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1.
Appl Environ Microbiol ; 86(11)2020 05 19.
Article in English | MEDLINE | ID: mdl-32245756

ABSTRACT

Acidophiles play a dominant role in driving elemental cycling in natural acid mine drainage (AMD) habitats and exhibit important application value in bioleaching and bioremediation. Acidity is an inevitable environmental stress and a key factor that affects the survival of acidophiles in their acidified natural habitats; however, the regulatory strategies applied by acidophilic bacteria to withstand low pH are unclear. We identified the significance of the ferric uptake regulator (Fur) in acidophiles adapting to acidic environments and discovered that Fur is ubiquitous as well as highly conserved in acidophilic bacteria. Mutagenesis of the fur gene of Acidithiobacillus caldus, a prototypical acidophilic sulfur-oxidizing bacterium found in AMD, revealed that Fur is required for the acid resistance of this acidophilic bacterium. Phenotypic characterization, transcriptome sequencing (RNA-seq), mutagenesis, and biochemical assays indicated that the Acidithiobacillus caldus ferric uptake regulator (AcFur) is involved in extreme acid resistance by regulating the expression of several key genes of certain cellular activities, such as iron transport, biofilm formation, sulfur metabolism, chemotaxis, and flagellar biosynthesis. Finally, a Fur-dependent acid resistance regulatory strategy in A. caldus was proposed to illustrate the ecological behavior of acidophilic bacteria under low pH. This study provides new insights into the adaptation strategies of acidophiles to AMD ecosystems and will promote the design and development of engineered biological systems for the environmental adaptation of acidophiles.IMPORTANCE This study advances our understanding of the acid tolerance mechanism of A. caldus, identifies the key fur gene responsible for acid resistance, and elucidates the correlation between fur and acid resistance, thus contributing to an understanding of the ecological behavior of acidophilic bacteria. These findings provide new insights into the acid resistance process in Acidithiobacillus species, thereby promoting the study of the environmental adaptation of acidophilic bacteria and the design of engineered biological systems.


Subject(s)
Acidithiobacillus/physiology , Adaptation, Biological/genetics , Bacterial Proteins/genetics , Ecosystem , Hydrogen-Ion Concentration , Repressor Proteins/genetics , Acidithiobacillus/genetics , Acids , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Ferric Compounds/metabolism , Mining , Repressor Proteins/chemistry , Repressor Proteins/metabolism , Sequence Alignment
2.
J Biol Phys ; 45(2): 193-211, 2019 06.
Article in English | MEDLINE | ID: mdl-31073789

ABSTRACT

To explore engineering platforms towards 'active bacterial baths', we grow and characterize native and commercial strains of Acidithiobacillus ferrooxidans to promote swimming locomotion. Three different energy sources were used, namely elemental sulfur, ferrous sulfate, and pyrite. The characteristics of the culture, such as pH, Eh, and the concentration of cells and ions, are monitored to seek correlations between the oxidation route and the transport mechanism. We found that only elemental sulfur induces swimming mobility in the commercial DSMZ - 24,419 strain, while ferrous sulfate and the sulfide mineral, pyrite, did not activate swimming on any strain. The bacterial mean squared displacement and the mean velocity are measured to provide a quantitative description of the bacterial mobility. We found that, even if the A. ferrooxidans strain is grown in a sulfur-rich environment, it preferentially oxidizes iron when an iron-based material is included in the media. Similar to other species, once the culture pH decreases below 1.2, the active locomotion is inhibited. The engineering control and activation of swimming in bacterial cultures offer fertile grounds towards applications of active suspensions such as energy-efficient bioleaching, mixing, drug delivery, and bio-sensing.


Subject(s)
Acidithiobacillus/physiology , Hydrodynamics , Movement , Acidithiobacillus/growth & development , Acidithiobacillus/metabolism , Culture Techniques , Energy Metabolism , Oxidation-Reduction , Swimming
3.
Appl Environ Microbiol ; 84(7)2018 04 01.
Article in English | MEDLINE | ID: mdl-29374029

ABSTRACT

The type strain of the mineral-oxidizing acidophilic bacterium Acidithiobacillus ferridurans was grown in liquid medium containing elevated concentrations of sodium chloride with hydrogen as electron donor. While it became more tolerant to chloride, after about 1 year, the salt-stressed acidophile was found to have lost its ability to oxidize iron, though not sulfur or hydrogen. Detailed molecular examination revealed that this was due to an insertion sequence, ISAfd1, which belongs to the ISPepr1 subgroup of the IS4 family, having been inserted downstream of the two promoters PI and PII of the rus operon (which codes for the iron oxidation pathway in this acidophile), thereby preventing its transcription. The ability to oxidize iron was regained on protracted incubation of the culture inoculated onto salt-free solid medium containing ferrous iron and incubated under hydrogen. Two revertant strains were obtained. In one, the insertion sequence ISAfd1 had been excised, leaving an 11-bp signature, while in the other an ∼2,500-bp insertion sequence (belonging to the IS66 family) was detected in the downstream inverted repeat of ISAfd1 The transcriptional start site of the rus operon in the second revertant strain was downstream of the two ISs, due to the creation of a new "hybrid" promoter. The loss and subsequent regaining of the ability of A. ferriduransT to reduce ferric iron were concurrent with those observed for ferrous iron oxidation, suggesting that these two traits are closely linked in this acidophile.IMPORTANCE Iron-oxidizing acidophilic bacteria have primary roles in the oxidative dissolution of sulfide minerals, a process that underpins commercial mineral-processing biotechnologies ("biomining"). Most of these prokaryotes have relatively low tolerance to chloride, which limits their activities when only saline or brackish waters are available. The study showed that it was possible to adapt a typical iron-oxidizing acidophile to grow in the presence of salt concentrations similar to those in seawater, but in so doing they lost their ability to oxidize iron, though not sulfur or hydrogen. The bacterium regained its capacity for oxidizing iron when the salt stress was removed but simultaneously reverted to tolerating lower concentrations of salt. These results suggest that the bacteria that have the main roles in biomining operations could survive but become ineffective in cases where saline or brackish waters are used for irrigation.


Subject(s)
Acidithiobacillus/physiology , Genes, Bacterial , Iron/metabolism , Phenotype , Salt Stress/genetics , Transcription, Genetic , Acidithiobacillus/genetics , Operon , Oxidation-Reduction , Salt Tolerance/genetics
4.
Arch Microbiol ; 200(7): 1025-1035, 2018 Sep.
Article in English | MEDLINE | ID: mdl-29637290

ABSTRACT

Bioleaching is a promising process for 350 million tons Jinchuan low-grade pentlandite. But, Jinchuan pentlandite has lots of magnesium and high concentration of Mg2+ is harmful to bioleaching microorganisms. Thus, finding a way to improve the adaption of microorganisms to Mg2+ is a key for bioleaching. In the study, we found that oxidizing activity, bioleaching ability and biofilm formation of A.f were inhibited by Mg2+ stress. In addition, we analyzed mRNA and small RNA (sRNA) of Acidithiobacillus ferrooxidans (A.f) under Mg2+ stress by strand-specific RNA-sequencing (ssRNA-seq). After the bioinformatics process, 2475 coding genes were obtained, and there were 33 differential expression genes (DEGs) in 0.1 M-VS-Con, including 28 down-regulated and 5 up-regulated, whereas 52 DEGs were obtained in 0.5 M-VS-Con, including 28 down-regulated and 24 up-regulated. Gene ontology analysis showed most of DEGs were involved in catalytic activity, metabolic process and single-organism process. Furthermore, we identified 636 sRNA and some differential expression sRNA that may respond to Mg2+ stress. Further analysis of DEGs suggested that Mg2+ stress reduced biofilm formation perhaps through inhibiting Type IV Pili-related gene expression and inhibited bacterial activity perhaps through affecting carbon fixation. The study provided the foundation to understand the mechanisms of Mg2+ resistance in A.f and may be helpful to improve bioleaching ability for pentlandit.


Subject(s)
Acidithiobacillus/genetics , Magnesium/metabolism , RNA, Bacterial/genetics , Acidithiobacillus/physiology , Fimbriae, Bacterial/genetics , Fimbriae, Bacterial/metabolism , Sequence Analysis, RNA , Stress, Physiological , Transcriptome
5.
Eur Phys J E Soft Matter ; 41(2): 22, 2018 Feb 16.
Article in English | MEDLINE | ID: mdl-29464436

ABSTRACT

Pure phospholipids and membrane fragments from bacterial cells living under various conditions were studied against the influence of the surrounding acidity on the internal dynamics. For that we compared mean square displacements extracted from elastic incoherent neutron scattering data, measured both at low and at neutral pH, of the phospholipids 1,2-dimyristoyl-sn-glycero-3-phosphocholine and of samples from neutralophilic and acidophilic micro-organisms (some being hyperthermophilic and others mesophilic). The lipids showed a slight shift in the phase transition temperature of about 4 degrees under pH variation and became slightly more mobile at lower pH. The membrane fragments not used to extreme acidic conditions were significantly more sensitive to variations in the pH values, whereas the acidophilic and -tolerant samples were much less influenced by this parameter. They presented the higher softness at low pH, which was closer to their native condition. Such findings might be a hint for adaptation mechanisms to different acidity conditions.


Subject(s)
Cell Membrane/chemistry , Molecular Dynamics Simulation , Acidithiobacillus/chemistry , Acidithiobacillus/physiology , Elasticity , Escherichia coli/chemistry , Escherichia coli/physiology , Hydrogen-Ion Concentration , Phospholipids/chemistry , Wolinella/chemistry , Wolinella/physiology
6.
Biofouling ; 31(7): 575-86, 2015.
Article in English | MEDLINE | ID: mdl-26343200

ABSTRACT

To obtain a fundamental understanding of the population behaviour of Acidithiobacillus ferrooxidans at chalcopyrite and pyrite surfaces, the early stage attachment behaviour and biofilm formation by this bacterium on chalcopyrite (CuFeS2) and pyrite (FeS2) were studied by optical microscopy, Raman spectroscopy, time-of-flight secondary ion mass spectrometry (ToF-SIMS) and electron backscatter diffraction (EBSD). The results indicate there was no significant difference in selectivity of bacterial attachment between chalcopyrite and pyrite. However, the result of ToF-SIMS analysis suggests that the surface of the pyrite was covered more extensively by biofilm than that of the chalcopyrite, which may indicate more extracellular polymeric substances (EPS) formation by bacterial cells growing on pyrite. EBSD and optical image analysis indicated that selectivity of bacterial attachment to chalcopyrite was not significantly affected by crystal orientation. The results also suggest that the bacterial population in defective areas of chalcopyrite was significantly higher than on the polished surfaces.


Subject(s)
Acidithiobacillus/physiology , Bacterial Adhesion/physiology , Biofilms/growth & development , Copper/chemistry , Iron/chemistry , Sulfides/chemistry , Mass Spectrometry/methods , Microscopy, Electron, Transmission/methods , Minerals , Surface Properties
7.
J Ind Microbiol Biotechnol ; 42(10): 1363-8, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26264929

ABSTRACT

This article presents a model-based evaluation of ferrous iron oxidation in chemostat and biofilm airlift reactors inoculated with a mixed culture of Acidithiobacillus ferrooxidans and Leptospirillum ferrooxidans bacteria. The competition between the two types of bacteria in the chemostat and in the biofilm airlift reactors together with the distribution of both bacteria along the biofilm thickness at different time sections has been studied. The bacterial distribution profiles along the biofilm in the airlift reactor at different time scales show that in the beginning A. ferrooxidans bacteria are dominant, but when the reactor operates for a long time the desirable L. ferrooxidans species outcompete A. ferrooxidans as a result of the low Fe(2+) and high Fe(3+) concentrations. The results obtained from the simulation were compared with the experimental data of continuously operated internal loop airlift biofilm reactor. The model results are in good agreement with the experimental results.


Subject(s)
Bacteria/metabolism , Biofilms , Bioreactors , Ferrous Compounds/metabolism , Iron/metabolism , Acidithiobacillus/metabolism , Acidithiobacillus/physiology , Oxidation-Reduction
8.
J Basic Microbiol ; 54(3): 226-31, 2014 Mar.
Article in English | MEDLINE | ID: mdl-23440740

ABSTRACT

Studies on Acidithiobacillus ferrooxidans accepting electrons from Fe(II) have previously focused on cytochrome c. However, we have discovered that, besides cytochrome c, type IV pili (Tfp) can transfer electrons. Here, we report conduction by Tfp of A. ferrooxidans analyzed with a conducting-probe atomic force microscope (AFM). The results indicate that the Tfp of A. ferrooxidans are highly conductive. The genome sequence of A. ferrooxidans ATCC 23270 contains two genes, pilV and pilW, which code for pilin domain proteins with the conserved amino acids characteristic of Tfp. Multiple alignment analysis of the PilV and PilW (pilin) proteins indicated that pilV is the adhesin gene while pilW codes for the major protein element of Tfp. The likely function of Tfp is to complete the circuit between the cell surface and Fe(II) oxides. These results indicate that Tfp of A. ferrooxidans might serve as biological nanowires transferring electrons from the surface of Fe(II) oxides to the cell surface.


Subject(s)
Acidithiobacillus/physiology , Bacterial Proteins/metabolism , Electrons , Ferrous Compounds/chemistry , Fimbriae, Bacterial/physiology , Amino Acid Sequence , Bacterial Proteins/genetics , Molecular Sequence Data
9.
J Basic Microbiol ; 54(6): 598-606, 2014 Jun.
Article in English | MEDLINE | ID: mdl-23686751

ABSTRACT

Acidithiobacillus ferrooxidans showed the compensate growth and oxidation after re-feeding with sufficient ferrous materials after starvation. Compensatory phenomena were first detected in chemoautotrophic organisms. Starvation stress of Acidithiobacillus ferrooxidans was achieved via culturing in low concentrations of iron. During compensation, growth and ferrous oxidation took place faster than in controls. In addition, some genes related to ferrous oxidation (such as rus) and carbon assimilation (cbbR, csoS3) were expressed in different patterns in the low energy environments. Their expression patterns can account for this increased growth and oxidation. Other groups of genes (cspAB, feoAB, fur) were suppressed in response to starvation stress. The presence of pyrite and joint cold stress can render compensation nearly undetectable. This may be why the compensation phenomena observed under these conditions was not the same as that observed under single starvation stress conditions. Gene expression reflected a possible mechanism of tolerance to starvation in Acidithiobacillus ferrooxidans, which would allow the organism to adapt and survive in ferrous-limited environments.


Subject(s)
Acidithiobacillus/physiology , Iron/metabolism , Stress, Physiological , Acidithiobacillus/growth & development , Acidithiobacillus/metabolism , Acidithiobacillus/radiation effects , Cold-Shock Response , Gene Expression Profiling , Gene Expression Regulation, Bacterial , Metabolic Networks and Pathways , Oxidation-Reduction
10.
Proteomics ; 13(7): 1133-44, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23319327

ABSTRACT

Acidithiobacillus ferrooxidans is a chemolithoautotrophic, mesophilic Gram-negative bacterium able to oxidize ferrous iron, sulfur, and metal sulfides. It forms monolayer biofilms where extracellular polymeric substances are essential for cell attachment and metal sulfide leaching. High-throughput proteomics has been applied to study the early process of biofilm formation on pyrite by At. ferrooxidans ATCC 23270. After 24 h contact with the mineral, planktonic and sessile (biofilm) cell subpopulations were separated and proteins extracted. In total, 1319 proteins were detected in both samples. Sixty-two of these were found to be increased in biofilms. Additionally, 25 proteins were found to be decreased in the biofilm cell subpopulation. Three transcriptional factors were found to be increased or decreased among both cell subpopulations, suggesting their potential involvement in the regulation of these processes. Although no significant differences were observed for the known proteins related to ferrous iron and sulfur oxidation pathways among both cell subpopulations, the results presented here show that the early steps of At. ferrooxidans biofilm formation consist of a set of metabolic adaptations following cell attachment to the mineral surface. Functions such as extracellular polymeric substances biosynthesis seem to be pivotal. This first high-throughput proteomic study may also contribute to the annotation of several unknown At. ferrooxidans proteins found.


Subject(s)
Acidithiobacillus/drug effects , Acidithiobacillus/physiology , Biofilms/drug effects , Biofilms/growth & development , Iron/pharmacology , Proteomics/methods , Sulfides/pharmacology , Acidithiobacillus/cytology , Bacterial Proteins/metabolism , Plankton/drug effects , Plankton/metabolism , Plankton/microbiology , Proteome/metabolism
11.
Appl Environ Microbiol ; 79(21): 6784-94, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23995926

ABSTRACT

Biofiltration of industrial carbon disulfide (CS2)-contaminated waste air streams results in the acidification of biofilters and therefore reduced performance, high water use, and increased costs. To address these issues, we isolated 16 extremely acidophilic CS2-converting Acidithiobacillus thiooxidans strains that tolerated up to 6% (vol/vol) sulfuric acid. The ecophysiological properties of five selected strains (2Bp, Sts 4-3, S1p, G8, and BBW1) were compared. These five strains had pH optima between 1 (2Bp) and 2 (S1p). Their affinities for CS2 ranged between 80 (G8) and 130 (2Bp) µM. Strains S1p, G8, and BBW1 had more hydrophobic cell surfaces and produced less extracellular polymeric substance than did strains 2Bp and Sts 4-3. All five strains converted about 80% of the S added as CS2 to S(0) when CS2 was supplied in excess. The rate of S(0) consumption varied between 7 (Sts 4-3) and 63 (S1p) nmol O2 min(-1) ml culture(-1). Low S(0) consumption rates correlated partly with low levels of cell attachment to externally produced S(0) globules. During chemostat growth, the relative amount of CS2 hydrolase in the cell increased with decreasing growth rates. This resulted in more S(0) accumulation during CS2 overloads at low growth rates. Intermittent interruptions of the CS2 supply affected all five strains. Strains S1p, G8, and BBW1 recovered from 24 h of starvation within 4 h, and strains 2Bp and Sts 4-3 recovered within 24 h after CS2 was resupplied. We recommend the use of mixtures of Acidithiobacillus strains in industrial biofilters.


Subject(s)
Acidithiobacillus/genetics , Acidithiobacillus/physiology , Biodiversity , Carbon Disulfide/metabolism , Industrial Microbiology/methods , Acidithiobacillus/metabolism , Base Sequence , Cloning, Molecular , Cryoelectron Microscopy , Filtration/methods , Hydrogen-Ion Concentration , Hydrolases/metabolism , Molecular Sequence Data , Polymerase Chain Reaction , Sequence Analysis, DNA , Species Specificity
12.
Appl Microbiol Biotechnol ; 97(8): 3729-37, 2013 Apr.
Article in English | MEDLINE | ID: mdl-22752316

ABSTRACT

Biofilm formation plays a pivotal role in bioleaching activities of bacteria in both industrial and natural environments. Here, by visualizing attached bacterial cells on energetic substrates with different microscopy techniques, we obtained the first direct evidence that it is possible to positively modulate biofilm formation of the extremophilic bacterium Acidithiobacillus ferrooxidans on sulfur and pyrite surfaces by using Quorum Sensing molecules of the N-acylhomoserine lactone type (AHLs). Our results revealed that AHL-signaling molecules with a long acyl chain (12 or 14 carbons) increased the adhesion of A. ferrooxidans cells to these substrates. In addition, Card-Fish experiments demonstrated that C14-AHL improved the adhesion of indigenous A. ferrooxidans cells from a mixed bioleaching community to pyrite. Finally, we demonstrated that this improvement of cell adhesion is correlated with an increased production of extracellular polymeric substances. Our results open up a promising means to develop new strategies for the improvement of bioleaching efficiency and metal recovery, which could also be used to control environmental damage caused by acid mine/rock drainage.


Subject(s)
Acidithiobacillus/physiology , Acyl-Butyrolactones/metabolism , Biofilms/growth & development , Iron/metabolism , Metals/metabolism , Quorum Sensing/drug effects , Signal Transduction/drug effects , Sulfides/metabolism , Acidithiobacillus/drug effects , Bacterial Adhesion , Polymers/metabolism , Sulfur/metabolism
13.
Antonie Van Leeuwenhoek ; 103(4): 905-19, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23291738

ABSTRACT

In contrast to iron-oxidizing Acidithiobacillus ferrooxidans, A. ferrooxidans from a stationary phase elemental sulfur-oxidizing culture exhibited a lag phase in pyrite oxidation, which is similar to its behaviour during ferrous iron oxidation. The ability of elemental sulfur-oxidizing A. ferrooxidans to immediately oxidize ferrous iron or pyrite without a lag phase was only observed in bacteria obtained from growing cultures with elemental sulfur. However, these cultures that shifted to ferrous iron oxidation showed a low rate of ferrous iron oxidation while no growth was observed. Two-dimensional gel electrophoresis was used for a quantitative proteomic analysis of the adaptation process when bacteria were switched from elemental sulfur to ferrous iron. A comparison of total cell lysates revealed 39 proteins whose increase or decrease in abundance was related to this phenotypic switching. However, only a few proteins were closely related to iron and sulfur metabolism. Reverse-transcription quantitative PCR was used to further characterize the bacterial adaptation process. The expression profiles of selected genes primarily involved in the ferrous iron oxidation indicated that phenotypic switching is a complex process that includes the activation of genes encoding a membrane protein, maturation proteins, electron transport proteins and their regulators.


Subject(s)
Acidithiobacillus/metabolism , Bacterial Proteins/biosynthesis , Ferrous Compounds/metabolism , Gene Expression Regulation , Metabolic Networks and Pathways/genetics , Acidithiobacillus/growth & development , Acidithiobacillus/physiology , Adaptation, Physiological , Electrophoresis, Gel, Two-Dimensional , Gene Expression Profiling , Iron/metabolism , Oxidation-Reduction , Proteome/analysis , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction , Sulfides/metabolism , Sulfur/metabolism , Transcription, Genetic
14.
Can J Microbiol ; 58(5): 628-36, 2012 May.
Article in English | MEDLINE | ID: mdl-22524627

ABSTRACT

Temperature plays an important role in the heap bioleaching. The maldistribution of ventilation in the heap leads to local hyperthermia, which does exert a tremendous stress on bioleaching microbes. In this study, the genome-wide expression profiles of Acidithiobacillus ferrooxidans at 40 °C were detected using the microarray. The results showed that some classic proteases like Lon and small heat-shock proteins were not induced, and heat-inducible membrane proteins were suggested to be under the control of σ(E). Moreover, expression changes of energy metabolism are noteworthy, which is different from that in heterotrophic bacteria upon heat stress. The induced enzymes catalyzed the central carbon metabolism pathway that might mainly provide precursors of amino acids for protein synthesis. These results will deepen the understanding of the mechanisms of heat-shock response on autotrophic bacteria.


Subject(s)
Acidithiobacillus/physiology , Genome, Bacterial , Heat-Shock Proteins, Small/metabolism , Heat-Shock Response , Acidithiobacillus/genetics , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Carbon/metabolism , Heat-Shock Proteins, Small/genetics , Oligonucleotide Array Sequence Analysis , Promoter Regions, Genetic , RNA Polymerase Sigma 54/metabolism , Sigma Factor/metabolism , Temperature
15.
Lett Appl Microbiol ; 54(2): 133-9, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22098310

ABSTRACT

AIMS: The primary goal of this study was to characterize the existence of a functional c-di-GMP pathway in the bioleaching bacterium Acidithiobacillus ferrooxidans. METHODS AND RESULTS: A bioinformatic search revealed that the genome sequence of At. ferrooxidans ATCC 23270 codes for several proteins involved in the c-di-GMP pathway, including diguanylate cyclases (DGC), phosphodiesterases and PilZ effector proteins. Overexpression in Escherichia coli demonstrated that four At. ferrooxidans genes code for proteins containing GGDEF/EAL domains with functional DGC activity. MS/MS analysis allowed the identification of c-di-GMP in nucleotide preparations obtained from At. ferrooxidans cells. In addition, c-di-GMP levels in cells grown on the surface of solid energetic substrates such as sulfur prills or pyrite were higher than those measured in ferrous iron planktonic cells. CONCLUSIONS: At. ferrooxidans possesses a functional c-di-GMP pathway that could play a key role in At. ferrooxidans biofilm formation during bioleaching processes. SIGNIFICANCE AND IMPACT OF THE STUDY: This is the first global study about the c-di-GMP pathway in an acidophilic bacterium of great interest for the biomining industry. It opens a new way to explore the regulation of biofilm formation by biomining micro-organisms during the bioleaching process.


Subject(s)
Acidithiobacillus/physiology , Cyclic GMP/analogs & derivatives , Minerals/metabolism , Signal Transduction , Acidithiobacillus/genetics , Acidithiobacillus/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biofilms , Cyclic GMP/chemistry , Cyclic GMP/genetics , Cyclic GMP/metabolism , Escherichia coli/genetics , Intracellular Space/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Tandem Mass Spectrometry
16.
World J Microbiol Biotechnol ; 28(3): 1045-55, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22805826

ABSTRACT

Acidithiobacillus ferrooxidans (A. ferrooxidans) ATCC 23270 is a model bacteria for bioleaching research. Because of the use of extractant in metal extraction industry, A. ferrooxidans needs to cope with the water-organic two-phase system. To get insight into the molecular response of A. ferrooxidans to organic solvent, global gene expression pattern was examined in A. ferrooxidans ATCC 23270 cells subjected to Lix984n (an organic extractant) using the method of whole-genome DNA microarray. The data suggested that the global response of A. ferrooxidans to Lix984n stress was characterized by the up-regulation of genes involved in pentose phosphate pathway, fatty acid and glutamate biosynthesis. In further study, compared to heterotrophic bacteria in dealing with short-time stress, A. ferrooxidans has a special strategy of continuously enhancing the expression of genes encoding proteins involved in electron transport, such as petI, petII, cyo and cyd. Besides, acrAB-tolC operon encoding organic solvent efflux pump and its positive regulator gene ostR were addressed.


Subject(s)
Acidithiobacillus/drug effects , Gene Expression Regulation, Bacterial , Organic Chemicals/toxicity , Stress, Physiological , Transcriptome , Acidithiobacillus/genetics , Acidithiobacillus/physiology , Electron Transport , Metabolic Networks and Pathways/genetics , Microarray Analysis , Oligonucleotide Array Sequence Analysis , Solvents/toxicity
17.
Waste Manag Res ; 30(3): 295-301, 2012 Mar.
Article in English | MEDLINE | ID: mdl-21946045

ABSTRACT

Metallurgical wastes--oxygen converter sludge, dust from cast iron production, lead matte, and slag from recycling of used lead batteries--were treated with Acidithiobacillus bacteria. Bacterial activity and adaptability on waste and some waste mixtures were investigated. Acidithiobacillus bacteria may easily attack oxygen converter sludge, lead matte and slag and affect the mobility of metals. Cast iron dust is not a suitable substrate for applied bacteria due to the absence of reduced sulfur and reduced iron in its mineralogical composition. Nevertheless, the pure culture was able to adapt to the mixture of this waste with slag. Disposal of these metallurgical wastes deserves special attention due to potential attack by microorganisms and consequent pH changes. According to subsequent release of hazardous substances to the environment, this phenomenon can lead to evident environmental risks.


Subject(s)
Acidithiobacillus/physiology , Environmental Pollutants/analysis , Environmental Pollutants/toxicity , Industrial Waste/analysis , Adaptation, Physiological , Environmental Pollutants/chemistry , Metallurgy , Refuse Disposal , Species Specificity , Spectrophotometry, Atomic , Waste Disposal, Fluid
18.
Antonie Van Leeuwenhoek ; 100(2): 259-77, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21604047

ABSTRACT

Cold tolerant strains of Acidithiobacillus ferrooxidans play a role in metal leaching and acid mine drainage (AMD) production in northern latitude/boreal mining environments. In this study we used a proteomics and bioinformatics approach to decipher the proteome changes related to sustained growth at low temperatures to increase our understanding of cold adaptation mechanisms in A. ferrooxidans strains. Changes in protein abundance in response to low temperatures (5 and 15°C) were monitored and protein analyses of a psychrotrophic strain (D6) versus a mesophilic strain (F1) showed that both strains increased levels of 11 stress-related and metabolic proteins including survival protein SurA, trigger factor Tig, and AhpC-Tsa antioxidant proteins. However, a unique set of changes in the proteome of psychrotrophic strain D6 were observed. In particular, the importance of protein fate, membrane transport and structure for psychrotrophic growth were evident with increases in numerous chaperone and transport proteins including GroEL, SecB, ABC transporters and a capsule polysaccharide export protein. We also observed that low temperature iron oxidation coincides with a relative increase in the key iron metabolism protein rusticyanin, which was more highly expressed in strain D6 than in strain F1 at colder growth temperatures. We demonstrate that the psychrotrophic strain uses a global stress response and cold-active metabolism which permit growth of A. ferrooxidans in the extreme AMD environment in colder climates.


Subject(s)
Acidithiobacillus/physiology , Adaptation, Physiological , Bacterial Proteins/metabolism , Cold Temperature , Proteome/metabolism , Acidithiobacillus/genetics , Acidithiobacillus/growth & development , Azurin/metabolism , Carbon/metabolism , Computational Biology , Electrophoresis, Gel, Two-Dimensional , Iron/metabolism , Membrane Transport Proteins/metabolism , Molecular Chaperones/metabolism , Oxidation-Reduction , Oxidative Stress , Phylogeny , Protein Folding , Protein Isoforms/metabolism
19.
Extremophiles ; 14(1): 9-19, 2010 Jan.
Article in English | MEDLINE | ID: mdl-19787416

ABSTRACT

Phenotypic and genotypic analysis was carried out on four iron- and sulfur-oxidizing acidophilic bacteria (the "NO-37 group") isolated from different parts of the world. 16S rRNA phylogeny showed that they are highly related to each other, but are less related to the type strain of Acidithiobacillus ferrooxidans. The NO-37 group isolates are obligate chemolithoautotrophs, facultative anaerobes, diazotrophic, and psychrotolerant. They are less tolerant of extremely low pH, and in contrast to At. ferrooxidans (T), all of the NO-37 group isolates are motile. The GC contents of genomic DNA of the NO-37 group isolates were around 56 mol% and the DNA-DNA hybridization value between genomic DNA of isolate NO-37 and At. ferrooxidans (T) was 37%. It also appears that the bacteria of the NO-37 group have a different biochemical mechanism for oxidizing ferrous iron than At. ferrooxidans (T); the gene coding for the archetypal rusticyanin (RusA) was not detected in any of the NO-37 group isolates, rather a gene coding for a homologous protein (RusB) was amplified from three of the four novel isolates. Isolates of the NO-37 group clearly belong to a species that is different to those already recognized in the genus Acidithiobacillus, for which the name Acidithiobacillus ferrivorans is proposed.


Subject(s)
Acidithiobacillus/physiology , Base Composition/physiology , Iron/metabolism , Phylogeny , Sulfur/metabolism , Anaerobiosis/physiology , Azurin/genetics , Azurin/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , DNA, Bacterial/genetics , Hydrogen-Ion Concentration , Oxidation-Reduction , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Species Specificity
20.
Curr Microbiol ; 60(1): 17-24, 2010 Jan.
Article in English | MEDLINE | ID: mdl-19806397

ABSTRACT

We used conventional methods to investigate the mechanism by which Acidithiobacillus ferrooxidans colonizes a solid surface by assessing pili-mediated sliding, twitching motility, and adherence. A. ferrooxidans slided to form circular oxidized zones around each colony. This suggested that slide motility occurs through pili or flagella, though A. ferrooxidans strains ATCC 19859 and ATCC 23270 lack flagella. The results of reverse transcription-PCR demonstrated that the putative major pili gene of A. ferrooxidans strains ATCC 19859, ATCC 23270, and BY3 genes were transcribed. Culture of A. ferrooxidans between silicone gel and glass led to the production of type IV pili and the formation of rough twitching motility zones. When the bacteria were grown on lean ore cubes, pyrite was colonized readily by A. ferrooxidans and there is a correlation between pilus expression and strong attachment. However, non-pili bacteria attached minimally to the mineral surface. The results show a correlation between these functions and pilus expression.


Subject(s)
Acidithiobacillus/physiology , Bacterial Adhesion/physiology , Fimbriae, Bacterial/metabolism , Flagella/metabolism , Acidithiobacillus/ultrastructure , Fimbriae Proteins/genetics , Fimbriae Proteins/metabolism , Fimbriae, Bacterial/ultrastructure , Flagella/ultrastructure , Gene Expression Regulation, Bacterial
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