, Dieter; Gerhardt, Holger; Hoepfner, Dominic; Stark, Alexander; Penninger, Josef M.

Nature ; 550(7674): 114-118, 2017 10 05.

Article in English | MEDLINE | ID: mdl-28953874

15.

A high-throughput method to identify trans-activation domains within transcription factor sequences.

Arnold, Cosmas D; Nemcko, Filip; Woodfin, Ashley R; Wienerroither, Sebastian; Vlasova, Anna; Schleiffer, Alexander; Pagani, Michaela; Rath, Martina; Stark, Alexander.

EMBO J ; 37(16)2018 08 15.

Article in English | MEDLINE | ID: mdl-30006452

16.

Hormone-responsive enhancer-activity maps reveal predictive motifs, indirect repression, and targeting of closed chromatin.

Shlyueva, Daria; Stelzer, Christoph; Gerlach, Daniel; Yáñez-Cuna, J Omar; Rath, Martina; Boryn, Lukasz M; Arnold, Cosmas D; Stark, Alexander.

Mol Cell ; 54(1): 180-192, 2014 Apr 10.

Article in English | MEDLINE | ID: mdl-24685159

17.

Probing Magnetic Defects in Ultra-Scaled Nanowires with Optically Detected Spin Resonance in Nitrogen-Vacancy Center in Diamond.

Celano, Umberto; Zhong, Hai; Ciubotaru, Florin; Stoleriu, Laurentiu; Stark, Alexander; Rickhaus, Peter; de Oliveira, Felipe Fávaro; Munsch, Mathieu; Favia, Paola; Korytov, Maxim; Van Marcke, Patricia; Maletinsky, Patrick; Adelmann, Christoph; van der Heide, Paul.

Nano Lett ; 21(24): 10409-10415, 2021 12 22.

Article in English | MEDLINE | ID: mdl-34882420

18.

A conserved role for Snail as a potentiator of active transcription.

Rembold, Martina; Ciglar, Lucia; Yáñez-Cuna, J Omar; Zinzen, Robert P; Girardot, Charles; Jain, Ankit; Welte, Michael A; Stark, Alexander; Leptin, Maria; Furlong, Eileen E M.

Genes Dev ; 28(2): 167-81, 2014 Jan 15.

Article in English | MEDLINE | ID: mdl-24402316

19.

Resolving systematic errors in widely used enhancer activity assays in human cells.

Muerdter, Felix; Boryn, Lukasz M; Woodfin, Ashley R; Neumayr, Christoph; Rath, Martina; Zabidi, Muhammad A; Pagani, Michaela; Haberle, Vanja; Kazmar, Tomás; Catarino, Rui R; Schernhuber, Katharina; Arnold, Cosmas D; Stark, Alexander.

Nat Methods ; 15(2): 141-149, 2018 02.

Article in English | MEDLINE | ID: mdl-29256496

20.

Transcriptional regulators form diverse groups with context-dependent regulatory functions.

Stampfel, Gerald; Kazmar, Tomás; Frank, Olga; Wienerroither, Sebastian; Reiter, Franziska; Stark, Alexander.

Nature ; 528(7580): 147-51, 2015 Dec 03.

Article in English | MEDLINE | ID: mdl-26550828

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