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1.
Sensors (Basel) ; 24(11)2024 May 30.
Article in English | MEDLINE | ID: mdl-38894307

ABSTRACT

This study investigates the effects of ambient illumination and negatively polarized text color on visual fatigue, exploring the issue of visual fatigue when using visual display terminals in low-illumination environments. The research methodology utilizes an experimental design to collect data on changes in pupil accommodation and blink rate through an eye tracker. Participants completed a reading task while exposed to various text colors and ambient light conditions to evaluate visual fatigue and cognitive performance. The study's findings suggest that text color significantly affects visual fatigue, with red text causing the highest level of visual fatigue and yellow text causing the lowest level of visual fatigue. Improvements in ambient lighting reduce visual fatigue, but the degree of improvement varies depending on the text color. Additionally, cognitive performance is better when using yellow and white text but worse when using red text. Yellow text is the most effective choice for reducing visual fatigue under negative polarity. Increasing ambient lighting can also improve visual fatigue in low-illumination conditions. These findings will offer valuable guidance for designing visual terminal device interfaces, especially for low-illumination or night environments, to minimize visual fatigue and improve user experience.

2.
Phys Rev Lett ; 130(21): 214001, 2023 May 26.
Article in English | MEDLINE | ID: mdl-37295099

ABSTRACT

We present an experimental study of the velocity circulation in a quasi-two-dimensional turbulent flow. We show that the area rule of circulation around simple loops holds in both the forward cascade enstrophy inertial range (ΩIR) and the inverse cascade energy inertial range (EIR): When the side lengths of a loop are all within the same inertial range, the circulation statistics depend on the loop area alone. It is also found that, for circulation around figure-eight loops, the area rule still holds in EIR but is not applicable in ΩIR. In ΩIR, the circulation is nonintermittent; whereas in EIR, the circulation is bifractal: space filling for moments of the order of 3 and below and a monofractal with a dimension of 1.42 for higher orders. Our results demonstrate, as in a numerical study of 3D turbulence [K. P. Iyer et al., Circulation in High Reynolds Number Isotropic Turbulence is a Bifractal, Phys. Rev. X 9, 041006 (2019).PRXHAE2160-330810.1103/PhysRevX.9.041006], that, in terms of circulation, turbulent flows exhibit a simpler behavior than velocity increments, as the latter are multifractals.

3.
J Biopharm Stat ; 32(6): 969-985, 2022 11 02.
Article in English | MEDLINE | ID: mdl-35576472

ABSTRACT

Personalized medicine has gained much attention in the past decades, and identifying the effects of factors is essential for personalized preventions and treatments. Hypertension is a major modifiable risk factor for cardiovascular disease and is influenced by complex factors. In order to decrease the incidence of hypertension effectively, the subjects should be divided into subgroups according to their characteristics. In this study, we proposed to use a heterogeneous logistic regression combined with a concave fusion penalty to analyze the population-based survey data, including common influencing factors of hypertension. The analytic steps include: (1) identifying the most important predictor; (2) estimating subgroup-based heterogeneous effects. In the present context of primary hypertension data, the modeling results showed that the calculated prediction accuracy under our method was greater than 99%, while zero under the classical logistic regression. The findings could provide a practical guide for further individualized measures implementation.


Subject(s)
Cardiovascular Diseases , Hypertension , Humans , Logistic Models , Risk Factors
4.
Br J Cancer ; 123(7): 1101-1113, 2020 09.
Article in English | MEDLINE | ID: mdl-32684628

ABSTRACT

BACKGROUND: Epithelioid inflammatory myofibroblastic sarcoma (eIMS) is characterised by perinuclear ALK localisation, CD30 expression and early relapse despite crizotinib treatment. We aimed to identify therapies to prevent and/or treat ALK inhibitor resistance. METHODS: Malignant ascites, from an eIMS patient at diagnosis and following multiple relapses, were used to generate matched diagnosis and relapse xenografts. RESULTS: Xenografts were validated by confirmation of RANBP2-ALK rearrangement, perinuclear ALK localisation and CD30 expression. Although brentuximab-vedotin (BV) demonstrated single-agent activity, tumours regrew during BV therapy. BV resistance was associated with reduced CD30 expression and induction of ABCB1. BV resistance was reversed in vitro by tariquidar, but combination BV and tariquidar treatment only briefly slowed xenograft growth compared with BV alone. Combining BV with either crizotinib or ceritinib resulted in marked tumour shrinkage in both xenograft models, and resulted in prolonged tumour-free survival in the diagnosis compared with the relapse xenograft. CONCLUSIONS: CD30 is a therapeutic target in eIMS. BV efficacy is limited by the rapid emergence of resistance. Prolonged survival with combination ALK and CD30-targeted-therapy in the diagnosis model provides the rationale to trial this combination in eIMS patients at diagnosis. This combination could also be considered for other CD30-positive, ALK-rearranged malignancies.


Subject(s)
Anaplastic Lymphoma Kinase/antagonists & inhibitors , Anaplastic Lymphoma Kinase/genetics , Gene Rearrangement , Ki-1 Antigen/antagonists & inhibitors , Molecular Chaperones/genetics , Myofibroblasts/pathology , Nuclear Pore Complex Proteins/genetics , Sarcoma/drug therapy , ATP Binding Cassette Transporter, Subfamily B, Member 1/antagonists & inhibitors , Aged, 80 and over , Animals , Brentuximab Vedotin/therapeutic use , Drug Resistance, Neoplasm , Humans , Inflammation , Male , Mice , Sarcoma/genetics , Xenograft Model Antitumor Assays
5.
Br J Cancer ; 122(5): 680-691, 2020 03.
Article in English | MEDLINE | ID: mdl-31919402

ABSTRACT

BACKGROUND: Predictive preclinical models play an important role in the assessment of new treatment strategies and as avatar models for personalised medicine; however, reliable and timely model generation is challenging. We investigated the feasibility of establishing patient-derived xenograft (PDX) models of high-risk neuroblastoma from a range of tumour-bearing patient materials and assessed approaches to improve engraftment efficiency. METHODS: PDX model development was attempted in NSG mice by using tumour materials from 12 patients, including primary and metastatic solid tumour samples, bone marrow, pleural fluid and residual cells from cytogenetic analysis. Subcutaneous, intramuscular and orthotopic engraftment were directly compared for three patients. RESULTS: PDX models were established for 44% (4/9) of patients at diagnosis and 100% (5/5) at relapse. In one case, attempted engraftment from pleural fluid resulted in an EBV-associated atypical lymphoid proliferation. Xenogeneic graft versus host disease was observed with attempted engraftment from lymph node and bone marrow tumour samples but could be prevented by T-cell depletion. Orthotopic engraftment was more efficient than subcutaneous or intramuscular engraftment. CONCLUSIONS: High-risk neuroblastoma PDX models can be reliably established from diverse sample types. Orthotopic implantation allows more rapid model development, increasing the likelihood of developing an avatar model within a clinically useful timeframe.


Subject(s)
Neoplasm Transplantation/methods , Neuroblastoma/pathology , Neuroblastoma/therapy , Precision Medicine/methods , Xenograft Model Antitumor Assays/methods , Animals , Feasibility Studies , Female , Humans , Immunohistochemistry , Mice , Mice, Inbred NOD , Neuroblastoma/genetics , Random Allocation , T-Lymphocytes/immunology , T-Lymphocytes/pathology
6.
Pediatr Blood Cancer ; 67(4): e28133, 2020 04.
Article in English | MEDLINE | ID: mdl-31876116

ABSTRACT

BACKGROUND: The aim of this study was to improve the predictive power of patient-derived xenografts (PDXs, also known as mouse avatars) to more accurately reflect outcomes of clofarabine-based treatment in pediatric acute lymphoblastic leukemia (ALL) patients. PROCEDURE: Pharmacokinetic (PK) studies were conducted using clofarabine at 3.5 to 15 mg/kg in mice. PDXs were established from relapsed/refractory ALL patients who exhibited good or poor responses to clofarabine. PDX engraftment and response to clofarabine (either as a single agent or in combinations) were assessed based on stringent objective response measures modeled after the clinical setting. RESULTS: In naïve immune-deficient NSG mice, we determined that a clofarabine dose of 3.5 mg/kg resulted in systemic exposures equivalent to those achieved in pediatric ALL patients treated with clofarabine-based regimens. This dose was markedly lower than the doses of clofarabine used in previously reported preclinical studies (typically 30-60 mg/kg) and, when scheduled consistent with the clinical regimen (daily × 5), resulted in 34-fold lower clofarabine exposures. Using a well-tolerated clofarabine/etoposide/cyclophosphamide combination regimen, we then found that the responses of PDXs better reflected the clinical responses of the patients from whom the PDXs were derived. CONCLUSIONS: This study has identified an in vivo clofarabine treatment regimen that reflects the clinical responses of relapsed/refractory pediatric ALL patients. This regimen could be used prospectively to identify patients who might benefit from clofarabine-based treatment. Our findings are an important step toward individualizing prospective patient selection for the use of clofarabine in relapsed/refractory pediatric ALL patients and highlight the need for detailed PK evaluation in murine PDX models.


Subject(s)
Antineoplastic Combined Chemotherapy Protocols/pharmacology , Precision Medicine/methods , Precursor Cell Lymphoblastic Leukemia-Lymphoma/drug therapy , Xenograft Model Antitumor Assays , Animals , Antimetabolites, Antineoplastic/pharmacology , Clofarabine/pharmacology , Cyclophosphamide/pharmacology , Etoposide/pharmacology , Humans , Mice
7.
Cancer Res ; 83(16): 2716-2732, 2023 08 15.
Article in English | MEDLINE | ID: mdl-37523146

ABSTRACT

For one-third of patients with pediatric cancer enrolled in precision medicine programs, molecular profiling does not result in a therapeutic recommendation. To identify potential strategies for treating these high-risk pediatric patients, we performed in vitro screening of 125 patient-derived samples against a library of 126 anticancer drugs. Tumor cell expansion did not influence drug responses, and 82% of the screens on expanded tumor cells were completed while the patients were still under clinical care. High-throughput drug screening (HTS) confirmed known associations between activating genomic alterations in NTRK, BRAF, and ALK and responses to matching targeted drugs. The in vitro results were further validated in patient-derived xenograft models in vivo and were consistent with clinical responses in treated patients. In addition, effective combinations could be predicted by correlating sensitivity profiles between drugs. Furthermore, molecular integration with HTS identified biomarkers of sensitivity to WEE1 and MEK inhibition. Incorporating HTS into precision medicine programs is a powerful tool to accelerate the improved identification of effective biomarker-driven therapeutic strategies for treating high-risk pediatric cancers. SIGNIFICANCE: Integrating HTS with molecular profiling is a powerful tool for expanding precision medicine to support drug treatment recommendations and broaden the therapeutic options available to high-risk pediatric cancers.


Subject(s)
Antineoplastic Agents , Neoplasms , Humans , Child , Drug Evaluation, Preclinical , Early Detection of Cancer , Neoplasms/drug therapy , Neoplasms/genetics , Antineoplastic Agents/pharmacology , Antineoplastic Agents/therapeutic use , High-Throughput Screening Assays/methods
8.
Sci Adv ; 8(41): eabq2566, 2022 Oct 14.
Article in English | MEDLINE | ID: mdl-36223461

ABSTRACT

The ocean's turbulent energy cycle has a paradox; large-scale eddies under the control of Earth's rotation transfer kinetic energy (KE) to larger scales via an inverse cascade, while a transfer to smaller scales is needed for dissipation. It has been hypothesized, using simulations, that fronts, waves, and other turbulent structures can produce a forward cascade of KE toward dissipation scales. However, this forward cascade and its coexistence with the inverse cascade have never been observed. Here, we present the first evidence of a dual KE cascade in the ocean by analyzing in situ velocity measurements from surface drifters. Our results show that KE is injected at two dominant scales and transferred to both large and small scales, with the downscale flux dominating at scales smaller than ∼1 to 10 km. The cascade rates are modulated seasonally, with stronger KE injection and downscale transfer during winter.

9.
Front Big Data ; 5: 805713, 2022.
Article in English | MEDLINE | ID: mdl-35284822

ABSTRACT

Despite progress toward gender equality in the labor market over the past few decades, gender segregation in labor force composition and labor market outcomes persists. Evidence has shown that job advertisements may express gender preferences, which may selectively attract potential job candidates to apply for a given post and thus reinforce gendered labor force composition and outcomes. Removing gender-explicit words from job advertisements does not fully solve the problem as certain implicit traits are more closely associated with men, such as ambitiousness, while others are more closely associated with women, such as considerateness. However, it is not always possible to find neutral alternatives for these traits, making it hard to search for candidates with desired characteristics without entailing gender discrimination. Existing algorithms mainly focus on the detection of the presence of gender biases in job advertisements without providing a solution to how the text should be (re)worded. To address this problem, we propose an algorithm that evaluates gender bias in the input text and provides guidance on how the text should be debiased by offering alternative wording that is closely related to the original input. Our proposed method promises broad application in the human resources process, ranging from the development of job advertisements to algorithm-assisted screening of job applications.

10.
EMBO Mol Med ; 14(4): e14608, 2022 04 07.
Article in English | MEDLINE | ID: mdl-34927798

ABSTRACT

Biomarkers which better match anticancer drugs with cancer driver genes hold the promise of improved clinical responses and cure rates. We developed a precision medicine platform of rapid high-throughput drug screening (HTS) and patient-derived xenografting (PDX) of primary tumor tissue, and evaluated its potential for treatment identification among 56 consecutively enrolled high-risk pediatric cancer patients, compared with conventional molecular genomics and transcriptomics. Drug hits were seen in the majority of HTS and PDX screens, which identified therapeutic options for 10 patients for whom no targetable molecular lesions could be found. Screens also provided orthogonal proof of drug efficacy suggested by molecular analyses and negative results for some molecular findings. We identified treatment options across the whole testing platform for 70% of patients. Only molecular therapeutic recommendations were provided to treating oncologists and led to a change in therapy in 53% of patients, of whom 29% had clinical benefit. These data indicate that in vitro and in vivo drug screening of tumor cells could increase therapeutic options and improve clinical outcomes for high-risk pediatric cancer patients.


Subject(s)
Antineoplastic Agents , Neoplasms , Animals , Antineoplastic Agents/pharmacology , Antineoplastic Agents/therapeutic use , Child , Disease Models, Animal , Genomics/methods , Humans , Neoplasms/pathology , Precision Medicine/methods , Xenograft Model Antitumor Assays
11.
Cancer Cytopathol ; 129(10): 805-818, 2021 10.
Article in English | MEDLINE | ID: mdl-34043284

ABSTRACT

BACKGROUND: The development of high-throughput drug screening (HTS) using primary cultures provides a promising, clinically translatable approach to tailoring treatment strategies for patients with cancer. However, this has been challenging for solid tumors because of often limited amounts of tissue available. In most cases, in vitro expansion is required before HTS, which may lead to overgrowth and contamination by non-neoplastic cells. METHODS: In this study, hematoxylin and eosin staining and immunohistochemical staining were performed on 129 cytopathology cases from 95 patients. These cytopathology cases comprised cell block preparations derived from primary tumor specimens or patient-derived xenografts as part of a pediatric precision oncology trial. Cytopathology cases were compared with the morphology and immunohistochemical staining profile of the original tumor. Cases were reported as tumor cells present, equivocal, or tumor cells absent. The HTS results from cytopathologically validated cultures were incorporated into a multidisciplinary tumor board report issued to the treating clinician to guide clinical decision making. RESULTS: On cytopathologic examination, tumor cells were present in 77 of 129 cases (60%) and were absent in 38 of 129 cases (29%), whereas 14 of 129 cases (11%) were equivocal. Cultures that contained tumor cells resembled the tumors from which they were derived. CONCLUSIONS: Cytopathologic examination of tumor cell block preparations is feasible and provides detailed morphologic characterization. Cytopathologic examination is essential for ensuring that samples submitted for HTS contain representative tumor cells and that in vitro drug sensitivity data are clinically translatable.


Subject(s)
Neoplasms , Humans , Immunohistochemistry , Medical Oncology , Neoplasms/drug therapy , Neoplasms/pathology , Pathology , Precision Medicine
12.
Oncotarget ; 7(28): 44492-44504, 2016 Jul 12.
Article in English | MEDLINE | ID: mdl-27283984

ABSTRACT

Progression of castration-resistant tumors is frequent in prostate cancer. Current systemic treatments for castration-resistant prostate cancer only produce modest increases in survival time and self-renewing Tumor-Initiating Cells (TICs) are suspected to play an important role in resistance to these treatments. However it remains unclear whether the same TICs display both chemo-resistance and self-renewing abilities throughout progression from early stage lesions to late, castration resistant tumors. Here, we found that treatment of mice bearing LNCaP-derived xenograft tumors with cytotoxic (docetaxel) and anti-androgen (flutamide) compounds enriched for cells that express TROP2, a putative TIC marker. Consistent with a tumor-initiating role, TROP2high cells from androgen-sensitive prostate cancer cell lines displayed an enhanced ability to re-grow in culture following treatment with taxane-based chemotherapy with or without androgen blockade. TROP2 down-regulation in these cells reduced their ability to recur after treatment with docetaxel, in the presence or absence of flutamide. Accordingly, in silico analysis of published clinical data revealed that prostate cancer patients with poor prognosis exhibit significantly elevated TROP2 expression level compared to low-risk patients, particularly in the case of patients diagnosed with early stage tumors. In contrast, in androgen-independent prostate cancer cell lines, TROP2high cells did not exhibit a differential treatment response but were characterized by their high self-renewal ability. Based on these findings we propose that high TROP2 expression identifies distinct cell sub-populations in androgen-sensitive and androgen-independent prostate tumors and that it may be a predictive biomarker for prostate cancer treatment response in androgen-sensitive tumors.


Subject(s)
Antigens, Neoplasm/genetics , Cell Adhesion Molecules/genetics , Flutamide/pharmacology , Gene Expression Regulation, Neoplastic , Prostatic Neoplasms/drug therapy , Taxoids/pharmacology , Androgen Antagonists/administration & dosage , Androgen Antagonists/pharmacology , Animals , Antigens, Neoplasm/metabolism , Antineoplastic Agents/administration & dosage , Antineoplastic Agents/pharmacology , Antineoplastic Combined Chemotherapy Protocols/therapeutic use , Cell Adhesion Molecules/metabolism , Cell Survival/drug effects , Cell Survival/genetics , Docetaxel , Flutamide/administration & dosage , Gene Expression Profiling/methods , Kaplan-Meier Estimate , Male , Mice, Inbred NOD , Mice, SCID , Neoplastic Stem Cells/drug effects , Neoplastic Stem Cells/metabolism , Neoplastic Stem Cells/pathology , Prostatic Neoplasms/genetics , Prostatic Neoplasms/metabolism , Prostatic Neoplasms, Castration-Resistant/drug therapy , Prostatic Neoplasms, Castration-Resistant/genetics , Prostatic Neoplasms, Castration-Resistant/metabolism , Taxoids/administration & dosage , Xenograft Model Antitumor Assays/methods
13.
Oncotarget ; 7(37): 60475-60490, 2016 Sep 13.
Article in English | MEDLINE | ID: mdl-27528024

ABSTRACT

Patient derived xenografts (PDXs) have become a vital, frequently used, component of anti-cancer drug development. PDXs can be serially passaged in vivo for years, and shared across laboratories. As a consequence, the potential for mis-identification and cross-contamination is possible, yet authentication of PDXs appears limited. We present a PDX Authentication System (PAS), by combining a commercially available OpenArray assay of single nucleotide polymorphisms (SNPs) with in-house R studio programs, to validate PDXs established in individual mice from acute lymphoblastic leukemia biopsies. The PAS is sufficiently robust to identify contamination at levels as low as 3%, similar to the gold standard of short tandem repeat (STR) profiling. We have surveyed a panel of PDXs established from 73 individual leukemia patients, and found that the PAS provided sufficient discriminatory power to identify each xenograft. The identified SNP-discrepant PDXs demonstrated distinct gene expression profiles, indicating a risk of contamination for PDXs at high passage number. The PAS also allows for the authentication of tumor cells with complex karyotypes from solid tumors including prostate cancer and Ewing's sarcoma. This study highlights the demands of authenticating PDXs for cancer research, and evaluates a reliable authentication platform that utilizes a commercially available and cost-effective system.


Subject(s)
Genotype , Precursor Cell Lymphoblastic Leukemia-Lymphoma/genetics , Prostatic Neoplasms/genetics , Sarcoma, Ewing/genetics , Animals , Cell Line, Tumor , Chimerism , Chromosome Aberrations , Female , High-Throughput Nucleotide Sequencing , Humans , Male , Mice , Mice, SCID , Polymorphism, Single Nucleotide , Tissue Array Analysis , Xenograft Model Antitumor Assays
14.
Article in English | MEDLINE | ID: mdl-25019882

ABSTRACT

In microfluidic applications involving high-frequency acoustic waves over a solid boundary, the Stokes boundary-layer thickness δ is so small that some non-negligible slip may occur at the fluid-solid interface. This paper assesses the impact of this slip by revisiting the classical problem of steady acoustic streaming over a flat boundary, replacing the no-slip boundary condition with the Navier condition u|_{y=0}=L_{s}∂_{y}u|_{y=0}, where u is the velocity tangent to the boundary y=0, and the parameter L_{s} is the slip length. A general expression is obtained for the streaming velocity across the boundary layer as a function of the dimensionless parameter L_{s}/δ. The limit outside the boundary layer provides an effective slip velocity satisfied by the interior mean flow. Particularizing to traveling and standing waves shows that the boundary slip respectively increases and decreases the streaming velocity.


Subject(s)
Models, Theoretical , Acoustics , Motion
15.
ChemMedChem ; 9(2): 399-410, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24339417

ABSTRACT

Noscapine, a phthalideisoquinoline alkaloid derived from Papaver somniferum, is a well-known antitussive drug that has a relatively safe in vitro toxicity profile. Noscapine is also known to possess weak anticancer efficacy, and since its discovery, efforts have been made to design derivatives with improved potency. Herein, the synthesis of a series of noscapine analogues, which have been modified in the 6', 9', 1 and 7-positions, is described. In a previous study, replacement of the naturally occurring N-methyl group in the 6'-position with an N-ethylaminocarbonyl was shown to promote cell-cycle arrest and cytotoxicity against three cancer cell lines. Here, this modification has been combined with other structural changes that have previously been shown to improve anticancer activity, namely halo substitution in the 9'-position, regioselective O-demethylation to reveal a free phenol in the 7-position, and reduction of the lactone to the corresponding cyclic ether in the 1-position. The incorporation of new aryl substituents in the 9'-position was also investigated. The study identified interesting new compounds able to induce G2/M cell-cycle arrest and that possess cytotoxic activity against the human prostate carcinoma cell line PC3, the human breast adenocarcinoma cell line MCF-7, and the human pancreatic epithelioid carcinoma cell line PANC-1. In particular, the ethyl urea cyclic ether noscapinoids and a compound containing a 6'-ethylaminocarbonyl along with 9'-chloro, 7-hydroxy and lactone moieties exhibited the most promising biological activities, with EC50 values in the low micromolar range against all three cancer cell lines, and these derivatives warrant further investigation.


Subject(s)
Antineoplastic Agents, Phytogenic/chemistry , Antineoplastic Agents, Phytogenic/pharmacology , Noscapine/analogs & derivatives , Noscapine/pharmacology , Papaver/chemistry , Cell Cycle/drug effects , Cell Line, Tumor , Female , Humans , Male , Neoplasms/drug therapy , Structure-Activity Relationship
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