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1.
Molecules ; 29(4)2024 Feb 08.
Article in English | MEDLINE | ID: mdl-38398549

ABSTRACT

The iminosugar 1-deoxynojirimicyn (DNJ) contained in mulberry leaves has displayed systemic beneficial effects against disorders of carbohydrate metabolism. Nevertheless, its effect is impaired by the short half-life. Alginate-based carriers were developed to encapsulate a DNJ-rich mulberry extract: Ca-alginate beads, obtained by external gelation, and spray-dried alginate microparticles (SDMs). Mean size and distribution, morphology, drug loading, encapsulation efficiency, experimental yield, and release characteristics were determined for the two formulations. Ca-alginate beads and SDMs exhibited an encapsulation efficiency of about 54% and 98%, respectively, and a DNJ loading in the range of 0.43-0.63 µg/mg. The in vitro release study demonstrated the carriers' capability in controlling the DNJ release in acid and basic conditions (<50% in 5 h), due to electrostatic interactions, which were demonstrated by 1H-NMR relaxometry studies. Thus, alginate-based particles proved to be promising strategies for producing food supplements containing mulberry leaf extracts for the management of hyperglycemic state.


Subject(s)
Alginates , Morus , Alginates/metabolism , 1-Deoxynojirimycin/chemistry , Morus/chemistry , Dietary Supplements , Plant Extracts/chemistry , Plant Leaves/metabolism
2.
J Org Chem ; 87(24): 16895-16901, 2022 12 16.
Article in English | MEDLINE | ID: mdl-36460300

ABSTRACT

Three different Mitsunobu reactions have been investigated for the synthesis of 1-deoxymannojirimycin (1-DMJ) from d-fructose. The highest yielding and most practical synthesis can be undertaken on a 10 g scale with minimal chromatography. In the key step, N,O-di-Boc-hydroxylamine reacts with methyl 1,3-isopropylidene-α-d-fructofuranose under Mitsunobu conditions to give 14. Acidic hydrolysis affords nitrone 15, which reduces quantitatively via catalytic hydrogenolysis to afford 1-DMJ (4) in 55% overall yield from d-fructose (cf. 37% for azide route and 29% for nosyl route).


Subject(s)
1-Deoxynojirimycin , Fructose , 1-Deoxynojirimycin/chemistry , Fructose/chemistry
3.
Org Biomol Chem ; 20(36): 7250-7260, 2022 09 21.
Article in English | MEDLINE | ID: mdl-35838176

ABSTRACT

L-ido-Deoxynojirimycin (L-ido-DNJ) itself showed no affinity for human lysosomal acid α-glucosidase (GAA), whereas 5-C-methyl-L-ido-DNJ showed a strong affinity for GAA, comparable to the glucose analog DNJ, with a Ki value of 0.060 µM. This excellent affinity for GAA and enzyme stabilization was observed only when methyl and ethyl groups were introduced. Docking simulation analysis revealed that the alkyl chains of 5-C-alkyl-L-ido-DNJs were stored in three different pockets, depending on their length, thereby the molecular orientation was changed. Comparison of the binding poses of DNJ and 5-C-methyl-L-ido-DNJ showed that they formed a common ionic interaction with Asp404, Asp518, and Asp616, but both the binding orientation and the distance between the ligand and each amino acid residue were different. 5-C-Methyl-L-ido-DNJ dose-dependently increased intracellular GAA activity in Pompe patient fibroblasts with the M519V mutation and also promoted enzyme transport to lysosomes. This study provides the first example of a strategy to design high-affinity ligands by introducing alkyl branches into rare sugars and L-sugar-type iminosugars to change the orientation of binding.


Subject(s)
1-Deoxynojirimycin , Glycoside Hydrolase Inhibitors , Imino Sugars , alpha-Glucosidases , 1-Deoxynojirimycin/chemistry , 1-Deoxynojirimycin/pharmacology , Amino Acids , Catalytic Domain , Glucose/analogs & derivatives , Glycoside Hydrolase Inhibitors/chemistry , Glycoside Hydrolase Inhibitors/pharmacology , Humans , Imino Sugars/chemistry , Imino Sugars/pharmacology , Ligands , Protein Binding , alpha-Glucosidases/chemistry
4.
Anal Biochem ; 630: 114339, 2021 10 01.
Article in English | MEDLINE | ID: mdl-34411552

ABSTRACT

This article reports results of one of our projects related to the investigation of interactions of miglitol (MIG) with normal human serum albumin (HSA) and glycated HSA (GHSA) with the help of recording spectroscopic and electrochemical data. The experimental data were analyzed by conventional and chemometric methods to extract useful information for comprehensive justifications of the interactions of the MIG with HSA and GHSA. Hard- and soft-modeling chemometric methods were used to extract quantitative and qualitative information. Then, molecular docking techniques were used to further investigation of the binding of the MIG with HSA and GHSA and the extracted results were compatible with those obtained by experimental methods. Finally, according to the binding of the BV with HSA and GHSA, second-order differential pulse voltammetric data were recorded and calibrated with three-way calibration methods for exploiting second-order advantage for determination of the GHSA in the presence of the HSA to develop a novel chemometrics assisted-electroanalytical method for diagnostic and monitoring of diabetic.


Subject(s)
1-Deoxynojirimycin/analogs & derivatives , Electrochemical Techniques , Molecular Docking Simulation , Serum Albumin, Human/chemistry , 1-Deoxynojirimycin/chemistry , Binding Sites , Humans , Software , Spectrometry, Fluorescence , Spectrophotometry, Ultraviolet
5.
J Enzyme Inhib Med Chem ; 36(1): 138-146, 2021 Dec.
Article in English | MEDLINE | ID: mdl-33228403

ABSTRACT

We have designed unprecedented cholinesterase inhibitors based on 1-deoxynojirimycin as potential anti-Alzheimer's agents. Compounds are comprised of three key structural motifs: the iminosugar, for interaction with cholinesterase catalytic anionic site (CAS); a hydrocarbon tether with variable lengths, and a fragment derived from 2-phenylethanol for promoting interactions with peripheral anionic site (PAS). Title compounds exhibited good selectivity towards BuChE, strongly depending on the substitution pattern and the length of the tether. The lead compounds were found to be strong mixed inhibitors of BuChE (IC50 = 1.8 and 1.9 µM). The presumptive binding mode of the lead compound was analysed using molecular docking simulations, revealing H-bond interactions with the catalytic subsite (His438) and CAS (Trp82 and Glu197) and van der Waals interactions with PAS (Thr284, Pro285, Asn289). They also lacked significant antiproliferative activity against tumour and non-tumour cells at 100 µM, making them promising new agents for tackling Alzheimer's disease through the cholinergic approach.


Subject(s)
1-Deoxynojirimycin/pharmacology , Butyrylcholinesterase/metabolism , Cholinesterase Inhibitors/pharmacology , 1-Deoxynojirimycin/chemical synthesis , 1-Deoxynojirimycin/chemistry , Animals , Cholinesterase Inhibitors/chemical synthesis , Cholinesterase Inhibitors/chemistry , Dose-Response Relationship, Drug , Horses , Molecular Docking Simulation , Molecular Structure , Structure-Activity Relationship
6.
Molecules ; 26(19)2021 Sep 27.
Article in English | MEDLINE | ID: mdl-34641408

ABSTRACT

Among carbohydrate-processing enzymes, Jack bean α-mannosidase (JBα-man) is the glycosidase with the best responsiveness to the multivalent presentation of iminosugar inhitopes. We report, in this work, the preparation of water dispersible gold nanoparticles simultaneously coated with the iminosugar deoxynojirimycin (DNJ) inhitope and simple monosaccharides (ß-d-gluco- or α-d-mannosides). The display of DNJ at the gold surface has been modulated (i) by using an amphiphilic linker longer than the aliphatic chain used for the monosaccharides and (ii) by presenting the inhitope, not only in monomeric form, but also in a trimeric fashion through combination of a dendron approach with glyconanotechnology. The latter strategy resulted in a strong enhancement of the inhibitory activity towards JBα-man, with a Ki in the nanomolar range (Ki = 84 nM), i.e., more than three orders of magnitude higher than the monovalent reference compound.


Subject(s)
1-Deoxynojirimycin/administration & dosage , Canavalia/enzymology , Enzyme Inhibitors/administration & dosage , Gold/chemistry , Metal Nanoparticles/administration & dosage , alpha-Mannosidase/antagonists & inhibitors , 1-Deoxynojirimycin/chemistry , Enzyme Inhibitors/chemistry , Metal Nanoparticles/chemistry
7.
J Am Chem Soc ; 142(40): 16965-16973, 2020 10 07.
Article in English | MEDLINE | ID: mdl-32877175

ABSTRACT

Carbohydrate side chain conformation confers a significant influence on reactivity during glycosylation and anomeric bond hydrolysis due to stabilization of the oxocarbenium-like transition state. By analysis of 513 pyranoside-bound glycoside hydrolase (GH) crystal structures, we determine that most glucosidases and ß-mannosidases preferentially bind their substrates in the most reactive gauche,gauche (gg) conformation, thereby maximizing stabilization of the corresponding oxocarbenium ion-like transition state during hydrolysis. α-Galactoside hydrolases mostly show a preference for the second most activating gauche,trans (gt) conformation to avoid the energy penalty that would arise from imposing the gg conformation on galacto-configured ligands. These preferences stand in stark contrast to the side chain populations observed for these sugars both in free solution and bound to nonhydrolytic proteins, where for the most part a much greater diversity of side chain conformations is observed. Analysis of sequences of GH-ligand complexes reveals that side chain restriction begins with the enzyme-substrate complex and persists through the transition state until release of the hydrolysis product, despite changes in ring conformation along the reaction coordinate. This work will inform the design of new generations of glycosidase inhibitors with restricted side chains that confer higher selectivity and/or affinity.


Subject(s)
Carbohydrates/chemistry , Enzyme Inhibitors/chemistry , Glycoside Hydrolases/chemistry , 1-Deoxynojirimycin/chemistry , Carbohydrate Conformation , Crystallography, X-Ray , Glycoside Hydrolases/antagonists & inhibitors , Glycosylation , Hydrolysis , Indolizines/chemistry , Ligands , Models, Molecular , Neuraminic Acids/chemistry , Phase Transition , Protein Binding , Protein Stability
8.
Hum Genet ; 139(5): 657-673, 2020 May.
Article in English | MEDLINE | ID: mdl-32219518

ABSTRACT

GM1-gangliosidosis, a lysosomal storage disorder, is associated with ~ 161 missense variants in the GLB1 gene. Affected patients present with ß-galactosidase (ß-Gal) deficiency in lysosomes. Loss of function in ER-retained misfolded enzymes with missense variants is often due to subcellular mislocalization. Deoxygalactonojirimycin (DGJ) and its derivatives are pharmaceutical chaperones that directly bind to mutated ß-Gal in the ER promoting its folding and trafficking to lysosomes and thus enhancing its activity. An Emirati child has been diagnosed with infantile GM1-gangliosidosis carrying the reported p.D151Y variant. We show that p.D151Y ß-Gal in patient's fibroblasts retained < 1% residual activity due to impaired processing and trafficking. The amino acid substitution significantly affected the enzyme conformation; however, p.D151Y ß-Gal was amenable for partial rescue in the presence of glycerol or at reduced temperature where activity was enhanced with ~ 2.3 and 7 folds, respectively. The butyl (NB-DGJ) and nonyl (NN-DGJ) derivatives of DGJ chaperoning function were evaluated by measuring their IC50s and ability to stabilize the wild-type ß-Gal against thermal degradation. Although NN-DGJ showed higher affinity to ß-Gal, it did not show a significant enhancement in p.D151Y ß-Gal activity. However, NB-DGJ promoted p.D151Y ß-Gal maturation and enhanced its activity up to ~ 4.5% of control activity within 24 h which was significantly increased to ~ 10% within 6 days. NB-DGJ enhancement effect was sustained over 3 days after washing it out from culture media. We therefore conclude that NB-DGJ might be a promising therapeutic chemical chaperone in infantile GM1 amenable variants and therefore warrants further analysis for its clinical applications.


Subject(s)
1-Deoxynojirimycin/pharmacology , Fibroblasts/metabolism , Gangliosidosis, GM1/metabolism , Mutant Proteins/metabolism , Mutation , Protein Processing, Post-Translational/drug effects , beta-Galactosidase/metabolism , 1-Deoxynojirimycin/chemistry , Child, Preschool , Endoplasmic Reticulum Stress/drug effects , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Fibroblasts/drug effects , Fibroblasts/pathology , Gangliosidosis, GM1/drug therapy , Gangliosidosis, GM1/pathology , Humans , Lysosomes/drug effects , Lysosomes/metabolism , Lysosomes/pathology , Male , Molecular Chaperones/pharmacology , Mutant Proteins/chemistry , Mutant Proteins/genetics , Protein Conformation , Protein Transport , beta-Galactosidase/chemistry , beta-Galactosidase/genetics
9.
Bioorg Med Chem Lett ; 30(2): 126796, 2020 01 15.
Article in English | MEDLINE | ID: mdl-31757669

ABSTRACT

Dysregulation of the ceramide transport protein CERT is associated to diseases such as cancer. In search for new CERT START domain ligands, N-dodecyl-deoxynojirimycin (N-dodecyl-DNJ) iminosugar was found to display, as a ceramide mimic, significant protein recognition. To reinforce the lipophilic interactions and strengthen this protein binding, a docking study was carried out in order to select the optimal position on which to introduce an additional O-alkyl chain on N-dodecyl-DNJ. Analysis of the calculated poses for three different regioisomers indicated an optimal calculated interaction pattern for N,O3-didodecyl-DNJ. The two most promising regioisomers were prepared by a divergent route and their binding to the CERT START domain was evaluated with fluorescence intensity (FLINT) binding assay. N,O3-didodecyl-DNJ was confirmed to be a new binder prototype with level of protein recognition in the FLINT assay comparable to the best known ligands from the alkylated HPA-12 series. This work opens promising perspectives for the development of new inhibitors of CERT-mediated ceramide trafficking.


Subject(s)
Glucosamine/analogs & derivatives , Protein Serine-Threonine Kinases/chemistry , 1-Deoxynojirimycin/chemistry , 1-Deoxynojirimycin/metabolism , Binding Sites , Ceramides/metabolism , Glucosamine/chemistry , Glucosamine/metabolism , Glycoside Hydrolases/antagonists & inhibitors , Glycoside Hydrolases/metabolism , Humans , Ligands , Molecular Docking Simulation , Protein Binding , Protein Domains , Protein Serine-Threonine Kinases/metabolism , Stereoisomerism , Thermodynamics
10.
Int J Mol Sci ; 21(9)2020 May 09.
Article in English | MEDLINE | ID: mdl-32397443

ABSTRACT

Iminosugars are sugar analogues endowed with a high pharmacological potential. The wide range of biological activities exhibited by these glycomimetics associated with their excellent drug profile make them attractive therapeutic candidates for several medical interventions. The ability of iminosugars to act as inhibitors or enhancers of carbohydrate-processing enzymes suggests their potential use as therapeutics for the treatment of cystic fibrosis (CF). Herein we review the most relevant advances in the field, paying attention to both the chemical synthesis of the iminosugars and their biological evaluations, resulting from in vitro and in vivo assays. Starting from the example of the marketed drug NBDNJ (N-butyl deoxynojirimycin), a variety of iminosugars have exhibited the capacity to rescue the trafficking of F508del-CFTR (deletion of F508 residue in the CF transmembrane conductance regulator), either alone or in combination with other correctors. Interesting results have also been obtained when iminosugars were considered as anti-inflammatory agents in CF lung disease. The data herein reported demonstrate that iminosugars hold considerable potential to be applied for both therapeutic purposes.


Subject(s)
Cystic Fibrosis/drug therapy , Heterocyclic Compounds, 1-Ring/therapeutic use , 1-Deoxynojirimycin/analogs & derivatives , 1-Deoxynojirimycin/chemistry , 1-Deoxynojirimycin/therapeutic use , Anti-Inflammatory Agents/chemistry , Anti-Inflammatory Agents/therapeutic use , Cystic Fibrosis Transmembrane Conductance Regulator/genetics , Cystic Fibrosis Transmembrane Conductance Regulator/metabolism , Glycoside Hydrolases/antagonists & inhibitors , Glycosyltransferases/antagonists & inhibitors , Heterocyclic Compounds, 1-Ring/chemical synthesis , Heterocyclic Compounds, 1-Ring/chemistry , Humans , Imino Pyranoses/chemistry , Imino Pyranoses/therapeutic use , Inflammation , Molecular Structure , Mutation , Sequence Deletion , Tartrates/chemistry , Tartrates/therapeutic use
11.
Int J Mol Sci ; 21(19)2020 Oct 07.
Article in English | MEDLINE | ID: mdl-33036426

ABSTRACT

Fabry disease, an X-linked recessive lysosomal disease, results from mutations in the GLA gene encoding lysosomal α-galactosidase A (α-Gal A). Due to these mutations, there is accumulation of globotriaosylceramide (GL-3) in plasma and in a wide range of cells throughout the body. Like other lysosomal enzymes, α-Gal A is synthesized on endoplasmic reticulum (ER) bound polyribosomes, and upon entry into the ER it undergoes glycosylation and folding. It was previously suggested that α-Gal A variants are recognized as misfolded in the ER and undergo ER-associated degradation (ERAD). In the present study, we used Drosophila melanogaster to model misfolding of α-Gal A mutants. We did so by creating transgenic flies expressing mutant α-Gal A variants and assessing development of ER stress, activation of the ER stress response and their relief with a known α-Gal A chaperone, migalastat. Our results showed that the A156V and the A285D α-Gal A mutants underwent ER retention, which led to activation of unfolded protein response (UPR) and ERAD. UPR could be alleviated by migalastat. When expressed in the fly's dopaminergic cells, misfolding of α-Gal A and UPR activation led to death of these cells and to a shorter life span, which could be improved, in a mutation-dependent manner, by migalastat.


Subject(s)
1-Deoxynojirimycin/analogs & derivatives , Lysosomes/enzymology , Protein Folding , alpha-Galactosidase/chemistry , 1-Deoxynojirimycin/chemistry , 1-Deoxynojirimycin/pharmacology , Animals , Animals, Genetically Modified , Brain/metabolism , Brain/pathology , Cell Death , Cell Survival , Dopaminergic Neurons/drug effects , Dopaminergic Neurons/metabolism , Drosophila melanogaster/enzymology , Endoplasmic Reticulum/metabolism , Endoplasmic Reticulum-Associated Degradation , Fabry Disease/genetics , Fabry Disease/metabolism , Fluorescent Antibody Technique , Protein Folding/drug effects , Unfolded Protein Response/drug effects , alpha-Galactosidase/genetics
12.
Molecules ; 25(12)2020 Jun 19.
Article in English | MEDLINE | ID: mdl-32575625

ABSTRACT

Deoxynojirimycin (DNJ) is the archetypal iminosugar, in which the configuration of the hydroxyl groups in the piperidine ring truly mimic those of d-glucopyranose; DNJ and derivatives have beneficial effects as therapeutic agents, such as anti-diabetic and antiviral agents, and pharmacological chaperones for genetic disorders, because they have been shown to inhibit α-glucosidases from various sources. However, attempts to design a better molecule based solely on structural similarity cannot produce selectivity between α-glucosidases that are localized in multiple organs and tissues, because the differences of each sugar-recognition site are very subtle. In this study, we provide the first example of a design strategy for selective lysosomal acid α-glucosidase (GAA) inhibitors focusing on the alkyl chain storage site. Our design of α-1-C-heptyl-1,4-dideoxy-1,4-imino-l-arabinitol (LAB) produced a potent inhibitor of the GAA, with an IC50 value of 0.44 µM. It displayed a remarkable selectivity toward GAA (selectivity index value of 168.2). A molecular dynamic simulation study revealed that the ligand-binding conformation stability gradually improved with increasing length of the α-1-C-alkyl chain. It is noteworthy that α-1-C-heptyl-LAB formed clearly different interactions from DNJ and had favored hydrophobic interactions with Trp481, Phe525, and Met519 at the alkyl chain storage pocket of GAA. Moreover, a molecular docking study revealed that endoplasmic reticulum (ER) α-glucosidase II does not have enough space to accommodate these alkyl chains. Therefore, the design strategy focusing on the shape and acceptability of long alkyl chain at each α-glucosidase may lead to the creation of more selective and practically useful inhibitors.


Subject(s)
Antiviral Agents/chemistry , Drug Design , Glycoside Hydrolase Inhibitors/chemistry , Imino Sugars/chemistry , Molecular Docking Simulation , alpha-Glucosidases/chemistry , 1-Deoxynojirimycin/chemistry , Glucosamine/analogs & derivatives , Glucosamine/chemistry , Humans
13.
Org Biomol Chem ; 17(30): 7204-7214, 2019 08 14.
Article in English | MEDLINE | ID: mdl-31317164

ABSTRACT

A series of analogs of the iminosugars 1-deoxynojirimycin (DNJ) and 1-deoxymannojirimycin (DMJ), in which an extra five or six-membered ring has been fused to the C1-C2 bond have been prepared. The synthetic strategy exploits a key 2-keto-C-allyl iminosugar, easily accessible from gluconolactam, which upon Grignard addition and RCM furnishes a bicyclic scaffold that can be further hydroxylated at the C[double bond, length as m-dash]C bond. This strategy furnished DNJ mimics with the piperidine ring locked in a 1C4 conformation with all substituents in axial orientation when fused to a six-membered ring. Addition of an extra ring to DNJ and DMJ motif proved to strongly modify the glycosidase inhibition profile of the parent iminosugars leading to modest inhibitors. The 2-keto-C-allyl iminosugar scaffold was further used to access N-acetylglycosamine analogs via oxime formation.


Subject(s)
1-Deoxynojirimycin/pharmacology , Glycoside Hydrolase Inhibitors/pharmacology , alpha-Glucosidases/metabolism , beta-Glucosidase/antagonists & inhibitors , 1-Deoxynojirimycin/chemical synthesis , 1-Deoxynojirimycin/chemistry , Animals , Cattle , Coffee/enzymology , Dose-Response Relationship, Drug , Glycoside Hydrolase Inhibitors/chemical synthesis , Glycoside Hydrolase Inhibitors/chemistry , Liver/enzymology , Molecular Conformation , Oryza/enzymology , Structure-Activity Relationship , beta-Glucosidase/metabolism
14.
Bioorg Med Chem ; 27(5): 859-864, 2019 03 01.
Article in English | MEDLINE | ID: mdl-30712980

ABSTRACT

Molecules designed for cell-specific imaging were studied, taking advantage of an enzyme-inhibitor interaction. 1-Deoxynojirimycin (DNJ) can be actively captured by cells which express the surface membrane protein α-glucosidase. New probes composed of DNJ for recognition linked to a fluorophore signal portion were prepared (DNJ-CF31, DNJ-Dans 2 and DNJ-DEAC 3). Docking simulations revealed that the inhibitors acarbose and miglitol and the inhibitor portion of the probes bind at the same position in the pocket of α-glucosidase (human-derived PDB: 3TON). The ability of probes 1-3 to detect the difference between HeLa cells (from human cervical cancer tissue), Neuro-2a cells (from a mouse neuroblastoma C1300 tumor), N1E-115 cells (from a mouse brain neuroblastoma C1300 tumor), A1 cells (from the astrocyte of a newborn mouse brain), and Caco-2 cells (from a human colon carcinoma) was evaluated, and cell-specific fluorescence imaging was possible for conjugate probes 1 and 2. Caco-2 cells treated with probes 1 and 2 showed blue and green fluorescence, respectively, from the cell membrane, and did not stain the Caco-2 cells inside. These results show that DNJ-CF31 and DNJ-Dans 2 recognize an α-glucosidase protein on the surface of Caco-2 cells. Probes 1 and 2 did not stain any part of the other cells. This cell-specific imaging strategy is applicable for a variety of therapeutic agents for many diseases.


Subject(s)
1-Deoxynojirimycin/chemistry , Cell Membrane/metabolism , Fluorescent Dyes/chemistry , Glycoside Hydrolase Inhibitors/chemistry , alpha-Glucosidases/analysis , 1-Deoxynojirimycin/analogs & derivatives , 1-Deoxynojirimycin/metabolism , Acarbose/chemistry , Acarbose/metabolism , Animals , Catalytic Domain , Cell Line, Tumor , Coumarins/chemistry , Dansyl Compounds/chemistry , Humans , Mice , Microscopy, Fluorescence/methods , Molecular Docking Simulation , Protein Binding , alpha-Glucosidases/chemistry , alpha-Glucosidases/metabolism
15.
Bioorg Chem ; 84: 418-433, 2019 03.
Article in English | MEDLINE | ID: mdl-30554081

ABSTRACT

1,5-Dideoxy-1,5-imino-l-fucitol (1-deoxyfuconojirimycin, DFJ) is an iminosugar that inhibits fucosidases. Herein, N-alkyl DFJs have been synthesised and tested against the α-fucosidases of T. maritima (bacterial origin) and B. taurus (bovine origin). The N-alkyl derivatives were inactive against the bacterial fucosidase, while inhibiting the bovine enzyme. Docking of inhibitors to homology models, generated for the bovine and human fucosidases, was carried out. N-Decyl-DFJ was toxic to cancer cell lines and was more potent than the other N-alkyl DFJs studied.


Subject(s)
Enzyme Inhibitors/chemical synthesis , Sugar Alcohols/chemistry , alpha-L-Fucosidase/antagonists & inhibitors , 1-Deoxynojirimycin/analogs & derivatives , 1-Deoxynojirimycin/chemistry , 1-Deoxynojirimycin/metabolism , Bacteria/enzymology , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/metabolism , Binding Sites , Cell Line, Tumor , Cell Survival/drug effects , Enzyme Inhibitors/metabolism , Enzyme Inhibitors/pharmacology , Humans , Immunoglobulin G/metabolism , Immunoglobulin G/pharmacology , Inhibitory Concentration 50 , Melphalan/chemical synthesis , Melphalan/metabolism , Melphalan/pharmacology , Molecular Docking Simulation , Structure-Activity Relationship , Sugar Alcohols/metabolism , alpha-L-Fucosidase/metabolism
16.
Biochem J ; 475(13): 2241-2256, 2018 07 17.
Article in English | MEDLINE | ID: mdl-29907615

ABSTRACT

Biosynthesis of the azasugar 1-deoxynojirimycin (DNJ) critically involves a transamination in the first committed step. Here, we identify the azasugar biosynthetic cluster signature in Paenibacillus polymyxa SC2 (Ppo), homologous to that reported in Bacillus amyloliquefaciens FZB42 (Bam), and report the characterization of the aminotransferase GabT1 (named from Bam). GabT1 from Ppo exhibits a specific activity of 4.9 nmol/min/mg at 30°C (pH 7.5), a somewhat promiscuous amino donor selectivity, and curvilinear steady-state kinetics that do not reflect the predicted ping-pong behavior typical of aminotransferases. Analysis of the first half reaction with l-glutamate in the absence of the acceptor fructose 6-phosphate revealed that it was capable of catalyzing multiple turnovers of glutamate. Kinetic modeling of steady-state initial velocity data was consistent with a novel hybrid branching kinetic mechanism which included dissociation of PMP after the first half reaction to generate the apoenzyme which could bind PLP for another catalytic deamination event. Based on comparative sequence analyses, we identified an uncommon His-Val dyad in the PLP-binding pocket which we hypothesized was responsible for the unusual kinetics. Restoration of the conserved PLP-binding site motif via the mutant H119F restored classic ping-pong kinetic behavior.


Subject(s)
1-Deoxynojirimycin/chemistry , Bacillus amyloliquefaciens/enzymology , Bacterial Proteins/chemistry , Fructosephosphates/chemistry , Glutamic Acid/chemistry , Paenibacillus polymyxa/enzymology , Transaminases/chemistry , 1-Deoxynojirimycin/metabolism , Bacterial Proteins/metabolism , Catalysis , Fructosephosphates/metabolism , Glutamic Acid/metabolism , Transaminases/metabolism
17.
Molecules ; 24(18)2019 Sep 11.
Article in English | MEDLINE | ID: mdl-31514404

ABSTRACT

To obtain α-glucosidase inhibitors with high activity, 19 NB-DNJDs (N-benzyl-deoxynojirimycin derivatives) were designed and synthesized. The results indicated that the 19 NB-DNJDs displayed different inhibitory activities towards α-glucosidase in vitro. Compound 18a (1-(4-hydroxy-3-methoxybenzyl)-2-(hydroxymethyl) piperidine-3,4,5-triol) showed the highest activity, with an IC50 value of 0.207 ± 0.11 mM, followed by 18b (1-(3-bromo-4-hydroxy-5-methoxybenzyl)-2-(hydroxymethyl) piperidine-3,4,5-triol, IC50: 0.276 ± 0.13 mM). Both IC50 values of 18a and 18b were significantly lower than that of acarbose (IC50: 0.353 ± 0.09 mM). According to the structure-activity analysis, substitution of the benzyl and bromine groups on the benzene ring decreased the inhibition activity, while methoxy and hydroxyl group substitution increased the activity, especially with the hydroxyl group substitution. Molecular docking results showed that three hydrogen bonds were formed between compound 18a and amino acids in the active site of α-glucosidase. Additionally, an arene‒arene interaction was also modelled between the phenyl ring of compound 18a and Arg 315. The three hydrogen bonds and the arene‒arene interaction resulted in a low binding energy (-5.8 kcal/mol) and gave 18a a higher inhibition activity. Consequently, compound 18a is a promising candidate as a new α-glucosidase inhibitor for the treatment of type Ⅱ diabetes.


Subject(s)
1-Deoxynojirimycin/chemical synthesis , 1-Deoxynojirimycin/pharmacology , Drug Design , Glycoside Hydrolase Inhibitors/chemical synthesis , Glycoside Hydrolase Inhibitors/pharmacology , 1-Deoxynojirimycin/chemistry , Acarbose/pharmacology , Benzaldehydes/chemical synthesis , Benzaldehydes/chemistry , Catalytic Domain , Glycoside Hydrolase Inhibitors/chemistry , Hydrogen Bonding , Kinetics , Molecular Conformation , Molecular Docking Simulation , alpha-Glucosidases/metabolism
18.
Int J Mol Sci ; 19(6)2018 Jun 07.
Article in English | MEDLINE | ID: mdl-29880742

ABSTRACT

The traditional Chinese drug Bombyx Batryticatus (BB), which is also named the white stiff silkworm, has been widely used in Chinese clinics for thousands of years. It is famous for its antispasmodic and blood circulation-promoting effects. Cardiomyocyte hypertrophy, interstitial cell hyperplasia, and myocardial fibrosis are closely related to the N-glycosylation of key proteins. To examine the alterations of N-glycosylation that occur in diabetic myocardium during the early stage of the disease, and to clarify the therapeutic effect of 1-Deoxynojirimycin (1-DNJ) extracted from BB, we used the db/db (diabetic) mouse model and an approach based on hydrophilic chromatography solid-phase extraction integrated with an liquid Chromatograph Mass Spectrometer (LC-MS) identification strategy to perform a site-specific N-glycosylation analysis of left ventricular cardiomyocyte proteins. Advanced glycation end products (AGEs), hydroxyproline, connective tissue growth factor (CTGF), and other serum biochemical indicators were measured with enzyme-linked immunosorbent assays (ELISA). In addition, the α-1,6-fucosylation of N-glycans was profiled with lens culinaris agglutinin (LCA) lectin blots and fluorescein isothiocyanate (FITC)-labelled lectin affinity histochemistry. The results indicated that 1-DNJ administration obviously downregulated myocardium protein N-glycosylation in db/db mice. The expression levels of serum indicators and fibrosis-related cytokines were reduced significantly by 1-DNJ in a dose-dependent manner. The glycan α-1,6-fucosylation level of the db/db mouse myocardium was elevated, and the intervention effect of 1-DNJ administration on N-glycan α-1,6-fucosylation was significant. To verify this result, the well-known transforming growth factor-ß (TGF-ß)/Smad2/3 pathway was selected, and core α-1,6-fucosylated TGF-ß receptor II (TGFR-ßII) was analysed semi-quantitatively with western blotting. The result supported the conclusions obtained from LCA lectin affinity histochemistry and lectin blot analysis. The expression level of α-1,6-fucosyltransferase (FUT8) mRNA was also detected, and the results showed that 1-DNJ administration did not cause obvious inhibitory effects on FUT8 expression. Therefore, the mechanism of 1-DNJ for relieving diabetic cardiomyopathy (DCM)-associated fibrosis can be concluded as the inhibition of N-acetylglucosamine (N-GlcNAc) formation and the reduction of substrate concentration.


Subject(s)
1-Deoxynojirimycin/pharmacology , Bombyx/chemistry , Diabetic Cardiomyopathies/metabolism , Diabetic Cardiomyopathies/pathology , 1-Deoxynojirimycin/chemistry , Animals , Biomarkers , Diabetic Cardiomyopathies/drug therapy , Disease Models, Animal , Fibrosis , Glycosylation , Mice , Myocardium/metabolism , Myocardium/pathology , Polysaccharides , Proteome
19.
World J Microbiol Biotechnol ; 34(6): 77, 2018 May 23.
Article in English | MEDLINE | ID: mdl-29796897

ABSTRACT

Azasugars, such as 1-deoxynojirymicin (1-DNJ), are associated with diverse pharmaceutical applications, such as antidiabetic, anti-obesity, anti-HIV, and antitumor properties. Different azasugars have been isolated from diverse microbial and plant sources though complicated purification steps, or generated by costly chemical synthesis processes. But the biosynthesis of such potent molecules using Escherichia coli as a heterologous host provides a broader opportunity to access these molecules, particularly by utilizing synthetic biological, metabolic engineering, and process optimization approaches. This work used an integrated approach of synthetic biology, enzyme engineering, and pathway optimization for rational metabolic engineering, leading to the improved production of 1-DNJ. The production of 1-DNJ in recombinant E. coli culture broth was confirmed by enzymatic assays and mass spectrometric analysis. Specifically, the pathway engineering for its key precursor, fructose-6-phosphate, along with optimized media condition, results in the highest production levels. When combined, 1-DNJ production was extended to ~ 273 mg/L, which is the highest titer of production of 1-DNJ reported using E. coli.


Subject(s)
1-Deoxynojirimycin/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Metabolic Engineering , Synthetic Biology , 1-Deoxynojirimycin/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biosynthetic Pathways/genetics , Cloning, Molecular , Culture Media/chemistry , DNA, Bacterial/genetics , Escherichia coli/enzymology , Escherichia coli/growth & development , Fermentation , Fructosephosphates/metabolism , Genes, Bacterial/genetics
20.
Chemistry ; 23(26): 6295-6304, 2017 May 05.
Article in English | MEDLINE | ID: mdl-28240441

ABSTRACT

The vision of multivalency as a strategy limited to achieve affinity enhancements between a protein receptor and its putative sugar ligand (glycotope) has proven too simplistic. On the one hand, binding of a glycotope in a dense glycocalix-like construct to a lectin partner has been shown to be sensitive to the presence of a third sugar entity (heterocluster effect). On the other hand, several carbohydrate processing enzymes (glycosidases and glycosyltransferases) have been found to be also responsive to multivalent presentations of binding partners (multivalent enzyme inhibition), a phenomenon first discovered for iminosugar-type inhibitory species (inhitopes) and recently demonstrated for multivalent carbohydrate constructs. By assessing a series of homo- and heteroclusters combining α-d-glucopyranosyl-related glycotopes and inhitopes, it was shown that multivalency and heteromultivalency govern both kinds of events, allowing for activation, deactivation or enhancement of specific recognition phenomena towards a spectrum of lectin and glycosidase partners in a multimodal manner. This unified scenario originates from the ability of (hetero)multivalent architectures to trigger glycosidase binding modes that are reminiscent of those harnessed by lectins, which should be considered when profiling the biological activity of multivalent architectures.


Subject(s)
Glycoside Hydrolases/metabolism , Lectins/metabolism , 1-Deoxynojirimycin/chemistry , 1-Deoxynojirimycin/metabolism , Binding, Competitive , Concanavalin A/chemistry , Concanavalin A/metabolism , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/metabolism , Glycoside Hydrolases/antagonists & inhibitors , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Kinetics , Lectins/chemistry , Peanut Agglutinin/chemistry , Peanut Agglutinin/metabolism , Protein Binding , beta-Cyclodextrins/chemistry , beta-Cyclodextrins/metabolism
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