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1.
J Nat Prod ; 87(4): 722-732, 2024 Apr 26.
Article in English | MEDLINE | ID: mdl-38408345

ABSTRACT

The first detailed phytochemical analysis of the cannabigerol (CBG)-rich chemotype IV of Cannabis sativa L. resulted in the isolation of the expected cannabigerolic acid/cannabigerol (CBGA/CBG) and cannabidiolic acid/cannabidiol (CBDA/CBD) and of nine new phytocannabinoids (5-13), which were fully characterized by HR-ESIMS and 1D and 2D NMR. These included mono- or dihydroxylated CBGA/CBG analogues, a congener with a truncated side chain (10), cyclocannabigerol B (11), and the CBD derivatives named cannabifuranols (12 and 13). Cyclocannabigerol B and cannabifuranols are characterized by a novel phytocannabinoid structural architecture. The isolated phytocannabinoids were assayed on the receptor channels TRPA1 and TRPM8, unveiling a potent dual TRPA1 agonist/TRPM8 antagonist profile for compounds 6, 7, and 14. Chiral separation of the two enantiomers of 5 resulted in the discovery of a synergistic effect of the two enantiomers on TRPA1.


Subject(s)
Cannabinoids , Cannabis , TRPA1 Cation Channel , TRPM Cation Channels , Transient Receptor Potential Channels , Cannabis/chemistry , TRPA1 Cation Channel/antagonists & inhibitors , Cannabinoids/pharmacology , Cannabinoids/chemistry , Cannabinoids/isolation & purification , TRPM Cation Channels/antagonists & inhibitors , Molecular Structure , Transient Receptor Potential Channels/antagonists & inhibitors , Transient Receptor Potential Channels/drug effects , Phytochemicals/pharmacology , Phytochemicals/isolation & purification , Phytochemicals/chemistry , Humans , Cannabidiol/pharmacology , Cannabidiol/chemistry , Calcium Channels/metabolism
2.
J Am Chem Soc ; 145(28): 15094-15108, 2023 07 19.
Article in English | MEDLINE | ID: mdl-37401816

ABSTRACT

Pharmacological modulation of cannabinoid receptor type 2 (CB2R) holds promise for the treatment of neuroinflammatory disorders, such as Alzheimer's disease. Despite the importance of CB2R, its expression and downstream signaling are insufficiently understood in disease- and tissue-specific contexts. Herein, we report the first ligand-directed covalent (LDC) labeling of CB2R enabled by a novel synthetic strategy and application of platform reagents. The LDC modification allows visualization and study of CB2R while maintaining its ability to bind other ligands at the orthosteric site. We employed in silico docking and molecular dynamics simulations to guide probe design and assess the feasibility of LDC labeling of CB2R. We demonstrate selective, covalent labeling of a peripheral lysine residue of CB2R by exploiting fluorogenic O-nitrobenzoxadiazole (O-NBD)-functionalized probes in a TR-FRET assay. The rapid proof-of-concept validation with O-NBD probes inspired incorporation of advanced electrophiles suitable for experiments in live cells. To this end, novel synthetic strategies toward N-sulfonyl pyridone (N-SP) and N-acyl-N-alkyl sulfonamide (NASA) LDC probes were developed, which allowed covalent delivery of fluorophores suitable for cellular studies. The LDC probes were characterized by a radioligand binding assay and TR-FRET experiments. Additionally, the probes were applied to specifically visualize CB2R in conventional and imaging flow cytometry as well as in confocal fluorescence microscopy using overexpressing and endogenously expressing microglial live cells.


Subject(s)
Fluorescent Dyes , Signal Transduction , Ligands , Protein Binding , Fluorescent Dyes/chemistry , Receptors, Cannabinoid
3.
J Nat Prod ; 86(11): 2435-2447, 2023 11 24.
Article in English | MEDLINE | ID: mdl-37940359

ABSTRACT

An LC-MS/MS-guided analysis of the aerial parts of Glycyrrhiza foetida afforded new phenethyl (amorfrutin)- and alkyl (cannabis)-type phytocannabinoids (six and four compounds, respectively). The structural diversity of the new amorfrutins was complemented by the isolation of six known members and the synthesis of analogues modified on the aralkyl moiety. All of the compounds so obtained were assayed for agonist activity on PPARα and PPARγ nuclear receptors. Amorfrutin A (1) showed the highest agonist activity on PPARγ, amorfrutin H (7) selectively targeted PPARα, and amorfrutin E (4) behaved as a dual agonist, with the pentyl analogue of amorfrutin A (11) being inactive. Decarboxyamorfrutin A (2) was cytotoxic, and modifying its phenethyl moiety to a styryl or a phenylethynyl group retained this trait, suggesting an alternative biological scenario for these compounds. The putative binding modes of amorfrutins toward PPARα and PPARγ were obtained by a combined approach of molecular docking and molecular dynamics simulations, which provided insights on the structure-activity relationships of this class of compounds.


Subject(s)
Glycyrrhiza , Glycyrrhiza/chemistry , PPAR alpha/agonists , PPAR gamma/agonists , Molecular Docking Simulation , Chromatography, Liquid , Tandem Mass Spectrometry , Plant Components, Aerial , Molecular Structure
4.
Mar Drugs ; 21(2)2023 Jan 26.
Article in English | MEDLINE | ID: mdl-36827130

ABSTRACT

Peroxisome proliferator-activated receptors α, γ and ß/δ (PPARα, PPARγ, and PPARß/δ) are a family of ligand-activated transcriptional factors belonging to the superfamily of nuclear receptors regulating the expression of genes involved in lipid and carbohydrate metabolism, energy homeostasis, inflammation, and the immune response. For this reason, they represent attractive targets for the treatment of a variety of metabolic diseases and, more recently, for neurodegenerative disorders due to their emerging neuroprotective effects. The degree of activation, from partial to full, along with the selectivity toward the different isoforms, greatly affect the therapeutic efficacy and the safety profile of PPAR agonists. Thus, there is a high interest toward novel scaffolds with proper combinations of activity and selectivity. This review intends to provide an overview of the discovery, optimization, and structure-activity relationship studies on PPAR modulators from marine sources, along with the structural and computational studies that led to their identification and/or elucidation, and rationalization of their mechanisms of action.


Subject(s)
PPAR alpha , Transcription Factors , Transcription Factors/genetics , PPAR alpha/metabolism , PPAR gamma , Hypoglycemic Agents/pharmacology
5.
Int J Mol Sci ; 22(9)2021 May 05.
Article in English | MEDLINE | ID: mdl-34062987

ABSTRACT

Cannabidiol (CBD), the major nonpsychoactive Cannabis constituent, has been proposed for the treatment of a wide panel of neurological and neuropsychiatric disorders, including anxiety, schizophrenia, epilepsy and drug addiction due to the ability of its versatile scaffold to interact with diverse molecular targets that are not restricted to the endocannabinoid system. Albeit the molecular mechanisms responsible for the therapeutic effects of CBD have yet to be fully elucidated, many efforts have been devoted in the last decades to shed light on its complex pharmacological profile. In particular, an ever-increasing number of molecular targets linked to those disorders have been identified for this phytocannabinoid, along with the modulatory effects of CBD on their cascade signaling. In this view, here we will try to provide a comprehensive and up-to-date overview of the molecular basis underlying the therapeutic effects of CBD involved in the treatment of neurological and neuropsychiatric disorders.


Subject(s)
Cannabidiol/therapeutic use , Mental Disorders/drug therapy , Mental Disorders/genetics , Molecular Targeted Therapy , Animals , Cannabidiol/chemistry , Cannabidiol/pharmacology , Humans , Ion Channels/metabolism , Models, Molecular
6.
Int J Mol Sci ; 22(3)2021 Feb 02.
Article in English | MEDLINE | ID: mdl-33540826

ABSTRACT

Toll-like receptors (TLRs) are key receptors through which infectious and non-infectious challenges act with consequent activation of the inflammatory cascade that plays a critical function in various acute and chronic diseases, behaving as amplification and chronicization factors of the inflammatory response. Previous studies have shown that synthetic analogues of lipid A based on glucosamine with few chains of unsaturated and saturated fatty acids, bind MD-2 and inhibit TLR4 receptors. These synthetic compounds showed antagonistic activity against TLR4 activation in vitro by LPS, but little or no activity in vivo. This study aimed to show the potential use of N-palmitoyl-D-glucosamine (PGA), a bacterial molecule with structural similarity to the lipid A component of LPS, which could be useful for preventing LPS-induced tissue damage or even peripheral neuropathies. Molecular docking and molecular dynamics simulations showed that PGA stably binds MD-2 with a MD-2/(PGA)3 stoichiometry. Treatment with PGA resulted in the following effects: (i) it prevented the NF-kB activation in LPS stimulated RAW264.7 cells; (ii) it decreased LPS-induced keratitis and corneal pro-inflammatory cytokines, whilst increasing anti-inflammatory cytokines; (iii) it normalized LPS-induced miR-20a-5p and miR-106a-5p upregulation and increased miR-27a-3p levels in the inflamed corneas; (iv) it decreased allodynia in peripheral neuropathy induced by oxaliplatin or formalin, but not following spared nerve injury of the sciatic nerve (SNI); (v) it prevented the formalin- or oxaliplatin-induced myelino-axonal degeneration of sciatic nerve. SIGNIFICANCE STATEMENT We report that PGA acts as a TLR4 antagonist and this may be the basis of its potent anti-inflammatory activity. Being unique because of its potency and stability, as compared to other similar congeners, PGA can represent a tool for the optimization of new TLR4 modulating drugs directed against the cytokine storm and the chronization of inflammation.


Subject(s)
Analgesics/therapeutic use , Anti-Inflammatory Agents/therapeutic use , Glycolipids/therapeutic use , Hyperalgesia/prevention & control , Keratitis/drug therapy , Neuralgia/drug therapy , Toll-Like Receptor 4/antagonists & inhibitors , Analgesics/pharmacology , Animals , Anti-Inflammatory Agents/pharmacology , Calcium Signaling/drug effects , Cytokines/metabolism , Drug Evaluation, Preclinical , Glycolipids/pharmacology , HEK293 Cells , Humans , Hyperalgesia/etiology , Keratitis/chemically induced , Keratitis/pathology , Lipopolysaccharides/toxicity , Lymphocyte Antigen 96/metabolism , Male , Mice , MicroRNAs/genetics , Models, Molecular , Nociceptors/drug effects , Nociceptors/physiology , Protein Conformation , RAW 264.7 Cells , Random Allocation , Sciatic Nerve/injuries , TRPA1 Cation Channel/metabolism
7.
J Nat Prod ; 83(11): 3476-3481, 2020 11 25.
Article in English | MEDLINE | ID: mdl-33136399

ABSTRACT

As part of a study on triterpenoid conjugates, the dietary pentacyclic triterpenoids oleanolic (2a) and ursolic acids (3a) were coupled with vanillamine, and the resulting amides (2b and 3b, respectively) were assayed for activity on the vanilloid receptor TRPV1. Despite a structural difference limited to the location of a methyl group in their conformationally rigid pentacyclic core, oleanoloyl vanillamide dramatically outperformed ursoloyl vanillamide in terms of potency (EC50 = 35 ± 2 nM for 2b and 5.4 ± 2.3 µM for 3b). Using molecular docking and dynamics, this difference was translated into distinct accommodation modes at the TRPV1 vanillyl ligand pocket, suggesting a critical role of a C-H πphenyl interaction between the triterpenoid C-29 methyl and Phe591 of TRPV1. Because the molecular mechanisms underlying the activation process of transient receptor channels (TRPs) remain to be fully elucidated, the observation of spatially restricted structure-activity information is of significant relevance to identify the molecular detail of TRPV1 ligand gating.


Subject(s)
Amides/chemistry , Drug Discovery , TRPV Cation Channels/drug effects , Triterpenes/pharmacology , HEK293 Cells , Humans , Molecular Docking Simulation , Triterpenes/chemistry
8.
Bioorg Chem ; 105: 104337, 2020 12.
Article in English | MEDLINE | ID: mdl-33113408

ABSTRACT

CXCR4 chemokine receptor represents an attractive pharmacological target due to its key role in cancer metastasis and inflammatory diseases. Starting from our previously-developed pharmacophoric model, we applied a combined computational and experimental approach that led to the identification of the hydantoin alkaloids parazoanthines, isolated from the Mediterranean Sea anemone Parazoanthus axinellae, as novel CXCR4 antagonists. Parazoanthine analogues were then synthesized to evaluate the contribution of functional groups to the overall activity. Within the panel of synthesized natural and non-natural parazoanthines, parazoanthine-B was identified as the most potent CXCR4 antagonist with an IC50 value of 9.3 nM, even though all the investigated compounds were able to antagonize in vitro the down-stream effects of CXC12, albeit with variable potency and efficacy. The results of our study strongly support this class of small molecules as potent CXCR4 antagonists in tumoral pathologies characterized by an overexpression of this receptor. Furthermore, their structure-activity relationships allowed the optimization of our pharmacophoric model, useful for large-scale in silico screening.


Subject(s)
Alkaloids/chemistry , Anthozoa/chemistry , Receptors, CXCR4/antagonists & inhibitors , Alkaloids/pharmacology , Animals , Anthozoa/metabolism , Cloning, Molecular , Clustered Regularly Interspaced Short Palindromic Repeats , Drug Discovery , Humans , Hydantoins , Molecular Docking Simulation , Rats , Signal Transduction , Structure-Activity Relationship
9.
Mar Drugs ; 18(10)2020 Oct 18.
Article in English | MEDLINE | ID: mdl-33081023

ABSTRACT

Labdane diterpenes are widespread classes of natural compounds present in variety of marine and terrestrial organisms and plants. Many of them represents "natural libraries" of compounds with interesting biological activities due to differently functionalized drimane nucleus exploitable for potential pharmacological applications. The transient receptor potential channel subfamily V member 4 (TRPV4) channel has recently emerged as a pharmacological target for several respiratory diseases, including the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. Inspired by the labdane-like bicyclic core, a series of homodrimane-derived esters and amides was designed and synthesized by modifying the flexible tail in position 1 of (+)-sclareolide, an oxidized derivative of the bioactive labdane-type diterpene sclareol. The potency and selectivity towards rTRPV4 and hTRPV1 receptors were assessed by calcium influx cellular assays. Molecular determinants critical for eliciting TRPV4 antagonism were identified by structure-activity relationships. Among the selective TRPV4 antagonists identified, compound 6 was the most active with an IC50 of 5.3 µM. This study represents the first report of semisynthetic homodrimane TRPV4 antagonists, selective over TRPV1, and potentially useful as pharmacological tools for the development of novel TRPV4 channel modulators.


Subject(s)
Diterpenes/chemical synthesis , Diterpenes/pharmacology , Drug Design , TRPV Cation Channels/antagonists & inhibitors , Betacoronavirus , COVID-19 , Coronavirus Infections/drug therapy , Coronavirus Infections/virology , Gene Expression Regulation/drug effects , HEK293 Cells , Humans , Inhibitory Concentration 50 , Molecular Structure , Pandemics , Pneumonia, Viral/drug therapy , Pneumonia, Viral/virology , SARS-CoV-2 , Structure-Activity Relationship
10.
Molecules ; 25(5)2020 Mar 03.
Article in English | MEDLINE | ID: mdl-32138197

ABSTRACT

Phytocannabinoids (pCBs) are a large family of meroterpenoids isolated from the plant Cannabis sativa. Δ9-Tetrahydrocannabinol (THC) and cannabidiol (CBD) are the best investigated phytocannabinoids due to their relative abundance and interesting bioactivity profiles. In addition to various targets, THC and CBD are also well-known agonists of peroxisome proliferator-activated receptor gamma (PPARγ), a nuclear receptor involved in energy homeostasis and lipid metabolism. In the search of new pCBs potentially acting as PPARγ agonists, we identified cannabimovone (CBM), a structurally unique abeo-menthane pCB, as a novel PPARγ modulator via a combined computational and experimental approach. The ability of CBM to act as dual PPARγ/α agonist was also evaluated. Computational studies suggested a different binding mode toward the two isoforms, with the compound able to recapitulate the pattern of H-bonds of a canonical agonist only in the case of PPARγ. Luciferase assays confirmed the computational results, showing a selective activation of PPARγ by CBM in the low micromolar range. CBM promoted the expression of PPARγ target genes regulating the adipocyte differentiation and prevented palmitate-induced insulin signaling impairment. Altogether, these results candidate CBM as a novel bioactive compound potentially useful for the treatment of insulin resistance-related disorders.


Subject(s)
Cannabinoids/chemistry , Cannabinoids/pharmacology , Cannabis/chemistry , PPAR gamma/agonists , PPAR gamma/metabolism , 3T3-L1 Cells , Animals , Energy Metabolism/drug effects , Hydrogen-Ion Concentration , Insulin Resistance/physiology , Mice , Molecular Docking Simulation , Molecular Dynamics Simulation , Molecular Structure , Phosphorylation , Proto-Oncogene Proteins c-akt/metabolism
11.
Mar Drugs ; 17(2)2019 Feb 12.
Article in English | MEDLINE | ID: mdl-30759808

ABSTRACT

The nuclear receptors (NRs) RARα, RXRα, PPARα, and PPARγ represent promising pharmacological targets for the treatment of neurodegenerative diseases. In the search for molecules able to simultaneously target all the above-mentioned NRs, we screened an in-house developed molecular database using a ligand-based approach, identifying (-)-Muqubilin (Muq), a cyclic peroxide norterpene from a marine sponge, as a potential hit. The ability of this compound to stably and effectively bind these NRs was assessed by molecular docking and molecular dynamics simulations. Muq recapitulated all the main interactions of a canonical full agonist for RXRα and both PPARα and PPARγ, whereas the binding mode toward RARα showed peculiar features potentially impairing its activity as full agonist. Luciferase assays confirmed that Muq acts as a full agonist for RXRα, PPARα, and PPARγ with an activity in the low- to sub-micromolar range. On the other hand, in the case of RAR, a very weak agonist activity was observed in the micromolar range. Quite surprisingly, we found that Muq is a positive allosteric modulator for RARα, as both luciferase assays and in vivo analysis using a zebrafish transgenic retinoic acid (RA) reporter line showed that co-administration of Muq with RA produced a potent synergistic enhancement of RARα activation and RA signaling.


Subject(s)
PPAR alpha/agonists , PPAR gamma/agonists , Peroxides/pharmacology , Retinoic Acid Receptor alpha/agonists , Terpenes/pharmacology , Allosteric Regulation , Animals , Animals, Genetically Modified , Drug Synergism , High-Throughput Screening Assays , Humans , Larva , Models, Molecular , Molecular Docking Simulation , Porifera/chemistry , Tretinoin/pharmacology , Zebrafish
12.
Mar Drugs ; 17(1)2019 Jan 16.
Article in English | MEDLINE | ID: mdl-30654557

ABSTRACT

Amphidinolides are cytotoxic macrolides produced by symbiotic unicellular microalgae of the genus Amphidinium. Here we describe the identification of four related molecules belonging to this macrolide family isolated from the invertebrate Stragulum bicolor. The new molecules, named amphidinolide PX1-PX3 and stragulin A (1⁻4), show an unprecedented carbon skeleton whose complete stereochemistry has been determined by spectroscopic and computational methods. Differences in the structures of these molecules modulate their biological activity in a panel of tumor cell lines, but the opened derivative stragulin (4) shows a very potent and specific cytotoxic activity (IC50 0.18 µM) against the aggressive human melanoma cell A2058.


Subject(s)
Anthozoa/parasitology , Antibiotics, Antineoplastic/pharmacology , Aquatic Organisms/chemistry , Dinoflagellida/chemistry , Macrolides/pharmacology , Animals , Antibiotics, Antineoplastic/chemistry , Antibiotics, Antineoplastic/isolation & purification , Cell Line, Tumor , Drug Screening Assays, Antitumor , Humans , Inhibitory Concentration 50 , Macrolides/chemistry , Macrolides/isolation & purification , Molecular Structure
13.
Biochim Biophys Acta Gen Subj ; 1862(6): 1317-1326, 2018 06.
Article in English | MEDLINE | ID: mdl-29524538

ABSTRACT

BACKGROUND: Lysozyme is a widely distributed enzyme present in a variety of tissue and body fluids. Human and hen egg white lysozyme are used as validated model to study protein folding and stability and to understand protein misfolding and aggregation. We recently found that ceftriaxone, a ß-lactam antibiotic able to overcome the blood-brain barrier, successfully eliminated the cellular toxic effects of misfolded proteins as Glial Fibrillary Acidic Protein (GFAP) and α-synuclein. To further understand the anti-amyloidogenic properties of ceftriaxone, we studied its activity towards lysozyme aggregation with the aim to investigate a possible chaperone-like activity of this molecule. METHODS: Here we present the results obtained from fluorescence and synchrotron radiation circular dichroism spectroscopies and from molecular docking and molecular dynamics about the lysozyme-ceftriaxone interaction at neutral and acidic pH values. RESULTS: We found that ceftriaxone exhibits comparable affinity constants to lysozyme in both experimental pH conditions and that its addition enhanced lysozyme stability reducing its aggregation propensity in acidic conditions. Computational methods allowed the identification of the putative binding site of ceftriaxone, thus rationalizing the spectroscopic results. CONCLUSIONS: Spectroscopy data and molecular dynamics indicated a protective effect of ceftriaxone on pathological aggregation phenomena suggesting a chaperone-like effect of this molecule on protein folding. General significance These results, in addition to our previous studies on α-synuclein and GFAP, confirm the property of ceftriaxone to inhibit the pathological protein aggregation of lysozyme also by a chaperone-like mechanism, extending the potential therapeutic application of this molecule to some forms of human hereditary systemic amyloidosis.


Subject(s)
Ceftriaxone/chemistry , Molecular Chaperones , Muramidase/chemistry , Muramidase/metabolism , Protein Multimerization , Animals , Binding Sites , Ceftriaxone/administration & dosage , Computational Biology , Humans , Hydrogen-Ion Concentration , Molecular Docking Simulation , Molecular Dynamics Simulation , Protein Binding , Protein Conformation , Protein Folding
14.
Mar Drugs ; 16(11)2018 Nov 03.
Article in English | MEDLINE | ID: mdl-30400299

ABSTRACT

Although the chemical warfare between invasive and native species has become a central problem in invasion biology, the molecular mechanisms by which bioactive metabolites from invasive pests influence local communities remain poorly characterized. This study demonstrates that the alkaloid caulerpin (CAU)-a bioactive component of the green alga Caulerpa cylindracea that has invaded the entire Mediterranean basin-is an agonist of peroxisome proliferator-activated receptors (PPARs). Our interdisciplinary study started with the in silico prediction of the ligand-protein interaction, which was then validated by in vivo, ex vivo and in vitro assays. On the basis of these results, we candidate CAU as a causal factor of the metabolic and behavioural disorders observed in Diplodus sargus, a native edible fish of high ecological and commercial relevance, feeding on C. cylindracea. Moreover, given the considerable interest in PPAR activators for the treatment of relevant human diseases, our findings are also discussed in terms of a possible nutraceutical/pharmacological valorisation of the invasive algal biomasses, supporting an innovative strategy for conserving biodiversity as an alternative to unrealistic campaigns for the eradication of invasive pests.


Subject(s)
Biological Factors/pharmacology , Caulerpa/metabolism , Fish Diseases/etiology , Indoles/toxicity , Introduced Species , Perciformes/physiology , Peroxisome Proliferator-Activated Receptors/agonists , Animals , Biological Factors/metabolism , Computer Simulation , Ecotoxicology , Fish Diseases/metabolism , Food Chain , Indoles/metabolism , Ligands , Models, Biological , Peroxisome Proliferator-Activated Receptors/metabolism
15.
Biochim Biophys Acta ; 1860(10): 2239-48, 2016 10.
Article in English | MEDLINE | ID: mdl-27133445

ABSTRACT

BACKGROUND: GFAP is the major intermediate filament protein in mature astrocytes. Its increased expression and aggregation was firstly associated to Alexander's disease, and successively in different neurological diseases including scrapie, Alzheimer's and Creutzfeld-Jacob diseases. Recently, ceftriaxone a multi-potent ß-lactam antibiotic able to overcome the blood-brain barrier, successfully eliminated the cellular toxic effects of misfolded mutated GFAP, similarly to phenytoin sodium, in a cellular model of Alexander's disease and inhibited α-synuclein aggregation protecting PC12 cells from the exposure to 6-hydroxydopamine. METHODS: In this study, synchrotron radiation circular dichroism spectroscopy has been used to obtain structural information about the GFAP-ceftriaxone (phenytoin) interactions, while computational methods allowed the identification of the relevant putative binding site of either ceftriaxone or phenytoin on the dimer structure of GFAP, permitting to rationalize the spectroscopic experimental results. RESULTS: We found that GFAP exhibited enhanced stability upon the addition of two equivalents of each ligands with ceftriaxone imparting a more spontaneous interactions and a more ordered complex system than phenytoin. CONCLUSIONS: SRCD data and MD models indicate a stronger protective effect of ceftriaxone in neurological disorders characterized by an increased production and polymerization of GFAP. GENERAL SIGNIFICANCE: This result, in addition to our previous works in which we documented that ceftriaxone interacts with α-synuclein inhibiting its pathological aggregation and that a cyclical treatment with this molecule in a patient with adult-onset Alexander's disease halted, and partly reversed, the progression of neurodegeneration, suggests the possibility of a chaperone-like effect of ceftriaxone on protein involved in specific neurodegenerative diseases.


Subject(s)
Alexander Disease/drug therapy , Ceftriaxone/chemistry , Glial Fibrillary Acidic Protein/metabolism , Protein Aggregation, Pathological/drug therapy , alpha-Synuclein/metabolism , Alexander Disease/metabolism , Alexander Disease/pathology , Animals , Astrocytes/drug effects , Astrocytes/metabolism , Astrocytes/pathology , Binding Sites/drug effects , Ceftriaxone/administration & dosage , Glial Fibrillary Acidic Protein/chemistry , Glial Fibrillary Acidic Protein/genetics , Humans , Intermediate Filament Proteins/chemistry , Intermediate Filament Proteins/metabolism , Molecular Docking Simulation , Molecular Dynamics Simulation , Nerve Degeneration/drug therapy , Nerve Degeneration/pathology , PC12 Cells , Phenytoin/administration & dosage , Phenytoin/chemistry , Protein Aggregation, Pathological/metabolism , Rats , alpha-Synuclein/biosynthesis , alpha-Synuclein/chemistry
16.
J Enzyme Inhib Med Chem ; 32(1): 345-354, 2017 Dec.
Article in English | MEDLINE | ID: mdl-28097900

ABSTRACT

Fraxamoside, a macrocyclic secoiridoid glucoside featuring a hydroxytyrosol group, was recently identified as a xanthine oxidase inhibitor (XOI) comparable in potency in vitro to the standard antigout drug allopurinol. However, this activity and its considerably higher value than its derivatives oleuropein, oleoside 11-methyl ester, and hydroxytyrosol are not explained by structure-activity relationships (SARs) of known XOIs. To exclude allosteric mechanisms, we first determined the inhibition kinetic of fraxamoside. The resulting competitive mechanism prompted a computational SAR characterization, combining molecular docking and dynamics, which fully explained the behavior of fraxamoside and its derivatives, attributed the higher activity of the former to conformational properties of its macrocycle, and showed a substantial contribution of the glycosidic moiety to binding, in striking contrast with glycoside derivatives of most other XOIs. Overall, fraxamoside emerged as a lead compound for a new class of XOIs potentially characterized by reduced interference with purine metabolism.


Subject(s)
Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Iridoids/chemistry , Iridoids/pharmacology , Xanthine Oxidase/antagonists & inhibitors , Inhibitory Concentration 50 , Kinetics , Molecular Docking Simulation , Molecular Dynamics Simulation , Structure-Activity Relationship , Xanthine Oxidase/metabolism
17.
Amino Acids ; 47(8): 1507-15, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25900810

ABSTRACT

Among the available protocols, chemically driven approaches to oxidize cysteine may not be required for molecules that, under the native-like conditions, naturally fold in conformations ensuring an effective pairing of the right disulfide bridge pattern. In this contest, we successfully prepared the distinctin, a natural heterodimeric peptide, and some synthetic cyclic peptides that are inhibitors of the CXCR4 receptor. In the first case, the air oxidation reaction allowed to connect two peptide chains via disulfide bridge, while in the second case allowed the cyclization of rationally designed peptides by an intramolecular disulfide bridge. Computational approaches helped to either drive de-novo design or suggest structural modifications and optimal oxidization protocols for disulfide-containing molecules. They are able to both predict and to rationalize the propensity of molecules to spontaneously fold in suitable conformations to achieve the right disulfide bridges.


Subject(s)
Amphibian Proteins/chemical synthesis , Antimicrobial Cationic Peptides/chemical synthesis , Disulfides/chemical synthesis , Peptides/chemical synthesis , Amphibian Proteins/chemistry , Antimicrobial Cationic Peptides/chemistry , Chemistry Techniques, Synthetic/methods , Cyclization , Cysteine/chemistry , Disulfides/chemistry , Models, Molecular , Oxidation-Reduction , Peptides/chemistry , Peptides, Cyclic/chemical synthesis , Peptides, Cyclic/chemistry , Protein Folding , Protein Multimerization
18.
Expert Opin Ther Pat ; 34(5): 315-332, 2024 May.
Article in English | MEDLINE | ID: mdl-38847054

ABSTRACT

INTRODUCTION: TRPA1 is a nonselective calcium channel, a member of the transient receptor potential (TRP) superfamily, also referred to as the 'irritant' receptor, being activated by pungent and noxious exogenous chemicals as well as by endogenous algogenic stimuli, to elicit pain, itching, and inflammatory conditions. For this reason, it is considered an attractive therapeutic target to treat a wide range of diseases including acute and chronic pain, itching, and inflammatory airway diseases. AREAS COVERED: The present review covers patents on TRPA1 antagonists disclosed from 2020 to present, falling in the following main classes: i) novel therapeutic applications for known or already disclosed antagonists, ii) identification and characterization of TRPA1 antagonists from natural sources, and iii) synthesis and evaluation of novel compounds. EXPERT OPINION: Despite the limited number of TRPA1 antagonists in clinical trials, there is an ever-growing interest on this receptor-channel as therapeutic target, mainly due to the relevant outcomes from basic research, which unveiled novel physio-pathological mechanisms where TRPA1 is believed to play a pivotal role, for example the Alzheimer's disease or ocular diseases, expanding the panel of potential therapeutic applications for TRPA1 modulators.


Subject(s)
Patents as Topic , TRPA1 Cation Channel , Humans , TRPA1 Cation Channel/antagonists & inhibitors , TRPA1 Cation Channel/metabolism , Animals , Pain/drug therapy , Pain/physiopathology , Inflammation/drug therapy , Inflammation/physiopathology , Drug Development
19.
Int J Biol Macromol ; 273(Pt 1): 132968, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38871097

ABSTRACT

Eukaryotic Initiation Translation Factor 2A (EIF2A) is considered to be primarily responsible for the initiation of translation when a cell is subjected to stressful conditions. However, information regarding this protein is still incomplete. Using a combination of proteomic approaches, we demonstrated that EIF2A is the molecular target of the naturally occurring bioactive compound cannabidiolic acid (CBDA) within human glioblastoma cells. This finding allowed us to undertake a study aimed at obtaining further information on the functions that EIF2A plays in tumor cells. Indeed, our data showed that CBDA is able to activate EIF2A when the cells are in no-stress conditions. It induces conformational changes in the protein structure, thus increasing EIF2A affinity towards the proteins participating in the Eukaryotic Translation Machinery. Consequently, following glioblastoma cells incubation with CBDA we observed an enhanced neosynthesis of proteins involved in the stress response, nucleic acid translation and organization, and protein catabolism. These changes in gene expression resulted in increased levels of ubiquitinated proteins and accumulation of the autophagosome. Our results, in addition to shedding light on the molecular mechanism underlying the biological effect of a phytocannabinoid in cancer cells, demonstrated that EIF2A plays a critical role in regulation of protein homeostasis.


Subject(s)
Eukaryotic Initiation Factor-2 , Glioblastoma , Humans , Glioblastoma/metabolism , Glioblastoma/pathology , Eukaryotic Initiation Factor-2/metabolism , Cell Line, Tumor , Proteostasis/drug effects , Protein Biosynthesis/drug effects , Proteomics/methods
20.
ACS Cent Sci ; 10(5): 956-968, 2024 May 22.
Article in English | MEDLINE | ID: mdl-38799662

ABSTRACT

We report a blueprint for the rational design of G protein coupled receptor (GPCR) ligands with a tailored functional response. The present study discloses the structure-based design of cannabinoid receptor type 2 (CB2R) selective inverse agonists (S)-1 and (R)-1, which were derived from privileged agonist HU-308 by introduction of a phenyl group at the gem-dimethylheptyl side chain. Epimer (R)-1 exhibits high affinity for CB2R with Kd = 39.1 nM and serves as a platform for the synthesis of a wide variety of probes. Notably, for the first time these fluorescent probes retain their inverse agonist functionality, high affinity, and selectivity for CB2R independent of linker and fluorophore substitution. Ligands (S)-1, (R)-1, and their derivatives act as inverse agonists in CB2R-mediated cAMP as well as G protein recruitment assays and do not trigger ß-arrestin-receptor association. Furthermore, no receptor activation was detected in live cell ERK1/2 phosphorylation and Ca2+-release assays. Confocal fluorescence imaging experiments with (R)-7 (Alexa488) and (R)-9 (Alexa647) probes employing BV-2 microglial cells visualized CB2R expressed at endogenous levels. Finally, molecular dynamics simulations corroborate the initial docking data in which inverse agonists restrict movement of toggle switch Trp2586.48 and thereby stabilize CB2R in its inactive state.

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