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1.

T cell reactivity to the SARS-CoV-2 Omicron variant is preserved in most but not all individuals.

Naranbhai, Vivek; Nathan, Anusha; Kaseke, Clarety; Berrios, Cristhian; Khatri, Ashok; Choi, Shawn; Getz, Matthew A; Tano-Menka, Rhoda; Ofoman, Onosereme; Gayton, Alton; Senjobe, Fernando; Zhao, Zezhou; St Denis, Kerri J; Lam, Evan C; Carrington, Mary; Garcia-Beltran, Wilfredo F; Balazs, Alejandro B; Walker, Bruce D; Iafrate, A John; Gaiha, Gaurav D.

Cell ; 185(6): 1041-1051.e6, 2022 03 17.

Article in English | MEDLINE | ID: mdl-35202566

2.

Structure-guided T cell vaccine design for SARS-CoV-2 variants and sarbecoviruses.

Nathan, Anusha; Rossin, Elizabeth J; Kaseke, Clarety; Park, Ryan J; Khatri, Ashok; Koundakjian, Dylan; Urbach, Jonathan M; Singh, Nishant K; Bashirova, Arman; Tano-Menka, Rhoda; Senjobe, Fernando; Waring, Michael T; Piechocka-Trocha, Alicja; Garcia-Beltran, Wilfredo F; Iafrate, A John; Naranbhai, Vivek; Carrington, Mary; Walker, Bruce D; Gaiha, Gaurav D.

Cell ; 184(17): 4401-4413.e10, 2021 08 19.

Article in English | MEDLINE | ID: mdl-34265281

3.

Loss of Bcl-6-Expressing T Follicular Helper Cells and Germinal Centers in COVID-19.

Kaneko, Naoki; Kuo, Hsiao-Hsuan; Boucau, Julie; Farmer, Jocelyn R; Allard-Chamard, Hugues; Mahajan, Vinay S; Piechocka-Trocha, Alicja; Lefteri, Kristina; Osborn, Matthew; Bals, Julia; Bartsch, Yannic C; Bonheur, Nathalie; Caradonna, Timothy M; Chevalier, Josh; Chowdhury, Fatema; Diefenbach, Thomas J; Einkauf, Kevin; Fallon, Jon; Feldman, Jared; Finn, Kelsey K; Garcia-Broncano, Pilar; Hartana, Ciputra Adijaya; Hauser, Blake M; Jiang, Chenyang; Kaplonek, Paulina; Karpell, Marshall; Koscher, Eric C; Lian, Xiaodong; Liu, Hang; Liu, Jinqing; Ly, Ngoc L; Michell, Ashlin R; Rassadkina, Yelizaveta; Seiger, Kyra; Sessa, Libera; Shin, Sally; Singh, Nishant; Sun, Weiwei; Sun, Xiaoming; Ticheli, Hannah J; Waring, Michael T; Zhu, Alex L; Alter, Galit; Li, Jonathan Z; Lingwood, Daniel; Schmidt, Aaron G; Lichterfeld, Mathias; Walker, Bruce D; Yu, Xu G; Padera, Robert F.

Cell ; 183(1): 143-157.e13, 2020 10 01.

Article in English | MEDLINE | ID: mdl-32877699

4.

T cell reactivity to the SARS-CoV-2 Omicron variant is preserved in most but not all individuals.

Naranbhai, Vivek; Nathan, Anusha; Kaseke, Clarety; Berrios, Cristhian; Khatri, Ashok; Choi, Shawn; Getz, Matthew A; Tano-Menka, Rhoda; Ofoman, Onosereme; Gayton, Alton; Senjobe, Fernando; Zhao, Zezhou; St Denis, Kerri J; Lam, Evan C; Carrington, Mary; Garcia-Beltran, Wilfredo F; Balazs, Alejandro B; Walker, Bruce D; Iafrate, A John; Gaiha, Gaurav D.

Cell ; 185(7): 1259, 2022 Mar 31.

Article in English | MEDLINE | ID: mdl-35364034

5.

Resistance of HIV-infected macrophages to CD8⁺ T lymphocyte-mediated killing drives activation of the immune system.

Clayton, Kiera L; Collins, David R; Lengieza, Josh; Ghebremichael, Musie; Dotiwala, Farokh; Lieberman, Judy; Walker, Bruce D.

Nat Immunol ; 19(5): 475-486, 2018 05.

Article in English | MEDLINE | ID: mdl-29670239

6.

Functional impairment of HIV-specific CD8⁺ T cells precedes aborted spontaneous control of viremia.

Collins, David R; Urbach, Jonathan M; Racenet, Zachary J; Arshad, Umar; Power, Karen A; Newman, Ruchi M; Mylvaganam, Geetha H; Ly, Ngoc L; Lian, Xiaodong; Rull, Anna; Rassadkina, Yelizaveta; Yanez, Adrienne G; Peluso, Michael J; Deeks, Steven G; Vidal, Francesc; Lichterfeld, Mathias; Yu, Xu G; Gaiha, Gaurav D; Allen, Todd M; Walker, Bruce D.

Immunity ; 54(10): 2372-2384.e7, 2021 10 12.

Article in English | MEDLINE | ID: mdl-34496223

7.

HIV-1 integration landscape during latent and active infection.

Cohn, Lillian B; Silva, Israel T; Oliveira, Thiago Y; Rosales, Rafael A; Parrish, Erica H; Learn, Gerald H; Hahn, Beatrice H; Czartoski, Julie L; McElrath, M Juliana; Lehmann, Clara; Klein, Florian; Caskey, Marina; Walker, Bruce D; Siliciano, Janet D; Siliciano, Robert F; Jankovic, Mila; Nussenzweig, Michel C.

Cell ; 160(3): 420-32, 2015 Jan 29.

Article in English | MEDLINE | ID: mdl-25635456

8.

Evolution and Diversity of Immune Responses during Acute HIV Infection.

Kazer, Samuel W; Walker, Bruce D; Shalek, Alex K.

Immunity ; 53(5): 908-924, 2020 11 17.

Article in English | MEDLINE | ID: mdl-33207216

9.

Phenotypic signatures of immune selection in HIV-1 reservoir cells.

Sun, Weiwei; Gao, Ce; Hartana, Ciputra Adijaya; Osborn, Matthew R; Einkauf, Kevin B; Lian, Xiaodong; Bone, Benjamin; Bonheur, Nathalie; Chun, Tae-Wook; Rosenberg, Eric S; Walker, Bruce D; Yu, Xu G; Lichterfeld, Mathias.

Nature ; 614(7947): 309-317, 2023 02.

Article in English | MEDLINE | ID: mdl-36599977

10.

Prolonged viral suppression with anti-HIV-1 antibody therapy.

Gaebler, Christian; Nogueira, Lilian; Stoffel, Elina; Oliveira, Thiago Y; Breton, Gaëlle; Millard, Katrina G; Turroja, Martina; Butler, Allison; Ramos, Victor; Seaman, Michael S; Reeves, Jacqueline D; Petroupoulos, Christos J; Shimeliovich, Irina; Gazumyan, Anna; Jiang, Caroline S; Jilg, Nikolaus; Scheid, Johannes F; Gandhi, Rajesh; Walker, Bruce D; Sneller, Michael C; Fauci, Anthony; Chun, Tae-Wook; Caskey, Marina; Nussenzweig, Michel C.

Nature ; 606(7913): 368-374, 2022 06.

Article in English | MEDLINE | ID: mdl-35418681

11.

Lactobacillus-Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women.

Gosmann, Christina; Anahtar, Melis N; Handley, Scott A; Farcasanu, Mara; Abu-Ali, Galeb; Bowman, Brittany A; Padavattan, Nikita; Desai, Chandni; Droit, Lindsay; Moodley, Amber; Dong, Mary; Chen, Yuezhou; Ismail, Nasreen; Ndung'u, Thumbi; Ghebremichael, Musie S; Wesemann, Duane R; Mitchell, Caroline; Dong, Krista L; Huttenhower, Curtis; Walker, Bruce D; Virgin, Herbert W; Kwon, Douglas S.

Immunity ; 46(1): 29-37, 2017 01 17.

Article in English | MEDLINE | ID: mdl-28087240

12.

Distinct viral reservoirs in individuals with spontaneous control of HIV-1.

Jiang, Chenyang; Lian, Xiaodong; Gao, Ce; Sun, Xiaoming; Einkauf, Kevin B; Chevalier, Joshua M; Chen, Samantha M Y; Hua, Stephane; Rhee, Ben; Chang, Kaylee; Blackmer, Jane E; Osborn, Matthew; Peluso, Michael J; Hoh, Rebecca; Somsouk, Ma; Milush, Jeffrey; Bertagnolli, Lynn N; Sweet, Sarah E; Varriale, Joseph A; Burbelo, Peter D; Chun, Tae-Wook; Laird, Gregory M; Serrao, Erik; Engelman, Alan N; Carrington, Mary; Siliciano, Robert F; Siliciano, Janet M; Deeks, Steven G; Walker, Bruce D; Lichterfeld, Mathias; Yu, Xu G.

Nature ; 585(7824): 261-267, 2020 09.

Article in English | MEDLINE | ID: mdl-32848246

13.

CD8(+) T Cells and cART: A Dynamic Duo?

Gaiha, Gaurav D; Walker, Bruce D.

Immunity ; 45(3): 466-468, 2016 09 20.

Article in English | MEDLINE | ID: mdl-27653598

14.

Antiviral CD8⁺ T Cells Restricted by Human Leukocyte Antigen Class II Exist during Natural HIV Infection and Exhibit Clonal Expansion.

Ranasinghe, Srinika; Lamothe, Pedro A; Soghoian, Damien Z; Kazer, Samuel W; Cole, Michael B; Shalek, Alex K; Yosef, Nir; Jones, R Brad; Donaghey, Faith; Nwonu, Chioma; Jani, Priya; Clayton, Gina M; Crawford, Frances; White, Janice; Montoya, Alana; Power, Karen; Allen, Todd M; Streeck, Hendrik; Kaufmann, Daniel E; Picker, Louis J; Kappler, John W; Walker, Bruce D.

Immunity ; 45(4): 917-930, 2016 10 18.

Article in English | MEDLINE | ID: mdl-27760342

15.

Innate Lymphoid Cells Are Depleted Irreversibly during Acute HIV-1 Infection in the Absence of Viral Suppression.

Kløverpris, Henrik N; Kazer, Samuel W; Mjösberg, Jenny; Mabuka, Jenniffer M; Wellmann, Amanda; Ndhlovu, Zaza; Yadon, Marisa C; Nhamoyebonde, Shepherd; Muenchhoff, Maximilian; Simoni, Yannick; Andersson, Frank; Kuhn, Warren; Garrett, Nigel; Burgers, Wendy A; Kamya, Philomena; Pretorius, Karyn; Dong, Krista; Moodley, Amber; Newell, Evan W; Kasprowicz, Victoria; Abdool Karim, Salim S; Goulder, Philip; Shalek, Alex K; Walker, Bruce D; Ndung'u, Thumbi; Leslie, Alasdair.

Immunity ; 44(2): 391-405, 2016 Feb 16.

Article in English | MEDLINE | ID: mdl-26850658

16.

TCR clonotypes modulate the protective effect of HLA class I molecules in HIV-1 infection.

Chen, Huabiao; Ndhlovu, Zaza M; Liu, Dongfang; Porter, Lindsay C; Fang, Justin W; Darko, Sam; Brockman, Mark A; Miura, Toshiyuki; Brumme, Zabrina L; Schneidewind, Arne; Piechocka-Trocha, Alicja; Cesa, Kevin T; Sela, Jennifer; Cung, Thai D; Toth, Ildiko; Pereyra, Florencia; Yu, Xu G; Douek, Daniel C; Kaufmann, Daniel E; Allen, Todd M; Walker, Bruce D.

Nat Immunol ; 13(7): 691-700, 2012 Jun 10.

Article in English | MEDLINE | ID: mdl-22683743

17.

Magnitude and Kinetics of CD8+ T Cell Activation during Hyperacute HIV Infection Impact Viral Set Point.

Ndhlovu, Zaza M; Kamya, Philomena; Mewalal, Nikoshia; Kløverpris, Henrik N; Nkosi, Thandeka; Pretorius, Karyn; Laher, Faatima; Ogunshola, Funsho; Chopera, Denis; Shekhar, Karthik; Ghebremichael, Musie; Ismail, Nasreen; Moodley, Amber; Malik, Amna; Leslie, Alasdair; Goulder, Philip J R; Buus, Søren; Chakraborty, Arup; Dong, Krista; Ndung'u, Thumbi; Walker, Bruce D.

Immunity ; 43(3): 591-604, 2015 Sep 15.

Article in English | MEDLINE | ID: mdl-26362266

18.

Cervicovaginal bacteria are a major modulator of host inflammatory responses in the female genital tract.

Anahtar, Melis N; Byrne, Elizabeth H; Doherty, Kathleen E; Bowman, Brittany A; Yamamoto, Hidemi S; Soumillon, Magali; Padavattan, Nikita; Ismail, Nasreen; Moodley, Amber; Sabatini, Mary E; Ghebremichael, Musie S; Nusbaum, Chad; Huttenhower, Curtis; Virgin, Herbert W; Ndung'u, Thumbi; Dong, Krista L; Walker, Bruce D; Fichorova, Raina N; Kwon, Douglas S.

Immunity ; 42(5): 965-76, 2015 May 19.

Article in English | MEDLINE | ID: mdl-25992865

19.

Profound Treg perturbations correlate with COVID-19 severity.

Galván-Peña, Silvia; Leon, Juliette; Chowdhary, Kaitavjeet; Michelson, Daniel A; Vijaykumar, Brinda; Yang, Liang; Magnuson, Angela M; Chen, Felicia; Manickas-Hill, Zachary; Piechocka-Trocha, Alicja; Worrall, Daniel P; Hall, Kathryn E; Ghebremichael, Musie; Walker, Bruce D; Li, Jonathan Z; Yu, Xu G; Mathis, Diane; Benoist, Christophe.

Proc Natl Acad Sci U S A ; 118(37)2021 09 14.

Article in English | MEDLINE | ID: mdl-34433692

20.

Subtle Longitudinal Alterations in Env Sequence Potentiate Differences in Sensitivity to Broadly Neutralizing Antibodies following Acute HIV-1 Subtype C Infection.

Mandizvo, Tawanda; Gumede, Nombali; Ndlovu, Bongiwe; Ndlovu, Siphiwe; Mann, Jaclyn K; Chopera, Denis R; Singh, Lanish; Dong, Krista L; Walker, Bruce D; Ndhlovu, Zaza M; Lavine, Christy L; Seaman, Michael S; Gounder, Kamini; Ndung'u, Thumbi.

J Virol ; 96(24): e0127022, 2022 12 21.

Article in English | MEDLINE | ID: mdl-36453881

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T cell reactivity to the SARS-CoV-2 Omicron variant is preserved in most but not all individuals.

Structure-guided T cell vaccine design for SARS-CoV-2 variants and sarbecoviruses.

Loss of Bcl-6-Expressing T Follicular Helper Cells and Germinal Centers in COVID-19.

T cell reactivity to the SARS-CoV-2 Omicron variant is preserved in most but not all individuals.

Resistance of HIV-infected macrophages to CD8⁺ T lymphocyte-mediated killing drives activation of the immune system.

Functional impairment of HIV-specific CD8⁺ T cells precedes aborted spontaneous control of viremia.

HIV-1 integration landscape during latent and active infection.

Evolution and Diversity of Immune Responses during Acute HIV Infection.

Phenotypic signatures of immune selection in HIV-1 reservoir cells.

Prolonged viral suppression with anti-HIV-1 antibody therapy.

Lactobacillus-Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women.

Distinct viral reservoirs in individuals with spontaneous control of HIV-1.

CD8(+) T Cells and cART: A Dynamic Duo?

Antiviral CD8⁺ T Cells Restricted by Human Leukocyte Antigen Class II Exist during Natural HIV Infection and Exhibit Clonal Expansion.

Innate Lymphoid Cells Are Depleted Irreversibly during Acute HIV-1 Infection in the Absence of Viral Suppression.

TCR clonotypes modulate the protective effect of HLA class I molecules in HIV-1 infection.

Magnitude and Kinetics of CD8+ T Cell Activation during Hyperacute HIV Infection Impact Viral Set Point.

Cervicovaginal bacteria are a major modulator of host inflammatory responses in the female genital tract.

Profound Treg perturbations correlate with COVID-19 severity.

Subtle Longitudinal Alterations in Env Sequence Potentiate Differences in Sensitivity to Broadly Neutralizing Antibodies following Acute HIV-1 Subtype C Infection.