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1.
Biotechnol Lett ; 42(11): 2345-2355, 2020 Nov.
Article in English | MEDLINE | ID: mdl-32623532

ABSTRACT

OBJECTIVE: To obtain novel glucoamylase from Daqu microbe. RESULTS: A dominant strain known as LZ2 with high activity of hydrolyzing starch was isolated from Luzhou Daqu, a Chinese traditional fermentation starter. The LZ2 was identified as Aspergillus oryzae by 18S rDNA sequence analysis. Glucoamylase from LZ2, named as GA-LZ2, was purified to homogeneity and showed a single band with expected molecular mass of 60 kD. The GA-LZ2 effectively degraded amylose, rice starch and wheat starch. Optimal temperature and pH value of enzyme were 60 °C and pH 4.0 respectively. The GA-LZ2 displayed significant thermal stability and pH stability at moderate temperature and low pH. Intriguingly, the thermostability was enhanced in the presence of starch. In addition, GA-LZ2 exhibited insensitivity to glucose, independence of metal ions and tolerance to organic solvents. The GA-LZ2 retained complete activity in the presence of 100 mM glucose and 5% ethanol and methanol. CONCLUSION: Glucoamylase GA-LZ2 displayed broad substrate specificity, strong stability and tolerance, suggesting that GA-LZ2 carry potential for industrial application in bioethanol production.


Subject(s)
Aspergillus oryzae/classification , Glucan 1,4-alpha-Glucosidase/isolation & purification , RNA, Ribosomal, 18S/genetics , Sequence Analysis, DNA/methods , Amylose/chemistry , Aspergillus oryzae/enzymology , Aspergillus oryzae/genetics , Aspergillus oryzae/isolation & purification , DNA, Fungal/genetics , DNA, Ribosomal/genetics , Enzyme Stability , Fermented Foods , Fungal Proteins/isolation & purification , Fungal Proteins/metabolism , Glucan 1,4-alpha-Glucosidase/chemistry , Glucan 1,4-alpha-Glucosidase/metabolism , Hot Temperature , Hydrogen-Ion Concentration , Phylogeny
2.
Mycoses ; 62(12): 1182-1188, 2019 Dec.
Article in English | MEDLINE | ID: mdl-31556203

ABSTRACT

BACKGROUND: Aspergillus flavus is a major cause of severe non-invasive fungal infections in the Middle Eastern countries. However, it is difficult to distinguish A flavus from A oryzae. OBJECTIVES: To assess the potential of matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF MS) in discriminating between A flavus and A oryzae and compare it with ß-tubulin gene sequencing. METHODS: We used the Bruker Daltonik MALDI-TOF MS system to analyse 200 clinical and environmental A flavus isolates and one A pseudonomius and one A alliaceus (Aspergillus section Flavi) isolate a priori identified as such by sequencing of the ß-tubulin gene. RESULTS: All 200 A flavus isolates were identified at the genus level and 176 (88%) at the species levels by MALDI-TOF MS based on the spectral log-scores (≥2.0 and 1.7-1.99, respectively); among them, only 18 (10.2%) were confirmed as A flavus, whereas 35 (19.9%) were identified as A oryzae and 123 (69.9%) as A flavus/A oryzae. Aspergillus pseudonomius and A alliaceus were misidentified as A flavus and A parasiticus with log-score values of 1.39 and 1.09, respectively. CONCLUSIONS: The results indicate that the commercially available Bruker Daltonik MALDI-TOF MS score database cannot separate A flavus and A oryzae species. We also showed that establishment of an in-house library is a useful tool to discriminate closely related Aspergillus species, including A flavus and A oryzae.


Subject(s)
Aspergillus flavus/classification , Aspergillus oryzae/classification , Environmental Microbiology , Aspergillosis/microbiology , Dust , Humans , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Tubulin/genetics
3.
Appl Microbiol Biotechnol ; 100(22): 9773-9786, 2016 Nov.
Article in English | MEDLINE | ID: mdl-27678114

ABSTRACT

A novel filamentous fungus M-4 strain was isolated from soy sauce koji and identified as Aspergillus oryzae (Collection number: CGMCC 11645) on the basis of morphological characteristics and internal transcribed spacer sequence. M-4 could degrade 80.62 % of 3-phenoxybenzoic acid (3-PBA; 100 mg L-1) within 5 days. 3-PBA degradation occurred in accordance with first-order kinetics. The degradation metabolites of 3-PBA were identified through high-performance liquid chromatography-mass spectrometry (HPLC-MS). Relevant enzymatic activities and substrate utilization were also investigated, which indicated that M-4 could effectively degrade the intermediates of 3-PBA. Base on analysis of these metabolites, a novel biochemical pathway for the degradation of 3-PBA was proposed. There exists a mutual transformation between 3-phenoxy-benzyl alcohol and 3-PBA, which was firstly reported about the degradation of 3-PBA and may be attributed to self-protection transformation of M-4; subsequently, 3-PBA was gradually transformed into phenol, 3-hydroxy-5-phenoxy benzoic acid, protocatechuic acid and gallic acid. The safety of M-4 was evaluated via an acute toxicity test in vivo. The biodegradation ability of M-4 without toxic effects reveals that this fungus may be likely to be used for eliminating 3-PBA from contaminated environment or fermented foods.


Subject(s)
Aspergillus oryzae/metabolism , Benzoates/metabolism , Fungi/metabolism , Aspergillus oryzae/classification , Aspergillus oryzae/genetics , Aspergillus oryzae/isolation & purification , Biotransformation , Chromatography, Liquid , Cluster Analysis , DNA, Fungal/chemistry , DNA, Fungal/genetics , DNA, Ribosomal Spacer/chemistry , DNA, Ribosomal Spacer/genetics , Fungi/classification , Fungi/genetics , Fungi/isolation & purification , Mass Spectrometry , Metabolic Networks and Pathways , Phylogeny , Sequence Analysis, DNA , Soy Foods/microbiology
4.
J Ind Microbiol Biotechnol ; 43(10): 1387-95, 2016 10.
Article in English | MEDLINE | ID: mdl-27541157

ABSTRACT

In this study, four selected commercial strains of Aspergillus oryzae were collected from soy sauce koji. These A. oryzae strains designated as NSK, NSZ, NSJ and NST shared similar morphological characteristics with the reference strain (A. oryzae FRR 1675) which confirmed them as A. oryzae species. They were further evaluated for their ability to produce γ-aminobutyric acid (GABA) by cultivating the spore suspension in a broth medium containing 0.4 % (w/v) of glutamic acid as a substrate for GABA production. The results showed that these strains were capable of producing GABA; however, the concentrations differed significantly (P < 0.05) among themselves. Based on the A. oryzae strains, highest GABA concentration was obtained from NSK (194 mg/L) followed by NSZ (63 mg/L), NSJ (51.53 mg/L) and NST (31.66 mg/L). Therefore, A. oryzae NSK was characterized and the sequence was found to be similar to A. oryzae and A. flavus with 99 % similarity. The evolutionary distance (K nuc) between sequences of identical fungal species was calculated and a phylogenetic tree prepared from the K nuc data showed that the isolate belonged to the A. oryzae species. This finding may allow the development of GABA-rich ingredients using A. oryzae NSK as a starter culture for soy sauce production.


Subject(s)
Aspergillus oryzae/metabolism , Soy Foods , gamma-Aminobutyric Acid/biosynthesis , Aspergillus oryzae/classification , Fermentation , Glutamic Acid/metabolism , Phylogeny
5.
Biotechnol Lett ; 36(10): 2053-8, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25048221

ABSTRACT

Aspergillus oryzae is used to produce traditional fermented foods and beverages. A. oryzae 3.042 produces a neutral protease and an alkaline protease but rarely an acid protease, which is unfavourable to soy-sauce fermentation. A. oryzae 100-8 was obtained by N(+) ion implantation mutagenesis of A. oryzae 3.042, and the protease secretions of these two strains are different. Sequencing the genome of A. oryzae 100-8 and comparing it to the genomes of A. oryzae 100-8 and 3.042 revealed some differences, such as single nucleotide polymorphisms, nucleotide deletion or insertion. Some of these differences may reflect the ability of A. oryzae to secrete proteases. Transcriptional sequencing and analysis of the two strains during the same growth processes provided further insights into the genes and pathways involved in protease secretion.


Subject(s)
Aspergillus oryzae/classification , Aspergillus oryzae/genetics , Fungal Proteins/genetics , Industrial Microbiology , Gene Expression Regulation, Fungal , Genetic Variation , Genome, Fungal , Peptide Hydrolases/genetics , Peptide Hydrolases/metabolism , Sequence Analysis, DNA , Transcriptome
6.
J Ind Microbiol Biotechnol ; 40(8): 891-9, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23652971

ABSTRACT

Among three hundred isolates of filamentous fungi, Aspergillus oryzae SBS50 secreted higher phytase activity at pH 5.0, 35 °C and 200 rpm after 96 h of fermentation. Starch and beef extract supported the highest phytase production than other carbon and nitrogen sources. A nine-fold improvement in phytase production was achieved due to optimization. Supplementation of the medium with inorganic phosphate repressed the enzyme synthesis. Among surfactants tested, Tween 80 increased fungal growth and phytase production, which further resulted in 5.4-fold enhancement in phytase production. The phytase activity was not much affected by proteases treatment. The enzyme resulted in the efficient hydrolysis of insoluble phytate complexes (metal- and protein-phytates) in a time dependent manner. Furthermore, the hydrolysis of insoluble phytates was also supported by scanning electron microscopy. The enzyme, being resistant to trypsin and pepsin, and able to hydrolyze insoluble phytates, can find an application in the animal food/feed industry for improving nutritional quality and also in combating environmental phosphorus pollution and plant growth promotion.


Subject(s)
6-Phytase/biosynthesis , Aspergillus oryzae/enzymology , Phytic Acid/metabolism , Aspergillus oryzae/classification , Aspergillus oryzae/drug effects , Carbon/metabolism , Fermentation , Hydrolysis , Microscopy, Electron, Scanning , Nitrogen/metabolism , Peptide Hydrolases/metabolism , Phosphates/metabolism , Surface-Active Agents/pharmacology
7.
Mol Genet Genomics ; 287(2): 177-87, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22207035

ABSTRACT

Our goal in this work was to develop a method to minimize the chromosomes of Aspergillus oryzae, to arrive at a deeper understanding of essential gene functions that will help create more efficient industrially useful strains. In a previous study, we successfully constructed a highly reduced chromosome 7 using multiple large-scale chromosomal deletions (Jin et al. in Mol Genet Genomics 283:1-12, 2010). Here, we have created a further reduced chromosome A. oryzae mutant harboring a reduced chromosome 7 and a reduced chromosome 8 both of which contain a large number of non-syntenic blocks. These are the smallest A. oryzae chromosomes that have been reported. Protoplast fusion between the two distinct chromosome-reduced mutants produced a vigorous and stable fusant which was isolated. PCR and flow cytometry confirmed that two kinds of nuclei, derived from the parent strains, existed in this fusant and that the chromosome DNA per nucleus was doubled, suggesting that the fusant was a heterozygous diploid strain. By treating the cell with 1 µg/ml benomyl, cell nuclei haploidization was induced in the stable diploid strain. Array comparative genomic hybridization and pulsed-field gel electrophoresis confirmed that the reduced chromosomes 7 and 8 co-existed in the haploid fusant and that no other chromosomal modifications had occurred. This method provides a useful tool for chromosome engineering in A. oryzae to construct an industry-useful strain.


Subject(s)
Aspergillus oryzae/genetics , Chromosome Deletion , Chromosomes, Fungal/genetics , Protoplasts/metabolism , Aspergillus oryzae/classification , Aspergillus oryzae/drug effects , Benomyl/pharmacology , Cell Fusion , Cell Nucleus/genetics , Comparative Genomic Hybridization , DNA, Fungal/genetics , Diploidy , Electrophoresis, Gel, Pulsed-Field , Flow Cytometry , Fungicides, Industrial/pharmacology , Genotype , Haploidy , Mutation , Phenotype , Protoplasts/cytology
8.
Gene ; 793: 145745, 2021 Aug 15.
Article in English | MEDLINE | ID: mdl-34077774

ABSTRACT

Microbial lipid production of oleaginous strains involves in a complex cellular metabolism controlling lipid biosynthesis, accumulation and degradation. Particular storage lipid, triacylglycerol (TAG), contributes to dynamic traits of intracellular lipids and cell growth. To explore a basis of TAG degradation in the oleaginous strain of Aspergillus oryzae, the functional role of two intracellular triacylglycerol lipases, AoTgla and AoTglb, were investigated by targeted gene disruption using CRISPR/Cas9 system. Comparative lipid profiling of different cultivation stages between the control, single and double disruptant strains (ΔAotgla, ΔAotglb and ΔAotglaΔAotglb strains) showed that the inactivation of either AoTgla or AoTglb led to the increase of total lipid contents, particularly in the TAG fraction. Moreover, the prolonged lipid-accumulating stage of all disruptant strains was obtained as indicated by a reduction in specific rate of lipid turnover, in which a holding capacity in maximal lipid and TAG levels was achieved. The involvement of AoTgls in spore production of A. oryzae was also discovered. In addition to the significance in lipid physiology of the oleaginous fungi, this study provides an impact on industrial practice by overcoming the limitation in short lipid-accumulating stage of the fungal strain, which facilitate the cell harvesting step at the maximum lipid production yield.


Subject(s)
Aspergillus oryzae/enzymology , Fatty Acids/biosynthesis , Fungal Proteins/genetics , Lipase/genetics , Spores, Fungal/enzymology , Triglycerides/biosynthesis , Aspergillus oryzae/classification , Aspergillus oryzae/genetics , CRISPR-Cas Systems , Fatty Acids/genetics , Fungal Proteins/metabolism , Gene Deletion , Gene Expression Regulation, Fungal , Humans , Industrial Microbiology , Isoenzymes/genetics , Isoenzymes/metabolism , Kinetics , Lipase/metabolism , Lipid Metabolism/genetics , Mycelium/enzymology , Mycelium/genetics , Phylogeny , Plasmids/chemistry , Plasmids/metabolism , Saccharomyces cerevisiae/classification , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Spores, Fungal/genetics , Triglycerides/genetics
9.
Eukaryot Cell ; 8(3): 296-305, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19136573

ABSTRACT

The Woronin body, a unique organelle found in the Pezizomycotina, plugs the septal pore upon hyphal damage to prevent excessive cytoplasmic bleeding. Although it was previously shown that the Woronin body buds out from the peroxisome, the relationship between peroxisomal proliferation/division and Woronin body differentiation has not been extensively investigated. In this report, we examined whether Pex11 required for peroxisomal proliferation participates in Woronin body formation in Aspergillus oryzae. A. oryzae contained two orthologous PEX11 genes that were designated Aopex11-1 and Aopex11-2. Deletion of Aopex11 genes revealed that only the DeltaAopex11-1 strain showed reduced growth and enlarged peroxisomes in the presence of oleic acid as a sole carbon source, indicating a defect in peroxisomal function and proliferation. Disruption of Aopex11-1 gene impaired the Woronin body function, leading to excessive loss of the cytosol upon hyphal injury. Dual localization analysis of the peroxisome and Woronin body protein AoHex1 demonstrated that Woronin bodies fail to fully differentiate from peroxisomes in the DeltaAopex11-1 strain. Furthermore, distribution of AoHex1 was found to be peripheral in the enlarged peroxisome or junctional in dumbbell-shaped peroxisomes. Electron microscopy of the DeltaAopex11-1 strain revealed the presence of Woronin bodies that remained associated with organelles resembling peroxisomes, which was supported from the sucrose gradient centrifugation confirming that the Woronin body protein AoHex1 overlapped with the density-shifted peroxisome in the DeltaAopex11-1 strain. In conclusion, the present study describes the role of Pex11 in Woronin body differentiation for the first time.


Subject(s)
Aspergillus oryzae/genetics , Fungal Proteins/genetics , Gene Silencing , Organelles/genetics , Peroxisomes/genetics , Aspergillus oryzae/classification , Aspergillus oryzae/metabolism , Aspergillus oryzae/ultrastructure , Fungal Proteins/metabolism , Organelles/metabolism , Organelles/ultrastructure , Peroxisomes/metabolism , Peroxisomes/ultrastructure , Phylogeny
10.
Nat Commun ; 11(1): 1106, 2020 02 27.
Article in English | MEDLINE | ID: mdl-32107379

ABSTRACT

Section Flavi encompasses both harmful and beneficial Aspergillus species, such as Aspergillus oryzae, used in food fermentation and enzyme production, and Aspergillus flavus, food spoiler and mycotoxin producer. Here, we sequence 19 genomes spanning section Flavi and compare 31 fungal genomes including 23 Flavi species. We reassess their phylogenetic relationships and show that the closest relative of A. oryzae is not A. flavus, but A. minisclerotigenes or A. aflatoxiformans and identify high genome diversity, especially in sub-telomeric regions. We predict abundant CAZymes (598 per species) and prolific secondary metabolite gene clusters (73 per species) in section Flavi. However, the observed phenotypes (growth characteristics, polysaccharide degradation) do not necessarily correlate with inferences made from the predicted CAZyme content. Our work, including genomic analyses, phenotypic assays, and identification of secondary metabolites, highlights the genetic and metabolic diversity within section Flavi.


Subject(s)
Aspergillus flavus/genetics , Aspergillus oryzae/genetics , Genome, Fungal/genetics , Genomics , Aspergillus flavus/classification , Aspergillus flavus/enzymology , Aspergillus oryzae/classification , Aspergillus oryzae/enzymology , Bioreactors , Carbohydrate Metabolism/genetics , Crops, Agricultural/microbiology , DNA, Fungal/genetics , Fermentation , Fermented Foods , Fungal Proteins/genetics , Fungal Proteins/metabolism , Metabolic Networks and Pathways/genetics , Multigene Family , Phenotype , Phylogeny , Plant Diseases/prevention & control , Secondary Metabolism/genetics
11.
Fungal Biol ; 124(8): 708-713, 2020 08.
Article in English | MEDLINE | ID: mdl-32690252

ABSTRACT

Aspergillus oryzae KB produces two ß-fructofuranosidases (F1 and F2). F1 has high transfructosylation activity (Ut) to produce fructooligosaccharides. F2 has high hydrolysis activity (Uh), releasing glucose and fructose. It is desirable to selectively produce F1, which can be used for production of fructooligosaccharides. Here, the relationship between filamentous pellet size and selective production of F1 in liquid culture was investigated. Our finding revealed that: (i) The mean particle size of pellets (5.88 ± 1.36 mm) was larger, and the ratio of Ut to Uh was improved (Ut/Uh = 5.0) in 10% sucrose medium compared with 1% sucrose medium (pellet size = 2.60 ± 0.37 mm; Ut/Uh = 0.96). (ii) The final culture pH of the 1% sucrose medium was 8.7; on controlling the pH of 1% sucrose medium at 5.0, increased pellet size (9.69 ± 2.01 mm) and Ut/Uh (7.8) were observed. (iii) When 3% glycerin was used as carbon source, the pellet size decreased to 1.09 ± 0.33 mm and Ut/Uh was 0.57. (iv) In medium containing 1% sucrose, the pellet size was dependent on the number of spores used in the culture inoculum, but, in these experiments, Ut/Uh was almost constant (1.05 ± 0.08). Collectively, the data show that the value of Ut/Uh is proportional to the pellet size when liquid culture of A. oryzae strain KB is performed in some conditions (such as in the presence of high sucrose concentration, low pH, or added Tween surfactant), but in other conditions Ut/Uh is independent of pellet size.


Subject(s)
Aspergillus oryzae/physiology , Sucrose/metabolism , beta-Fructofuranosidase/biosynthesis , Aspergillus oryzae/classification , Aspergillus oryzae/enzymology , Chromatography, High Pressure Liquid , Culture Media/chemistry , Fructose/metabolism , Glucose/metabolism , Hydrogen-Ion Concentration , Hydrolysis , Real-Time Polymerase Chain Reaction , Surface-Active Agents/administration & dosage , beta-Fructofuranosidase/metabolism
12.
Vet Parasitol ; 271: 57-63, 2019 Jul.
Article in English | MEDLINE | ID: mdl-31303205

ABSTRACT

The poultry red mite, Dermanyssus gallinae, is a blood-feeding ectoparasite that affects egg-laying hens worldwide. Strategies to control this parasite have focused in the use of entomopathogenic fungi, such as Metarhizium anisopliae. However, only a few studies have evaluated the use of Aspergillus oryzae to control D. gallinae and none of them have employed native strains. In the work presented here, a novel entomopathogenic fungus was isolated from a dead D. gallinae. The results of phylogenetic analysis showed 100% similarity between the isolated strain and those of two species, A. oryzae and Aspergillus flavus, and 99.82% similarity with A. parvisclerotigenus, which were in the same branch of the Flavi section of the genus Aspergillus. This entomopathogenic fungus was a non-aflatoxin B1 producer, as shown by the presence of aflatoxin B1 in the conidial infection suspension. Morphological features of fungus in comparison with A. oryzae and A. flavus indicated that the isolated strain belonged to A. oryzae, and was named Aspergillus sp. Dg-1. The pathogenicity of Aspergillus sp. Dg-1 on D. gallinae at different life stages was then assessed under laboratory conditions. The experiments showed that the isolated strain significantly increased the mortality rate in adult mites, up to 24.83 ± 2.25, compared to the mortality rates in the control group, which were 15.17 ± 2.75 (P < 0.05). However, Aspergillus sp. Dg-1 did not have pathogenic effects on the second nymph stage of D. gallinae. Our findings demonstrate that Aspergillus sp. Dg-1 has pathogenic effects on D. gallinae in their adult stage, presenting biocontrol potential against D. gallinae.


Subject(s)
Aspergillus oryzae/physiology , Mite Infestations/microbiology , Pest Control, Biological , Poultry Diseases/therapy , Trombiculidae/microbiology , Animals , Aspergillus oryzae/classification , Aspergillus oryzae/genetics , Aspergillus oryzae/pathogenicity , Life Cycle Stages , Phylogeny , Poultry Diseases/microbiology , Poultry Diseases/parasitology
13.
DNA Res ; 26(6): 465-472, 2019 Dec 01.
Article in English | MEDLINE | ID: mdl-31755931

ABSTRACT

Aspergillus oryzae is an industrially useful species, of which various strains have been identified; however, their genetic relationships remain unclear. A. oryzae was previously thought to be asexual and unable to undergo crossbreeding. However, recent studies revealed the sexual reproduction of Aspergillus flavus, a species closely related to A. oryzae. To investigate potential sexual reproduction in A. oryzae and evolutionary history among A. oryzae and A. flavus strains, we assembled 82 draft genomes of A. oryzae strains used practically. The phylogenetic tree of concatenated genes confirmed that A. oryzae was monophyletic and nested in one of the clades of A. flavus but formed several clades with different genomic structures. Our results suggest that A. oryzae strains have undergone multiple inter-genomic recombination events between A. oryzae ancestors, although sexual recombination among domesticated species did not appear to have occurred during the domestication process, at least in the past few decades. Through inter- and intra-cladal comparative analysis, we found that evolutionary pressure induced by the domestication of A. oryzae appears to selectively cause non-synonymous and gap mutations in genes involved in fermentation characteristics, as well as intra-genomic rearrangements, with the conservation of industrially useful catalytic enzyme-encoding genes.


Subject(s)
Adaptation, Physiological/genetics , Aspergillus oryzae/genetics , Genome, Fungal/genetics , Genomics/methods , Aspergillus flavus/genetics , Aspergillus flavus/metabolism , Aspergillus oryzae/classification , Aspergillus oryzae/metabolism , Evolution, Molecular , Fermentation/genetics , High-Throughput Nucleotide Sequencing/methods , Industrial Microbiology/methods , Mutation , Phylogeny , Recombination, Genetic , Reproduction/genetics , Species Specificity
14.
J Food Prot ; 70(12): 2916-34, 2007 Dec.
Article in English | MEDLINE | ID: mdl-18095455

ABSTRACT

Mold strains belonging to the species Aspergillus oryzae and Aspergillus sojae are highly valued as koji molds in the traditional preparation of fermented foods, such as miso, sake, and shoyu, and as protein production hosts in modern industrial processes. A. oryzae and A. sojae are relatives of the wild molds Aspergillus flavus and Aspergillus parasiticus. All four species are classified to the A. flavus group. Strains of the A. flavus group are characterized by a high degree of morphological similarity. Koji mold species are generally perceived of as being nontoxigenic, whereas wild molds are associated with the carcinogenic aflatoxins. Thus, reliable identification of individual strains is very important for application purposes. This review considers the pheno- and genotypic markers used in the classification of A. flavus group strains and specifically in the identification of A. oryzae and A. sojae strains. Separation of A. oryzae and A. sojae from A. flavus and A. parasiticus, respectively, is inconsistent, and both morphologic and molecular evidence support conspecificity. The high degree of identity is reflected by the divergent identification of reference cultures maintained in culture collections. As close relatives of aflatoxin-producing wild molds, koji molds possess an aflatoxin gene homolog cluster. Some strains identified as A. oryzae and A. sojae have been implicated in aflatoxin production. Identification of a strain as A. oryzae or A. sojae is no guarantee of its inability to produce aflatoxins or other toxic metabolites. Toxigenic potential must be determined specifically for individual strains. The species taxa, A. oryzae and A. sojae, are currently conserved by societal issues.


Subject(s)
Aflatoxins/metabolism , Aspergillus flavus/classification , Aspergillus flavus/genetics , Industrial Microbiology , Phylogeny , Aflatoxins/genetics , Aspergillus oryzae/classification , Aspergillus oryzae/genetics , DNA, Fungal/chemistry , DNA, Fungal/genetics , Fermentation , Food Microbiology , Fungal Proteins/genetics , Genotype , Phenotype , Polymorphism, Restriction Fragment Length , Polymorphism, Single-Stranded Conformational , Random Amplified Polymorphic DNA Technique , Sequence Analysis, DNA , Sequence Homology , Species Specificity
15.
J Biosci Bioeng ; 123(3): 287-293, 2017 Mar.
Article in English | MEDLINE | ID: mdl-27780671

ABSTRACT

Transcription activator-like effector nucleases (TALENs), which can generate DNA double-strand breaks at specific sites in the desired genome locus, have been used in many organisms as a tool for genome editing. In Aspergilli, including Aspergillus oryzae, however, the use of TALENs has not been validated. In this study, we performed genome editing of A. oryzae wild-type strain via error of nonhomologous end-joining (NHEJ) repair by transient expression of high-efficiency Platinum-Fungal TALENs (PtFg TALENs). Targeted mutations were observed as various mutation patterns. In particular, approximately half of the PtFg TALEN-mediated deletion mutants had deletions larger than 1 kb in the TALEN-targeting region. We also conducted PtFg TALEN-based genome editing in A. oryzae ligD disruptant (ΔligD) lacking the ligD gene involved in the final step of the NHEJ repair and found that mutations were still obtained as well as wild-type. In this case, the ratio of the large deletions reduced compared to PtFg TALEN-based genome editing in the wild-type. In conclusion, we demonstrate that PtFg TALENs are sufficiently functional to cause genome editing via error of NHEJ in A. oryzae. In addition, we reveal that genome editing using TALENs in A. oryzae tends to cause large deletions at the target region, which were partly suppressed by deletion of ligD.


Subject(s)
Aspergillus oryzae/genetics , Fungal Proteins/genetics , Gene Editing/methods , Mutagenesis, Site-Directed/methods , Mutation/genetics , Platinum/metabolism , Transcription Activator-Like Effector Nucleases/metabolism , Aspergillus oryzae/classification , DNA Breaks, Double-Stranded , DNA End-Joining Repair/genetics , Gene Deletion , Gene Targeting , Genome, Fungal/genetics
16.
Int J Biol Macromol ; 94(Pt B): 827-835, 2017 Jan.
Article in English | MEDLINE | ID: mdl-27293035

ABSTRACT

In this study, Aspergillus oryzae CH93 was isolated from soil sample and examined using molecular analysis. Following culture of A. oryzae CH93 under optimal enzyme production, a 47.5kDa extracellular protease was purified using ammonium sulfate precipitation and Q-Sepharose chromatography. The optimal pH 8 and temperature of 50°C obtained for the isolated protease. Sodium dodecyl sulfate (SDS), cetyltrimethyl ammonium bromide (CTAB), H2O2 decreased activity, while Triton X-100 and phenylmethanesulfonyl fluoride (PMSF) had no inhibitory effect on the enzyme activity; meanwhile, 2-mercaptoethanol and ethylenediaminetetraacetic acid (EDTA) declined the protease activity. Isoamyl alcohol and acetone (30%) enhanced activity whereas 2-propanol, isopropanol and dimethyl sulfoxide (DMSO) (30%) reduced protease activity. The enzyme exhibited a half-life of 100min at its optimum temperature. Among five substrates of bovine serum albumin (BSA), N-acetyl-l-tyrosine ethyl ester monohydrate (ATEE), casein, azocasein and gelatin results showed that casein is the best substrate with Vmax of 0.1411±0.004µg/min and Km of 2.432±0.266µg/ml. In conclusion, the extracted protease from A. oryzae CH93 as a fungal source possessed biochemical features which could be useful in some application usages.


Subject(s)
Aspergillus oryzae/enzymology , Bacterial Proteins/chemistry , Endopeptidases/chemistry , Fungal Proteins/chemistry , Protease Inhibitors/chemistry , Soil Microbiology , 2-Propanol/chemistry , Aspergillus oryzae/chemistry , Aspergillus oryzae/classification , Bacterial Proteins/biosynthesis , Bacterial Proteins/isolation & purification , Caseins/chemistry , Dimethyl Sulfoxide/chemistry , Edetic Acid/chemistry , Endopeptidases/biosynthesis , Endopeptidases/isolation & purification , Enzyme Stability , Fungal Proteins/biosynthesis , Fungal Proteins/isolation & purification , Half-Life , Hydrogen-Ion Concentration , Mercaptoethanol/chemistry , Phylogeny , Substrate Specificity , Temperature
17.
Int J Food Microbiol ; 108(2): 172-7, 2006 Apr 25.
Article in English | MEDLINE | ID: mdl-16430983

ABSTRACT

Aspergillus flavus is the main etiological agent for aflatoxin contamination of crops. Its close relative, A. oryzae, does not produce aflatoxins and has been widely used to produce fermented foods. We compared the phylogeny of A. oryzae isolates and L- and S-type sclerotial isolates of A. flavus using single nucleotide polymorphisms in the omtA gene in the aflatoxin biosynthesis gene cluster and deletions in and distal to the norB-cypA intergenic region as phylogenetic signals. Aflatoxin-producing ability and sclerotial size also were weighted in the analysis. Like A. flavus, the A. oryzae isolates form a polyphyletic assemblage. A. oryzae isolates in one clade strikingly resemble an A. flavus subgroup of atoxigenic L-type isolates. All toxigenic S-type isolates closely resemble another subgroup of atoxigenic L-type isolates. Because atoxigenic S-type isolates are extremely rare, we hypothesize that loss of aflatoxin production in S-type isolates may occur concomitantly with a change to L-type sclerotia. All toxigenic L-type isolates, unlike A. oryzae, have a 1.0 kb deletion in the norB-cypA region. Although A. oryzae isolates, like S-type, have a 1.5 kb deletion in the norB-cypA region, none were cladally related to S-type A. flavus isolates. Our results show that A. flavus populations are genetically diverse. A. oryzae isolates may descend from certain atoxigenic L-type A. flavus isolates.


Subject(s)
Aflatoxins/biosynthesis , Aspergillus flavus/classification , Aspergillus oryzae/classification , DNA, Fungal/analysis , Food Contamination/analysis , Polymorphism, Single Nucleotide , Aspergillus flavus/genetics , Aspergillus oryzae/genetics , Base Sequence , Food Microbiology , Gene Expression Regulation, Fungal , Genes, Fungal , Molecular Sequence Data , Phylogeny , Sequence Analysis, DNA
18.
J Biosci Bioeng ; 102(6): 564-7, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17270723

ABSTRACT

Aspergillus oryzae RIB40 niaD(-) was transformed using a plasmid constructed with the A. oryzae phytase gene and pNAN8142 vector. The culture broth of the transformant, which was grown in a medium containing starch as a carbon source and polyvinylpyrrolidone showed phytase activity of a maximum of 2.0 units ml(-1) at 37 degrees C, pH 5.5.


Subject(s)
6-Phytase/chemistry , 6-Phytase/metabolism , Aspergillus oryzae/classification , Aspergillus oryzae/physiology , Plants, Genetically Modified/enzymology , Protein Engineering/methods , 6-Phytase/genetics , Enzyme Activation , Gene Expression/physiology , Recombinant Proteins/metabolism , Species Specificity
19.
Int J Food Microbiol ; 200: 66-71, 2015 May 04.
Article in English | MEDLINE | ID: mdl-25689355

ABSTRACT

Aspergillus oryzae and Aspergillus flavus are closely related fungal species. The A. flavus morphotype that produces numerous small sclerotia (S strain) and aflatoxin has a unique 1.5 kb deletion in the norB-cypA region of the aflatoxin gene cluster (i.e. the S genotype). Phylogenetic studies have indicated that an isolate of the nonaflatoxigenic A. flavus with the S genotype is the ancestor of A. oryzae. Genome sequence comparison between A. flavus NRRL3357, which produces large sclerotia (L strain), and S-strain A. flavus 70S identified a region (samA-rosA) that was highly variable in the two morphotypes. A third type of samA-rosA region was found in A. oryzae RIB40. The three samA-rosA types were later revealed to be commonly present in A. flavus L-strain populations. Of the 182 L-strain A. flavus field isolates examined, 46%, 15% and 39% had the samA-rosA type of NRRL3357, 70S and RIB40, respectively. The three types also were found in 18 S-strain A. flavus isolates with different proportions. For A. oryzae, however, the majority (80%) of the 16 strains examined had the RIB40 type and none had the NRRL3357 type. The results suggested that A. oryzae strains in the current culture collections were mostly derived from the samA-rosA/RIB40 lineage of the nonaflatoxigenic A. flavus with the S genotype.


Subject(s)
Aspergillus oryzae/genetics , Bacterial Proteins/genetics , Genetic Variation , Phylogeny , Aflatoxins/genetics , Aspergillus oryzae/classification , Base Sequence , Genotype , Multigene Family
20.
Appl Biochem Biotechnol ; 175(6): 3148-61, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25604952

ABSTRACT

In the current study, fermentation broth of Aspergillus oryzae HML366 in sugar cane bagasse was subjected to ultrafiltration and ion exchange chromatography, and two xylanases, XynH1 and XynH2, were purified. Time-of-flight mass spectrometry coupled with SDS-PAGE analysis revealed that XynH1 is identical to the hypothetical A. oryzae RIB40 protein XP_001826985.1, with a molecular weight of 33.671 kDa. Likewise, XynH2 was identified as xylanase XynF1 with a molecular weight of 35.402 kDa. Sequence analysis indicated that XynH1 belongs to glycosyl hydrolases family 10. The specific activity of XynH1 was measured at 476.9 U/mg. Optimal xylanase activity was observed at pH 6.0, and enzyme remained active within pH 4.0-10.0 and at a temperature below 70 °C. Mg(2+), Mn(2+), Ca(2+), and K(+) enhanced the XynH1 xylanase activity to 146, 122, 114, and 108%, respectively. XynH1 hydrolyzed Birchwood xylan and Larchwood xylan effectively. The K m and V max of XynH1 values determined were 1.16 mM and 336 µmol/min/mg with Birchwood xylan as the substrate. A. oryzae HML366 xylanase XynH1 showed superior heat and pH tolerance, therefore may have significant applications in paper and biofuel industries. These studies constitute the first investigation of the xylanase activities of the hypothetical protein XP_001826985.1 form A. oryzae.


Subject(s)
Aspergillus oryzae/enzymology , Endo-1,4-beta Xylanases/chemistry , Endo-1,4-beta Xylanases/isolation & purification , Fungal Proteins/chemistry , Fungal Proteins/isolation & purification , Amino Acid Sequence , Aspergillus oryzae/classification , Aspergillus oryzae/genetics , Aspergillus oryzae/isolation & purification , Endo-1,4-beta Xylanases/genetics , Endo-1,4-beta Xylanases/metabolism , Enzyme Stability , Fungal Proteins/genetics , Fungal Proteins/metabolism , Hot Temperature , Kinetics , Molecular Sequence Data , Molecular Weight , Phylogeny , Saccharum/metabolism , Saccharum/microbiology , Sequence Alignment , Soil Microbiology , Substrate Specificity
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