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Am J Respir Crit Care Med ; 186(4): 359-68, 2012 Aug 15.
Article in English | MEDLINE | ID: mdl-22679008

ABSTRACT

RATIONALE: An increased tricuspid regurgitation jet velocity (TRV > 2.5 m/s) and pulmonary hypertension defined by right heart catheterization both independently confer increased mortality in sickle cell disease (SCD). OBJECTIVES: We explored the usefulness of peripheral blood mononuclear cell-derived gene signatures as biomarkers for an elevated TRV in SCD. METHODS: Twenty-seven patients with SCD underwent echocardiography and peripheral blood mononuclear cell isolation for expression profiling and 112 patients with SCD were genotyped for single-nucleotide polymorphisms. MEASUREMENTS AND MAIN RESULTS: Genome-wide gene and miRNA expression profiles were correlated against TRV, yielding 631 transcripts and 12 miRNAs. Support vector machine analysis identified a 10-gene signature including GALNT13 (encoding polypeptide N-acetylgalactosaminyltransferase 13) that discriminates patients with and without increased TRV with 100% accuracy. This finding was then validated in a cohort of patients with SCD without (n = 10) and with pulmonary hypertension (n = 10, 90% accuracy). Increased TRV-related miRNAs revealed strong in silico binding predictions of miR-301a to GALNT13 corroborated by microarray analyses demonstrating an inverse correlation between their expression. A genetic association study comparing patients with an elevated (n = 49) versus normal (n = 63) TRV revealed five significant single-nucleotide polymorphisms within GALNT13 (P < 0.005), four trans-acting (P < 2.1 × 10(-7)) and one cis-acting (P = 0.6 × 10(-4)) expression quantitative trait locus upstream of the adenosine-A2B receptor gene (ADORA2B). CONCLUSIONS: These studies validate the clinical usefulness of genomic signatures as potential biomarkers and highlight ADORA2B and GALNT13 as potential candidate genes in SCD-associated elevated TRV.


Subject(s)
Anemia, Sickle Cell/genetics , Anemia, Sickle Cell/physiopathology , N-Acetylgalactosaminyltransferases/genetics , Receptor, Adenosine A2B/genetics , Tricuspid Valve Insufficiency/genetics , Tricuspid Valve Insufficiency/physiopathology , Adult , Anemia, Sickle Cell/diagnostic imaging , Cardiac Catheterization , Cohort Studies , Echocardiography, Doppler/methods , Female , Gene Expression Profiling/methods , Genetic Markers/genetics , Genome-Wide Association Study/methods , Humans , Hypertension, Pulmonary/diagnostic imaging , Hypertension, Pulmonary/genetics , Hypertension, Pulmonary/physiopathology , Male , Microarray Analysis/methods , Polymorphism, Single Nucleotide/genetics , Pulmonary Artery/diagnostic imaging , Pulmonary Artery/physiopathology , Reproducibility of Results , Support Vector Machine , Tricuspid Valve Insufficiency/diagnostic imaging , Polypeptide N-acetylgalactosaminyltransferase
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