Contrasting responses of native and introduced mammal communities to fire mosaics in a modified landscape.

Planned fire is increasingly recognized as an important tool in conservation, but other factors such as land-use change may hinder the ability of land managers to use fire for the benefit of biodiversity. The mosaic of past fires in native vegetation may interact with the mosaic of other land-cover types in human-modified landscapes, yet the effects of these interactions on mammal communities are unknown. We investigated the responses of ground-dwelling mammal community composition and species richness to interactions between land cover and post-fire vegetation growth-stage mosaics in southern Australia. This fire-prone, human-modified landscape features a fine-scale fire mosaic in native vegetation patches surrounded by pasture, horticulture, and peri-urban environments. We measured the composition of land-cover types and fire mosaics (landscape structure) at multiple scales of up to 1257 ha surrounding 129 study sites, and considered native and introduced species together and separately. Land-cover composition was the primary driver of community composition: native species favored areas with a greater proportion of native heathy woodland, whereas introduced species were associated with landscapes comprising more cleared land. The fire mosaic also influenced community composition and species richness: greater growth-stage diversity was associated with native habitat-specialist communities and fewer introduced species. In areas with more cleared land, native species richness increased when there was a greater proportion of mid-successional vegetation, demonstrating that the effect of fire mosaics on mammal diversity depended on land-cover composition. The positive relationship between introduced species richness and cleared land extent was also stronger in recently burned sites than in other growth stages, suggesting that introduced species are well suited to more modified areas of the landscape. Land managers need to consider the underlying land-cover composition and the potential interactions it may have with fire mosaics and species composition. In this landscape a greater diversity of growth stages may disadvantage introduced species yet an increase in mid-successional vegetation in more modified areas would be likely to benefit native mammal communities. Our study highlights that fire management may need to be tailored depending on the context of land use and the species of interest.

Seascape genomics reveals adaptive divergence in a connected and commercially important mollusc, the greenlip abalone (Haliotis laevigata), along a longitudinal environmental gradient.

Populations of broadcast spawning marine organisms often have large sizes and are exposed to reduced genetic drift. Under such scenarios, strong selection associated with spatial environmental heterogeneity is expected to drive localized adaptive divergence, even in the face of connectivity. We tested this hypothesis using a seascape genomics approach in the commercially important greenlip abalone (Haliotis laevigata). We assessed how its population structure has been influenced by environmental heterogeneity along a zonal coastal boundary in southern Australia linked by strong oceanographic connectivity. Our data sets include 9,109 filtered SNPs for 371 abalones from 13 localities and environmental mapping across ~800 km. Genotype-environment association analyses and outlier tests defined 8,786 putatively neutral and 323 candidate adaptive loci. From a neutral perspective, the species is better represented by a metapopulation with very low differentiation (global FST  = 0.0081) and weak isolation by distance following a stepping-stone model. For the candidate adaptive loci, however, model-based and model-free approaches indicated five divergent population clusters. After controlling for spatial distance, the distribution of putatively adaptive variation was strongly correlated to selection linked to minimum sea surface temperature and oxygen concentration. Around 80 candidates were annotated to genes with functions related to high temperature and/or low oxygen tolerance, including genes that influence the resilience of abalone species found in other biogeographic regions. Our study includes a documented example about the uptake of genomic information in fisheries management and supports the hypothesis of adaptive divergence due to coastal environmental heterogeneity in a connected metapopulation of a broadcast spawner.

A survey on bloat in southern Australian beef production systems.

Frothy bloat, associated predominantly with grazing legume-based pastures, is considered the second most costly disease in beef cattle in southern Australia, costing $84.4 M annually. It frequently results in the sudden death of cattle. In response to concerns from cattle producers, an online survey was conducted in southern Australia in late 2020 to determine the impact of bloat, identify risk factors and determine the efficacy of current preventive measures. For 217 responses, over two-thirds (70%) of producers reported bloat occurring in the previous 12 months, with estimated morbidity and mortality rates of 3.7% and 5.0% respectively. Bloat was associated with clover or clover-dominant paddocks (79%) and was not associated with grass or grass-dominant pastures or low clover pastures (92%) nor grazing crops (27%). For bloat that occurred in the past 12 months, cattle were very commonly grazing on clover or clover-dominant paddocks (90%) and occasionally lucerne-dominated paddocks (7%). Two-thirds of producers reported having preventive measures in place when losses occurred. Bayesian Network analysis confirmed that grazing clover-based pastures for more than 7 days, yearling cattle and the months of July-September were the main risk factors for bloat occurrence, with pasture type (clover) being the most important. Conversely, no clear relationship between weather conditions and bloat occurrence was evident. This survey highlights the known risk of clover-based pastures for causing bloat in cattle, and that losses occur in many cases despite preventive measures being used. This suggests that current methods for preventing bloat in cattle are suboptimal.

A Cross-Sectional Study of Commercial Ewe Management Practices for Different Sheep Breeds across Southern Australia.

The management of ewes across southern Australia may vary with breed and can change over time and, as such, a greater understanding of producer management practices and the motivations that influence these practices is required. A cross-sectional study was performed by telephone interview with sheep producers managing Composite, Maternal, Merino or shedding ewe breeds mated in either spring, summer, or autumn. The surveyed producers were a unique subset of southern Australian producers. A large proportion of the surveyed producers followed current best practice guidelines for ewe mating and lambing nutritional management; however, some producers did not align with these targets. Further, some producers did not see the value in attaining the current recommendations. Pregnancy scanning was widely practiced, likely an artefact of the recruitment process; however, a few producers did not utilize this information for nutritional management at lambing time. Finally, most producers were active in their search for new information, seeking information regularly from a wide range of sources and reported making management changes within the last five years. Further work is required to understand why some producers are not adopting best practice where possible and to understand current barriers for adoption. Management guidelines for all sheep breeds are required to best manage sheep across southern Australia.

Robbery in progress: Historical museum collections bring to light a mitochondrial capture within a bird species widespread across southern Australia, the Copperback Quail-thrush Cinclosoma clarum.

We surveyed mitochondrial, autosomal, and Z chromosome diversity within and between the Copperback Quail-thrush Cinclosoma clarum and Chestnut Quail-thrush C. castanotum, which together span the arid and semi-arid zones of southern Australia, and primarily from specimens held in museum collections. We affirm the recent taxonomic separation of the two species and then focus on diversity within the more widespread of the two species, C. clarum. To guide further study of the system and what it offers to understanding the genomics of the differentiation and speciation processes, we develop and present a hypothesis to explain mitonuclear discordance that emerged in ourdata. Following a period of historical allopatry, secondary contact has resulted in an eastern mitochondrial genome replacing the western mitochondrial genome in western populations. This is predicted under a population-level invasion in the opposite direction, that of the western population invading the range of the eastern one. Mitochondrial captures can be driven by neutral, demographic processes, or adaptive mechanisms, and we favor the hypothesized capture being driven by neutral means. We cannot fully reject the adaptive process but suggest how these alternatives may be further tested. We acknowledge an alternative hypothesis, which finds some support in phenotypic data published elsewhere, namely that outcomes of secondary contact have been more complex than our current genomic data suggest. Discriminating and reconciling these two alternative hypotheses, which may not be mutually exclusive, could be tested with closer sampling at levels of population, individual, and nucleotide than has so far been possible. This would be further aided by knowledge of the genetic basis to phenotypic variation described elsewhere.

The "minute diving beetles" of southern Australia - taxonomic revision of Gibbidessus Watts, 1978, with description of six new species (Coleoptera, Dytiscidae, Bidessini).

Morphology and mitochondrial DNA sequence data are used to reassess the taxonomy of Australian diving beetles previously assigned to the genera Uvarus Guignot, 1939 and Gibbidessus Watts, 1978. Gibbidessus was described as a monotypic genus for Gibbidessus chipi Watts, 1978. The genus is significantly extended here. Based on molecular systematic evidence, Uvarus pictipes (Lea, 1899) is transferred to Gibbidessus. Gibbidessus chipi and Gibbidessus pictipes comb. nov. are redescribed, and six new species are described: Gibbiddessus atomus sp. nov. (SW Australia, Northcliffe area) [the smallest epigean diving beetle in Australia], G. davidi sp. nov. (SW Australia), G. drikdrikensis sp. nov. (Victoria), G. kangarooensis sp. nov. (SA Kangaroo Island), G. pederzanii sp. nov. (SW Australia, Nannup area), and G. rottnestensis sp. nov. (SW Australia). Species are delineated using characters such as male genital structure and beetle size, shape and colour pattern. Mitochondrial Cox1 data for 27 individuals, representing five species, were generated, and revealed clusters congruent with the morphological evidence. Gibbidessus occur in southern Australia, with the centre of diversification in the isolated peat- and wetlands of SW Australia. All species occur in very shallow water of seasonal, exposed or half-shaded wetlands and flooded meadows.

A study of the chemical diversity of macroalgae from South Eastern Australia.

Macroalgae are a rich source of biologically active chemical diversity for pharmaceutical and agrichemical discovery. However, the ability to understand the complexities of their chemical diversity will dictate whether these natural products have a place in modern discovery paradigms. In this study, we examined the relationship between secondary metabolite production and biological activity for a cohort of 127 macroalgae samples collected from various locations across South Eastern Australia. Approximately 20% of the macroalgae samples showed high levels of chemical diversity and productivity, which also correlated strongly with bioactivity. These "talented" species represent sustainable sources of metabolites that may be readily harvested for large-scale production. At a taxonomic level, significant differences in metabolite production and diversity were observed between Chlorophyta, Rhodophyta and Phaeophyta. For each talented species, the cometabolite pattern was unique to that species, with closely related species within the same genus displaying very different profiles. Despite over 50years of investigation, we estimate that more than two-thirds of the chemical diversity of macroalgae remains unknown to science. By understanding the physicochemical properties and distribution patterns of metabolites, it is possible to make reasoned judgements about sustainable sourcing of macroalgae for biodiscovery.

Benthic biogeographic patterns in the southern Australian deep sea: Do historical museum records accord with recent systematic, but spatially limited, survey data?

AIM: To document biogeographic patterns in the deepwater benthic epifauna and demersal fishes of southern Australia, and determine whether museum records and systematic survey data provide matching results. LOCATION: Southern Australian (32-44oS) continental slope (200-3,000 m deep). TAXON: Marine benthic fauna (Arthropoda, Bryozoa, Cnidaria, Echinodermata, Mollusca, Porifera, Sipuncula, and fishes). METHODS: All available electronic records of fauna from the above taxa and ≥200 m depth off the southern Australian coastline, regardless of organism size, were collated from Australian museums and checked for geographic and taxonomic consistency. These records were then split into 40 geographic segments of roughly equal numbers, with each segment then treated as a sample in multivariate analyses of assemblage composition. Data from a recent (2015) systematic beam trawl survey along five north-south transects in the central Great Australian Bight were also included for comparison. MAIN CONCLUSIONS: The systematic survey data grouped with the associated geographic segments despite differences in sampling technique (single gear compared to multiple gears), with subsequent differences in taxonomic biases, and the use of a 25 mm mesh, which would undersample some smaller organisms present in the museum data. Thus, the museum data and the survey data provided the same results for the central Great Australian Bight at the level of the whole assemblage. The main biogeographic break occurred off southeastern Tasmania, with a second substantial break occurring at around the border between New South Wales and Victoria. This indicates the potential for unused museum data to describe biogeographic patterns over regional spatial scales, especially in the deep sea where the expense of collecting new data is relatively high.

A new species of Gonionemus (Hydrozoa: Limnomedusae) from southern Australia.

A new species of a crawling limnomedusa belonging to the genus Gonionemus (Hydrozoa: Limnomedusae: Olindiidae) was collected from the brown alga Cystophora monilifera in an intertidal rock pool in Western Port, Victoria, Australia. The new species is described and compared with the three known species of Gonionemus. The mitochondrial DNA barcode markers cytochrome oxidase I and 16S rRNA were sequenced and compared to sequences from other olindiid species. The sequencing results corroborate the morphological findings.

Submarine groundwater discharge from the South Australian Limestone Coast region estimated using radium and salinity.

The Tertiary Limestone Aquifer (TLA) is one of the major regional hydrogeological systems of southern Australia. Submarine groundwater discharge (SGD) of freshwater from the TLA occurs through spring creeks, beach springs and diffusively through beach sands, but the magnitude of the total flux is not known. Here, a range of potential environmental tracers (including temperature, salinity, (222)Rn, (223)Ra, (224)Ra, (226)Ra, (228)Ra, and (4)He) were measured in potential sources of SGD and in seawater along a 45 km transect off the coastline to evaluate SGD from the TLA. Whilst most tracers had a distinct signature in the sources of water to the coastline, salinity and the radium quartet had the most distinct SGD signal in seawater. A one-dimensional advection-dispersion model was used to estimate the terrestrial freshwater component of SGD (Qfw) using salinity and the recirculated seawater component (Qrsw) using radium activity in seawater. Qfw was estimated at 1.2-4.6 m(3) s(-1), similar in magnitude to previously measured spring creek discharge (∼3 m(3) s(-1)) for the area. This suggests that other terrestrial groundwater discharge processes (beach springs and diffuse discharge through beach sands) were no more than 50% of spring creek discharge. The largest component of total SGD was Qrsw, estimated at 500-1000 m(3) s(-1) and possibly greater. The potential for wave, storm, or buoyancy-driven porewater displacement from the seafloor could explain the large recirculation flux for this section of the Southern Ocean Continental Shelf.