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1.
Cell ; 183(6): 1665-1681.e18, 2020 12 10.
Article in English | MEDLINE | ID: mdl-33188776

ABSTRACT

We present deterministic barcoding in tissue for spatial omics sequencing (DBiT-seq) for co-mapping of mRNAs and proteins in a formaldehyde-fixed tissue slide via next-generation sequencing (NGS). Parallel microfluidic channels were used to deliver DNA barcodes to the surface of a tissue slide, and crossflow of two sets of barcodes, A1-50 and B1-50, followed by ligation in situ, yielded a 2D mosaic of tissue pixels, each containing a unique full barcode AB. Application to mouse embryos revealed major tissue types in early organogenesis as well as fine features like microvasculature in a brain and pigmented epithelium in an eye field. Gene expression profiles in 10-µm pixels conformed into the clusters of single-cell transcriptomes, allowing for rapid identification of cell types and spatial distributions. DBiT-seq can be adopted by researchers with no experience in microfluidics and may find applications in a range of fields including developmental biology, cancer biology, neuroscience, and clinical pathology.


Subject(s)
DNA Barcoding, Taxonomic , Genomics , Organ Specificity/genetics , Animals , Automation , Brain/embryology , Cluster Analysis , DNA, Complementary/genetics , Embryo, Mammalian/metabolism , Eye/embryology , Female , Gene Expression Regulation, Developmental , Human Umbilical Vein Endothelial Cells/metabolism , Humans , Mice, Inbred C57BL , Microfluidics , RNA, Messenger/genetics , RNA, Messenger/metabolism , Reproducibility of Results , Single-Cell Analysis , Transcriptome/genetics
2.
Plant J ; 119(5): 2168-2180, 2024 Sep.
Article in English | MEDLINE | ID: mdl-38990529

ABSTRACT

Mass spectrometry imaging (MSI) has become increasingly popular in plant science due to its ability to characterize complex chemical, spatial, and temporal aspects of plant metabolism. Over the past decade, as the emerging and unique features of various MSI techniques have continued to support new discoveries in studies of plant metabolism closely associated with various aspects of plant function and physiology, spatial metabolomics based on MSI techniques has positioned it at the forefront of plant metabolic studies, providing the opportunity for far higher resolution than was previously available. Despite these efforts, profound challenges at the levels of spatial resolution, sensitivity, quantitative ability, chemical confidence, isomer discrimination, and spatial multi-omics integration, undoubtedly remain. In this Perspective, we provide a contemporary overview of the emergent MSI techniques widely used in the plant sciences, with particular emphasis on recent advances in methodological breakthroughs. Having established the detailed context of MSI, we outline both the golden opportunities and key challenges currently facing plant metabolomics, presenting our vision as to how the enormous potential of MSI technologies will contribute to progress in plant science in the coming years.


Subject(s)
Mass Spectrometry , Metabolomics , Plants , Metabolomics/methods , Plants/metabolism , Mass Spectrometry/methods
3.
J Proteome Res ; 23(8): 3342-3352, 2024 Aug 02.
Article in English | MEDLINE | ID: mdl-39026393

ABSTRACT

Colorectal cancer is a predominant malignancy with a second mortality worldwide. Despite its prevalence, therapeutic options remain constrained and surgical operation is still the most useful therapy. In this regard, a comprehensive spatially resolved quantitative proteome atlas was constructed to explore the functional proteomic landscape of colorectal cancer. This strategy integrates histopathological analysis, laser capture microdissection, and proteomics. Spatial proteome profiling of 200 tissue section samples facilitated by the fully integrated sample preparation technology SISPROT enabled the identification of more than 4000 proteins on the Orbitrap Exploris 240 from 2 mm2 × 10 µm tissue sections. Compared with normal adjacent tissues, we identified a spectrum of cancer-associated proteins and dysregulated pathways across various regions of colorectal cancer including ascending colon, transverse colon, descending colon, sigmoid colon, and rectum. Additionally, we conducted proteomic analysis on tumoral epithelial cells and paracancerous epithelium from early to advanced stages in hallmark rectum cancer and sigmoid colon cancer. Bioinformatics analysis revealed functional proteins and cell-type signatures associated with different regions of colorectal tumors, suggesting potential clinical implications. Overall, this study provides a comprehensive spatially resolved functional proteome landscape of colorectal cancer, serving as a valuable resource for exploring potential biomarkers and therapeutic targets.


Subject(s)
Colorectal Neoplasms , Proteome , Proteomics , Tumor Microenvironment , Humans , Colorectal Neoplasms/pathology , Colorectal Neoplasms/metabolism , Colorectal Neoplasms/genetics , Proteomics/methods , Proteome/analysis , Laser Capture Microdissection , Biomarkers, Tumor/metabolism , Biomarkers, Tumor/genetics , Computational Biology
4.
J Synchrotron Radiat ; 31(Pt 4): 896-909, 2024 Jul 01.
Article in English | MEDLINE | ID: mdl-38843003

ABSTRACT

Signal-to-noise ratio and spatial resolution are quantitatively analysed in the context of in-line (propagation based) X-ray phase-contrast imaging. It is known that free-space propagation of a coherent X-ray beam from the imaged object to the detector plane, followed by phase retrieval in accordance with Paganin's method, can increase the signal-to-noise in the resultant images without deteriorating the spatial resolution. This results in violation of the noise-resolution uncertainty principle and demonstrates `unreasonable' effectiveness of the method. On the other hand, when the process of free-space propagation is performed in software, using the detected intensity distribution in the object plane, it cannot reproduce the same effectiveness, due to the amplification of photon shot noise. Here, it is shown that the performance of Paganin's method is determined by just two dimensionless parameters: the Fresnel number and the ratio of the real decrement to the imaginary part of the refractive index of the imaged object. The relevant theoretical analysis is performed first, followed by computer simulations and then by a brief test using experimental images collected at a synchrotron beamline. More extensive experimental tests will be presented in the second part of this paper.

5.
Magn Reson Med ; 2024 Jul 12.
Article in English | MEDLINE | ID: mdl-38997797

ABSTRACT

PURPOSE: Comprehensive assessment of image quality requires accounting for spatial variations in (i) intensity artifact, (ii) geometric distortion, (iii) signal-to-noise ratio (SNR), and (iv) spatial resolution, among other factors. This work presents an ensemble of methods to meet this need, from phantom design to image analysis, and applies it to the scenario of imaging near metal. METHODS: A modular phantom design employing a gyroid lattice is developed to enable the co-registered volumetric quantitation of image quality near a metallic hip implant. A method for measuring spatial resolution by means of local point spread function (PSF) estimation is presented and the relative fitness of gyroid and cubic lattices is examined. Intensity artifact, geometric distortion, and SNR maps are also computed. Results are demonstrated with 2D-FSE and MAVRIC-SL scan protocols on a 3T MRI scanner. RESULTS: The spatial resolution method demonstrates a worst-case error of 0.17 pixels for measuring in-plane blurring up to 3 pixels (full width at half maximum). The gyroid outperforms a cubic lattice design for the local PSF estimation task. The phantom supports four configurations toggling the presence/absence of both metal and structure with good spatial correspondence for co-registered analysis of the four quality factors. The marginal scan time to evaluate one scan protocol amounts to five repetitions. The phantom design can be fabricated in 2 days at negligible material cost. CONCLUSION: The phantom and associated analysis methods can elucidate complex image quality trade-offs involving intensity artifact, geometric distortion, SNR, and spatial resolution. The ensemble of methods is suitable for benchmarking imaging performance near metal.

6.
Magn Reson Med ; 91(6): 2374-2390, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38225861

ABSTRACT

PURPOSE: To evaluate the performance of various MR electrical properties tomography (MR-EPT) methods at 3 T in terms of absolute quantification and spatial resolution limit for electrical conductivity. METHODS: Absolute quantification as well as spatial resolution performance were evaluated on homogeneous phantoms and a phantom with holes of different sizes, respectively. Ground-truth conductivities were measured with an open-ended coaxial probe connected to a vector network analyzer (VNA). Four widely used MR-EPT reconstruction methods were investigated: phase-based Helmholtz (PB), phase-based convection-reaction (PB-cr), image-based (IB), and generalized-image-based (GIB). These methods were compared using the same complex images from a 1 mm-isotropic UTE sequence. Alternative transceive phase acquisition sequences were also compared in PB and PB-cr. RESULTS: In large homogeneous phantoms, all methods showed a strong correlation with ground truth conductivities (r > 0.99); however, GIB was the best in terms of accuracy, spatial uniformity, and robustness to boundary artifacts. In the resolution phantom, the normalized root-mean-squared error of all methods grew rapidly (>0.40) when the hole size was below 10 mm, with simplified methods (PB and IB), or below 5 mm, with generalized methods (PB-cr and GIB). CONCLUSION: VNA measurements are essential to assess the accuracy of MR-EPT. In this study, all tested MR-EPT methods correlated strongly with the VNA measurements. The UTE sequence is recommended for MR-EPT, with the GIB method providing good accuracy for structures down to 5 mm. Structures below 5 mm may still be detected in the conductivity maps, but with significantly lower accuracy.


Subject(s)
Brain , Image Processing, Computer-Assisted , Image Processing, Computer-Assisted/methods , Algorithms , Magnetic Resonance Imaging/methods , Electric Conductivity , Phantoms, Imaging , Tomography/methods
7.
Mass Spectrom Rev ; 42(5): 2234-2267, 2023.
Article in English | MEDLINE | ID: mdl-37462443

ABSTRACT

This Tutorial is to provide a summary of parameters useful for successful outcomes of laserspray ionization (LSI) and related methods that employ a laser to ablate a matrix:analyte sample to produce highly charged ions. In these methods the purpose of the laser is to transfer matrix-analyte clusters into the gas phase. Ions are hypothesized to be produced by a thermal process where emitted matrix:analyte gas-phase particles/clusters are charged and loss of matrix from the charged particles leads to release of the analyte ions into the gas phase. The thermal energy responsible for the charge-separation process is relatively low and not necessarily supplied by the laser; a heated inlet tube linking atmospheric pressure with the first vacuum stage of a mass spectrometer is sufficient. The inlet becomes the "ion source", and inter alia, pressure, temperature, and the matrix, which can be a solid, liquid, or combinations, become critical parameters. Injecting matrix:analyte into a heated inlet tube using laser ablation, a shockwave, or simply tapping, all produce the similar mass spectra. Applications are provided that showcase new opportunities in the field of mass spectrometry.

8.
J Exp Biol ; 227(2)2024 01 15.
Article in English | MEDLINE | ID: mdl-38126722

ABSTRACT

Birds use their visual systems for important tasks, such as foraging and predator detection, that require them to resolve an image. However, visual acuity (the ability to perceive spatial detail) varies by two orders of magnitude across birds. Prior studies indicate that eye size and aspects of a species' ecology may drive variation in acuity, but these studies have been restricted to small numbers of species. We used a literature review to gather data on acuity measured either behaviorally or anatomically for 94 species from 38 families. We then examined how acuity varies in relation to (1) eye size, (2) habitat spatial complexity, (3) habitat light level, (4) diet composition, (5) prey mobility and (6) foraging mode. A phylogenetically controlled model including all of the above factors as predictors indicated that eye size and foraging mode are significant predictors of acuity. Examining each ecological variable in turn revealed that acuity is higher in species whose diet comprises vertebrates or scavenged food and whose foraging modes require resolving prey from farther away. Additionally, species that live in spatially complex, vegetative habitats have lower acuity than expected for their eye sizes. Together, our results suggest that the need to detect important objects from far away - such as predators for species that live in open habitats, and food items for species that forage on vertebrate and scavenged prey - has likely been a key driver of higher acuity in some species, helping us to elucidate how visual capabilities may be adapted to an animal's visual needs.


Subject(s)
Birds , Ecosystem , Humans , Animals , Visual Acuity , Diet/veterinary , Food , Predatory Behavior
9.
Ann Bot ; 133(7): 953-968, 2024 May 13.
Article in English | MEDLINE | ID: mdl-38366549

ABSTRACT

BACKGROUND AND AIMS: Secondary cell wall (SCW) thickening is a major cellular developmental stage determining wood structure and properties. Although the molecular regulation of cell wall deposition during tracheary element differentiation has been well established in primary growth systems, less is known about the gene regulatory processes involved in the multi-layered SCW thickening of mature trees. METHODS: Using third-generation [long-read single-molecule real-time (SMRT)] and second-generation [short-read sequencing by synthesis (SBS)] sequencing methods, we established a Pinus bungeana transcriptome resource with comprehensive functional and structural annotation for the first time. Using these approaches, we generated high spatial resolution datasets for the vascular cambium, xylem expansion regions, early SCW thickening, late SCW thickening and mature xylem tissues of 71-year-old Pinus bungeana trees. KEY RESULTS: A total of 79 390 non-redundant transcripts, 31 808 long non-coding RNAs and 5147 transcription factors were annotated and quantified in different xylem tissues at all growth and differentiation stages. Furthermore, using this high spatial resolution dataset, we established a comprehensive transcriptomic profile and found that members of the NAC, WRKY, SUS, CESA and LAC gene families are major players in early SCW formation in tracheids, whereas members of the MYB and LBD transcription factor families are highly expressed during late SCW thickening. CONCLUSIONS: Our results provide new molecular insights into the regulation of multi-layered SCW thickening in conifers. The high spatial resolution datasets provided can serve as important gene resources for improving softwoods.


Subject(s)
Cell Wall , Pinus , Xylem , Cell Wall/genetics , Cell Wall/metabolism , Pinus/genetics , Pinus/growth & development , Xylem/genetics , Xylem/growth & development , Transcriptome , Gene Expression Regulation, Plant , Genes, Plant , Wood/genetics , Wood/growth & development , Wood/anatomy & histology
10.
Acta Radiol ; : 2841851241271109, 2024 Aug 21.
Article in English | MEDLINE | ID: mdl-39169708

ABSTRACT

BACKGROUND: Photon-counting detector computed tomography (PCD-CT) is a groundbreaking technology with promising results for visualization of small bone structures. PURPOSE: To analyze the delineation of the thoracic spine in multiplanar reconstructions (MPR) on PCD-CT compared to energy-integrating detector (EID)-CT. MATERIAL AND METHODS: Two euthanized mice were examined using different scanners: (i) 20-slice EID-CT and (ii) dual-source PCD-CT at various CTDIVol values. Readers evaluated the thoracic spine and selected series with best visualization among signal-to-noise ratio (SNR)-matched pairs. RESULTS: SNR was significantly higher in PCD-CT reconstructions (Br68) and lower in Hr98 reconstructions compared to EID-CT. Bone detail visualization was superior in PCD-CT (especially in Hr98 reconstructions) compared to EID-CT. CONCLUSION: MPR on a PCD-CT had a higher SNR and better bone detail visualization even at lower radiation doses compared to EID-CT. PCD-CT with bone reconstructions showed the best delineation of small bone structures and might be considered in clinical routine.

11.
Proc Natl Acad Sci U S A ; 118(33)2021 08 17.
Article in English | MEDLINE | ID: mdl-34389680

ABSTRACT

Attention alters perception across the visual field. Typically, endogenous (voluntary) and exogenous (involuntary) attention similarly improve performance in many visual tasks, but they have differential effects in some tasks. Extant models of visual attention assume that the effects of these two types of attention are identical and consequently do not explain differences between them. Here, we develop a model of spatial resolution and attention that distinguishes between endogenous and exogenous attention. We focus on texture-based segmentation as a model system because it has revealed a clear dissociation between both attention types. For a texture for which performance peaks at parafoveal locations, endogenous attention improves performance across eccentricity, whereas exogenous attention improves performance where the resolution is low (peripheral locations) but impairs it where the resolution is high (foveal locations) for the scale of the texture. Our model emulates sensory encoding to segment figures from their background and predict behavioral performance. To explain attentional effects, endogenous and exogenous attention require separate operating regimes across visual detail (spatial frequency). Our model reproduces behavioral performance across several experiments and simultaneously resolves three unexplained phenomena: 1) the parafoveal advantage in segmentation, 2) the uniform improvements across eccentricity by endogenous attention, and 3) the peripheral improvements and foveal impairments by exogenous attention. Overall, we unveil a computational dissociation between each attention type and provide a generalizable framework for predicting their effects on perception across the visual field.


Subject(s)
Attention/physiology , Computer Simulation , Models, Biological , Visual Perception/physiology , Animals , Humans , Primates/physiology
12.
Sensors (Basel) ; 24(12)2024 Jun 08.
Article in English | MEDLINE | ID: mdl-38931519

ABSTRACT

The domain of gamma-ray imaging necessitates technological advancements to surmount the challenge of energy-selective imaging. Conventional systems are constrained in their dynamic focus on specific energy ranges, a capability imperative for differentiating gamma-ray emissions from diverse sources. This investigation introduces an innovative imaging system predicated on the detection of recoil electrons, addressing the demand for adjustable energy selectivity. Our methodology encompasses the design of a gamma-ray imaging system that leverages recoil electron detection to execute energy-selective imaging. The system's efficacy was investigated experimentally, with emphasis on the adaptability of the energy selection window. The experimental outcomes underscore the system's adeptness at modulating the energy selection window, adeptly discriminating gamma rays across a stipulated energy spectrum. The results corroborate the system's adaptability, with an adjustable energy resolution that coincides with theoretical projections and satisfies the established criteria. This study affirms the viability and merits of utilizing recoil electrons for tunable energy-selective gamma-ray imaging. The system's conceptualization and empirical validation represent a notable progress in gamma-ray imaging technology, with prospective applications extending from medical imaging to astrophysics. This research sets a solid foundation for subsequent inquiries and advancements in this domain.

13.
Sensors (Basel) ; 24(13)2024 Jul 02.
Article in English | MEDLINE | ID: mdl-39001074

ABSTRACT

A sensitive, miniaturized, ultrawideband probe is proposed for near-field measurements. The proposed probe is based on a new V-shaped tip design and a slope structure resulting in better field distribution and impedance matching with a span bandwidth from 10 kHz up to 52 GHz, which is compatible with ultrawideband applications. The proposed E-probe fabrication process utilizes a four-layer printed circuit board (PCB) using Rogers RO4003 (tm) and RO4450 high-performance dielectrics, with εr = 3.55 and 3.3, respectively. The probe length is 40 mm with a minimum width of 4 mm, which is suitable for narrow, complex, and integrated PCBs. The passive E-probe sensitivity is -106.29 dBm and -87.48 dBm at 2 GHz and 40 GHz, respectively. It has a very small spatial resolution of 0.5 mm at 20, 25, 30, and 35 GHz. The probe is small and cheap and can diagnose electromagnetic interference (EMI) in electronic systems such as telemetry, UAVs, and avionics.

14.
Sensors (Basel) ; 24(6)2024 Mar 15.
Article in English | MEDLINE | ID: mdl-38544144

ABSTRACT

Greenhouse gas satellites can provide consistently global CO2 data which are important inputs for the top-down inverse estimation of CO2 emissions and their dynamic changes. By tracking greenhouse gas emissions, policymakers and businesses can identify areas where reductions are needed most and implement effective strategies to reduce their impact on the environment. Monitoring greenhouse gases provides valuable data for scientists studying climate change. The requirements for CO2 emissions monitoring and verification support capacity drive the payload design of future CO2 satellites. In this study, we quantitatively evaluate the performance of satellite in detecting CO2 plumes from power plants based on an improved Gaussian plume model, with focus on impacts of the satellite spatial resolution and the satellite-derived XCO2 precision under different meteorological conditions. The simulations of CO2 plumes indicate that the enhanced spatial resolution and XCO2 precision can significantly improve the detection capability of satellite, especially for small-sized power plants with emissions below 6 Mt CO2/yr. The satellite-detected maximum of XCO2 enhancement strongly varies with the wind condition. For a satellite with a XCO2 precision of 0.7 ppm and a spatial resolution of 2 km, it can recognize a power plant with emissions of 2.69 Mt CO2/yr at a wind speed of 2 m/s, while its emission needs be larger than 5.1 Mt CO2/yr if the power plant is expected to be detected at a wind speed of 4 m/s. Considering the uncertainties in the simulated wind field, the satellite-derived XCO2 measurements and the hypothesized CO2 emissions, their cumulative contribution to the overall accuracy of the satellite's ability to identify realistic enhancement in XCO2 are investigated in the future. The uncertainties of ΔXCO2 caused by the uncertainty in wind speed is more significant than those introduced from the uncertainty in wind direction. In the case of a power plant emitting 5.1 Mt CO2/yr, with the wind speed increasing from 0.5 m/s to 4 m/s, the simulated ΔXCO2 uncertainty associated with the wind field ranges from 3.75 ± 2.01 ppm to 0.46 ± 0.24 ppm and from 1.82 ± 0.95 ppm to 0.22 ± 0.11 ppm for 1 × 1 km2 and 2 × 2 km2 pixel size, respectively. Generally, even for a wind direction with a higher overall uncertainty, satellite still has a more effective capability for detecting CO2 emission on this wind direction, because there is more rapid growth for simulated maximal XCO2 enhancements than that for overall uncertainties. A designed spatial resolution of satellite better than 1 km and a XCO2 precision higher than 0.7 ppm are suggested, because the CO2 emission from small-sized power plants is much more likely be detected when the wind speed is below 3 m/s. Although spatial resolution and observed precision parameters are not sufficient to support the full design of future CO2 satellites, this study still can provide valuable insights for enhancing satellite monitoring of anthropogenic CO2 emissions.

15.
Nano Lett ; 23(4): 1615-1621, 2023 Feb 22.
Article in English | MEDLINE | ID: mdl-36484776

ABSTRACT

Tip-enhanced Raman scattering (TERS) microscopy is an advanced technique for investigation at the nanoscale that provides topographic and chemical information simultaneously. The TERS probe plays a crucial role in the microscopic performance. In the recent past, the development of silver nanowire (AgNW) based TERS probes solved the main tip fabrication issues, such as low mechanical strength and reproducibility. However, this fabrication method still suffers from low control of the protruded length of the AgNW. In this work, a simple water-air interface electrocutting method is proposed to achieve wide controllability of the length. This water cutting method was combined with a succedent Au coating on the AgNW surface, and the probe achieved an up to 100× higher enhancement factor (EF) and a 2× smaller spatial resolution compared to pristine AgNW. Thanks to this excellent EF, the water-cut Au-coated AgNW probes were found to possess high TERS activity even in the nongap mode, enabling broad applications.

16.
J Biol Phys ; 2024 Aug 03.
Article in English | MEDLINE | ID: mdl-39096435

ABSTRACT

The evolutionary origin of the inverted retina in the vertebrate eye is unknown. This paper explores a hypothetical evolutionary scenario that explains the unique orientation of the photoreceptors in the vertebrate retina. The proposed scenario follows the scientific accepted scenario for eye evolution and gradually builds up towards an eye prototype by considering light direction detection and increase in achievable spatial resolution as the driving forces. It suggests that eye retinas developed along two different morphological processes, an evagination process that results in the inverted retina in vertebrate eyes and an invagination process that results in a verted retina in cephalopod eyes. The development of the inverted vertebrate retina and eye prototype morphology is strongly substantiated by physics of vision. The proposed evolutionary sequence for vertebrate eye development is simple and has the full potential to explain the origin of the inverted retina and leads to an eye prototype enabling visual detection and orientation. It allows the emergence of eye structures like, extraocular muscles, tapetum lucidum, biconvex lens, cornea, and pupil. This study supports the suggestion that a primitive inverted retina in the predecessor of vertebrates is of ectodermal origin and available before neurulation occurred.

17.
Environ Monit Assess ; 196(3): 254, 2024 Feb 12.
Article in English | MEDLINE | ID: mdl-38342848

ABSTRACT

Changes in glacier area, glacial lakes, debris cover, and geomorphological features such as debris fans have a significant impact on glacial dynamics. Therefore, precise and timely observation and tracking of glacier surface changes is a necessity. The availability of high spatial resolution remote sensing images has made it viable to analyse the glacier surface changes at a local level. However, with an increase in spatial resolution, the spectral variability increases, giving rise to additional challenges (such as false changes and misregistration) in the change detection process. These challenges can preferably be dealt with using an object-based change detection (OBCD) approach rather than the conventional pixel-based change detection approach. Therefore, this study has proposed an OBCD methodology using high-spatial-resolution remote sensing images to detect changes in glacier features. Variability in glacier features has been further analysed by associating it with important climate variables, that is, air temperature and precipitation. As a case study, the changes in Gangotri Glacier (Uttarakhand Himalayas in India) features have been studied using high-spatial-resolution WorldView-2 and Linear Imaging Self-Scanning System (LISS)-4 images for a 3-year period 2011-2014. The spectral correspondences between glacier surface and non-glacier surface have been handled by considering brightness temperature and slope as ancillary data to improvise their distinction. A change detection accuracy of ~ 84% has been obtained using the OBCD approach. Results further show that the variations in glacier features are in congruence with the climatic observations.


Subject(s)
Environmental Monitoring , Ice Cover , Temperature , Lakes , India , Climate Change
18.
Environ Monit Assess ; 196(2): 167, 2024 Jan 18.
Article in English | MEDLINE | ID: mdl-38233696

ABSTRACT

The study investigates the influence of multispectral satellite data's spatial resolution on land degradation in the Urmodi River Watershed in which Kaas Plateau, a UNESCO World Heritage site, is located. Specifically, the research focuses on soil erosion and its risk zonation. The study employs Landsat 8 (30-m resolution) and Sentinel-2 (10-m resolution) data to assess soil erosion risk. The Revised Universal Soil Loss Equation (RUSLE) is used to quantify the average annual soil erosion output denoted by (A), by using its factors such as rainfall (R), soil erodibility (K), slope-length (LS), cover management (C), and support practices (P). R-factor was computed from MERRA-2 rainfall data, K-factor was derived from field soil sample-based analysis, LS factor was from Cartosat Digital Elevation Model-based data. The C factor was derived from NDVI of Landsat 8 and Sentinel-2, and the P factor was prepared from LULC derived from Landsat 8, and Sentinel-2 was incorporated in the final integration. The soil erosion hazard map ranged from slight to extremely severe. Remote sensing (RS)-based parameters like Land Use Land Cover (LULC) are derived from the Landsat 8 and Sentine-2 satellite data and used to compute the difference in the final outcome of the integration. The study found similarities in average annual soil loss (A) in plain areas, but differences in final soil erosion risk zone (A) were influenced by LULC map variations due to different cell sizes, P factor, and slope gradient. Notable differences were observed in soil erosion risk categories, particularly in high to very severe zones, with a cumulative difference of 73.85 km2. In addition to this, a scatterplot between the final outputs was computed and found the moderate (R2 = 42.08%) correlation between Landsat 8 and Sentinel-2 imagery-based final average annual soil erosion (A) of RUSLE. The study area encompasses various landforms ranging from the plateau to pediplain, and in such situation, the water-led soil erosion categories vary depending on terrain condition along with its biophysical factors and, hence, need to analyze the need of such factors on the average annual soil erosion quantification. Different spatial resolution has an effect on the final output, and hence, there is a need to track this change at various spatial resolutions. This analysis highlights the significant impact of spatial resolution on land degradation assessment, providing precise identification of surface features and enhancing soil erosion risk zoning accuracy.


Subject(s)
Rivers , Soil , Geographic Information Systems , India , Environmental Monitoring , Conservation of Natural Resources , Models, Theoretical
19.
J Chem Educ ; 101(2): 514-520, 2024 Feb 13.
Article in English | MEDLINE | ID: mdl-39070090

ABSTRACT

Single-molecule localization microscopy (SMLM) has revolutionized our ability to visualize cellular structures, offering unprecedented detail. However, the intricate biophysical principles that underlie SMLM can be daunting for newcomers, particularly undergraduate and graduate students. To address this challenge, we introduce the fundamental concepts of SMLM, providing a solid theoretical foundation. In addition, we have developed an intuitive graphical interface APP that simplifies these core concepts, making them more accessible for students. This APP clarifies how super-resolved images are fitted and highlights the crucial factors determining image quality. Our approach deepens students' understanding of SMLM by combining theoretical instruction with practical learning. This development equips them with the skills to carry out single-molecule super-resolved experiments and explore the microscopic world beyond the diffraction limit.

20.
Angew Chem Int Ed Engl ; 63(8): e202317631, 2024 Feb 19.
Article in English | MEDLINE | ID: mdl-38126932

ABSTRACT

Organic ultra-long room-temperature phosphorescence (RTP) materials in the amorphous state have attracted widespread attention due to their simple preparation and flexibility to adopt various forms in sensors, bioimaging, and encryption applications. However, the amorphous molecular host for the host-guest RTP systems is highly demanded but limited. Here, a universal molecular host (DPOBP-Br) has been designed by integration of an amorphous moiety of diphenylphosphine oxide (DPO) and an intersystem crossing (ISC) group of 4-bromo-benzophenone (BP-Br). Various commercial fluorescence dyes were doped into the tight and transparent DPOBP-Br film, respectively, resulting in amorphous host-guest systems with ultra-long RTP colors from green to red. It was found that DPOBP-Br acted as a universal "triplet exciton pump" for promoting the generation of triplet excitons in the guest, through energy transfer processes and external heavy-atom effect based on DPOBP-Br. Interestingly, dynamic RTP was achieved by controlling residual oxygen concentration in the amorphous matrix by UV irradiation. Therefore, multi-dimensional anti-counterfeiting coatings were realized even on curved surfaces, simultaneously exhibiting spatial and 2D-time dependence. This work provides a strategy to design new amorphous molecular hosts for RTP systems and demonstrates the advanced information encryption with tempo-spatial resolution based on the dynamic ultra-long RTP of an amorphous system.

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