The complex geography of domestication of the African rice Oryza glaberrima.

While the domestication history of Asian rice has been extensively studied, details of the evolution of African rice remain elusive. The inner Niger delta has been suggested as the center of origin but molecular data to support this hypothesis is lacking. Here, we present a comprehensive analysis of the evolutionary and domestication history of African rice. By analyzing whole genome re-sequencing data from 282 individuals of domesticated African rice Oryza glaberrima and its progenitor O. barthii, we hypothesize a non-centric (i.e. multiregional) domestication origin for African rice. Our analyses showed genetic structure within O. glaberrima that has a geographical association. Furthermore, we have evidence that the previously hypothesized O. barthii progenitor populations in West Africa have evolutionary signatures similar to domesticated rice and carried causal domestication mutations, suggesting those progenitors were either mislabeled or may actually represent feral wild-domesticated hybrids. Phylogeographic analysis of genes involved in the core domestication process suggests that the origins of causal domestication mutations could be traced to wild progenitors in multiple different locations in West and Central Africa. In addition, measurements of panicle threshability, a key early domestication trait for seed shattering, were consistent with the gene phylogeographic results. We suggest seed non-shattering was selected from multiple genotypes, possibly arising from different geographical regions. Based on our evidence, O. glaberrima was not domesticated from a single centric location but was a result of diffuse process where multiple regions contributed key alleles for different domestication traits.

Distillers' dried grains with solubles (DDGS) and its potential as fermentation feedstock.

Distillers' dried grain with solubles (DDGS) is a byproduct of bioethanol fermentation, which uses the dry milling technology for starch-rich grains such as corn, wheat, and barley. The current interest in bioethanol is increasing due to the need for renewable liquid fuels specifically in the transportation sector. Since DDGS is rich in crude protein, fat, fiber, vitamins, and minerals, it is currently used as aquaculture, livestock, and poultry feeds. In recent years, DDGS has been used as feedstock in the production of value-added products via microbial fermentation. Numerous studies reported the production organic acids, methane, biohydrogen, and hydrolytic enzymes using DDGS. While DDGS contains remarkable amounts of macronutrients, pre-treatment of DDGS is required for release of the fermentable sugars. The pre-treatment methods such as chemical, physical, and biological origin are either solely used or combined to obtain maximal yields for different applications. Therefore, this review summarizes some of the most prominent pre-treatment processes generating high fermentable sugar yields for the productions of value-added products in the last 5 years. A special focus has been given to the effect of the variability of DDGS on the final product. Integration of hydrolytic enzyme production with the traditional bioethanol production facilities has been discussed for further improvement of bioethanol, methane, and biohydrogen using DDGS as fermentation feedstock.Key points• Distillers' dried grain with solubles (DDGS) has high nutritional value, but the nutritional profile is variable.• DDGS can be used for microbial fermentation feedstock to produce value-added products.• A review of the microbial products using DDGS is given for the last 5 years.• DDGS has the potential to replace expensive feedstocks of value-added products.

Developments and Prospects in Imperative Underexploited Vegetable Legumes Breeding: A Review.

Vegetable legumes are an essential source of carbohydrates, vitamins, and minerals, along with health-promoting bioactive chemicals. The demand for the use of either fresh or processed vegetable legumes is continually expanding on account of the growing consumer awareness about their well-balanced diet. Therefore, sustaining optimum yields of vegetable legumes is extremely important. Here we seek to present d etails of prospects of underexploited vegetable legumes for food availability, accessibility, and improved livelihood utilization. So far research attention was mainly focused on pulse legumes' performance as compared to vegetable legumes. Wild and cultivated vegetable legumes vary morphologically across diverse habitats. This could make them less known, underutilized, and underexploited, and make them a promising potential nutritional source in developing nations where malnutrition still exists. Research efforts are required to promote underexploited vegetable legumes, for improving their use to feed the ever-increasing population in the future. In view of all the above points, here we have discussed underexploited vegetable legumes with tremendous potential; namely, vegetable pigeon pea (Cajanus cajan), cluster bean (Cyamopsis tetragonoloba), winged bean (Psophocarpus tetragonolobus), dolichos bean (Lablab purpureus), and cowpea (Vigna unguiculata), thereby covering the progress related to various aspects such as pre-breeding, molecular markers, quantitative trait locus (QTLs), genomics, and genetic engineering. Overall, this review has summarized the information related to advancements in the breeding of vegetable legumes which will ultimately help in ensuring food and nutritional security in developing nations.

The increased use of diversity in cereal cropping requires more descriptive precision.

BACKGROUND: Until 100 years ago, cereals were grown only as populations with varying amounts of genetic diversity both within and among different crops. However, since the nineteenth century, methods for isolating and reproducing monocultural varieties have become universal, particularly among larger producers, leading to widespread within-field genetic monotony. A range of approaches is now being used to increase genetic diversity within and among crops including bringing back into cultivation a range of populations using a variety of different names, such as old varieties, landraces, ancient grains, heritage varieties, heirloom varieties, and mixtures. The objective of this paper, which is the result of the First International Conference on Landraces (Bologna, July 2018), is to contribute to the more precise definition of the names that are used more frequently. RESULTS: One early approach to increasing diversity among such monocultures was the use of variety mixtures, initially using static mixtures, meaning mixtures that were re-constituted from their original component varieties for each growing season. Some farmers, however, preferred to re-grow static mixtures from the harvested, and therefore selected, seed, thus converting them to what can be termed dynamic mixtures. Consequent natural inter-crossing within such dynamic mixtures means that, within a few seasons, following natural segregation, recombination and selection, they become populations. There is a wide body of literature on both static and dynamic mixtures, the discussion of which is beyond the scope of this paper. More recently, interest has been increasing in modern forms of evolutionary breeding of populations through direct hybridization of monocultural varieties followed by segregation and, commonly, natural selection, often in target production areas. As expected from evolutionary theory, such populations exhibit considerable resilience under variable environmental conditions, which is increasingly important in relation to the complexity of climate change. CONCLUSION: To help identify different approaches, and communicate information, definitions can be based on the approximate known historical age of the plant material in question and its genetic structure. © 2019 Society of Chemical Industry.

Genetic and Molecular Control of Floral Organ Identity in Cereals.

Grasses represent a major family of monocots comprising mostly cereals. When compared to their eudicot counterparts, cereals show a remarkable morphological diversity. Understanding the molecular basis of floral organ identity and inflorescence development is crucial to gain insight into the grain development for yield improvement purposes in cereals, however, the exact genetic mechanism of floral organogenesis remains elusive due to their complex inflorescence architecture. Extensive molecular analyses of Arabidopsis and other plant genera and species have established the ABCDE floral organ identity model. According to this model, hierarchical combinatorial activities of A, B, C, D, and E classes of homeotic genes regulate the identity of different floral organs with partial conservation and partial diversification between eudicots and cereals. Here, we review the developmental role of A, B, C, D, and E gene classes and explore the recent advances in understanding the floral development and subsequent organ specification in major cereals with reference to model plants. Furthermore, we discuss the evolutionary relationships among known floral organ identity genes. This comparative overview of floral developmental genes and associated regulatory factors, within and between species, will provide a thorough understanding of underlying complex genetic and molecular control of flower development and floral organ identity, which can be helpful to devise innovative strategies for grain yield improvement in cereals.

Identification of Rice Large Grain Gene GW2 by Whole-Genome Sequencing of a Large Grain-Isogenic Line Integrated with Japonica Native Gene and Its Linkage Relationship with the Co-integrated Semidwarf Gene d60 on Chromosome 2.

Genetic analysis of "InochinoIchi," an exceptionally large grain rice variety, was conducted through five continuous backcrosses with Koshihikari as a recurrent parent using the large grain F3 plant in Koshihikari × Inochinoichi as a nonrecurrent parent. Thorough the F2 and all BCnF2 generations, large, medium, and small grain segregated in a 1:2:1 ratio, indicating that the large grain is controlled by a single allele. Mapping by using simple sequence repeat (SSR) and single nucleotide polymorphism (SNP) markers with small grain homozygous segregants in the F2 of Nipponbare × Inochinoichi, revealed linkage with around 7.7 Mb markers from the distal end of the short arm of chromosome 2. Whole-genome sequencing on a large grain isogenic Koshihikari (BC4F2) using next-generation sequencing (NGS) identified a single nucleotide deletion in GW2 gene, which is located 8.1 Mb from the end of chromosome 2, encoding a RING protein with E3 ubiquitin ligase activity. The GW2-integrated isogenic Koshihikari showed a 34% increase in thousand kernel weight compared to Koshihikari, while retaining a taste score of 80. We further developed a large grain/semi-dwarf isogenic Koshihikari integrated with GW2 and the semidwarfing gene d60, which was found to be localized on chromosome 2. The combined genotype secured high yielding while providing robustness to withstand climate change, which can contribute to the New Green Revolution.

Estimates of the quality of complementary feeding among Vietnamese infants aged 6-23 months varied by how commercial baby cereals were classified in 24-h recalls.

The World Health Organization's (WHO) standardized questionnaire for assessing infant and young child feeding practices does not include commercial baby cereals (CBC), which are derived from several food groups and are fortified with micronutrients. We examined how different scenarios for classifying CBC affect estimates of the quality of complementary feeding in children ages 6-23 months in Vietnam in 2014 (n = 4811). In addition to the WHO standardized 24-h recall questionnaire for infant and young child feeding, we asked mothers about the consumption of CBC. The five resulting scenarios were S1 - omitted CBC; S2 - CBC classified as grains; S3 - as grains and dairy; S4 - as grains, dairy and fruit/vegetables; and S5 - as grains, dairy, fruit/vegetables and any others. Including CBC resulted in 4-11 percentage points higher in the prevalence of children who were fed each of the six food groups compared with what was reported in the WHO standardized questionnaire. Minimum dietary diversity (% fed ≥ 4 out of the 7 food groups) was higher in S5 (90%) than in S1 (84%), S2 (84%), S3 (85%) and S4 (86%). Minimum acceptable diet was also higher in scenarios S5 (80%) than in S1 (74%), S2 (75%), S3 (75%) and S4 (77%). Consumption of iron-rich foods was 94% when CBC was accounted, which was higher than the alternative scenario (89%). In summary, when CBC were included, population-level estimates of dietary quality were higher than when CBC were omitted. Guidance is required from the WHO about how to account for the consumption of CBC when estimating the quality of complementary feeding.

Proteomic profiling of 16 cereal grains and the application of targeted proteomics to detect wheat contamination.

Global proteomic analysis utilizing SDS-PAGE, Western blotting and LC-MS/MS of total protein and gluten-enriched extracts derived from 16 economically important cereals was undertaken, providing a foundation for the development of MS-based quantitative methodologies that would enable the detection of wheat contamination in foods. The number of proteins identified in each grain correlated with the number of entries in publicly available databases, highlighting the importance of continued advances in genome sequencing to facilitate accurate protein identification. Subsequently, candidate wheat-specific peptide markers were evaluated by multiple-reaction monitoring MS. The selected markers were unique to wheat, yet present in a wide range of wheat varieties that represent up to 80% of the bread wheat genome. The final analytical method was rapid (15 min) and robust (CV < 10%), showed linearity (R(2) > 0.98) spanning over 3 orders of magnitude, and was highly selective and sensitive with detection down to 15 mg/kg in intentionally contaminated soy flour. Furthermore, application of this technology revealed wheat contamination in commercially sourced flours, including rye, millet, oats, sorghum, buckwheat and three varieties of soy.

Lack of Healthy Food in Small-Size to Mid-Size Retailers Participating in the Supplemental Nutrition Assistance Program, Minneapolis-St. Paul, Minnesota, 2014.

INTRODUCTION: The US Department of Agriculture has stocking criteria for healthy foods among Supplemental Nutrition Assistant Program (SNAP)-authorized retailers. Increased access to healthy food could improve diet quality among SNAP participants, which has implications for chronic disease prevention. The objective of this study was to quantify healthy foods stocked in small-size to mid-size retailers who are authorized under SNAP but not under the Special Supplemental Nutrition Program for Women, Infants, and Children (WIC). METHODS: We used formative, cross-sectional data from a large policy evaluation to conduct secondary analyses. Store audits were conducted in 2014 in 91 randomly selected, licensed food stores in Minneapolis and St. Paul, Minnesota. Supermarkets and retailers participating in WIC, which are required to stock healthy foods, were excluded as were other stores not reasonably expected to stock staple foods, such as specialty stores or produce stands. Availability of milk, fruits, vegetables, and whole-grain-rich foods was assessed. RESULTS: The 91 stores studied were corner stores, food-gas marts, dollar stores, and pharmacies. More than half carried 1 or more varieties of fat-free or low-fat milk, fresh or canned fruit, and whole-grain-rich cereal. However, only one-third stocked 1 or more varieties of fresh vegetables and only one-quarter stocked whole-grain-rich products, such as whole-grain-rich bread (26%) or tortillas (21%) or brown rice (25%). Few stores stocked at least 2 varieties of each product. CONCLUSIONS: Many stores did not stock a variety of healthy foods. The US Department of Agriculture should change policies to improve minimum stocking requirements for SNAP-authorized retailers.

Indigenous knowledge on landraces and fonio-based food in Benin.

Fonio is a traditional cereal cultivated in many West African countries, where farmers are often the guardians of a rich diversity of landraces or traditional varieties. An investigation conducted in northwest of Benin on indigenous knowledge about fonio landraces and fonio-based traditional foods allowed us to inventory 35 landraces identified by the farmers. Ipormoa, Namba, Icantoni or Kopognakè or Icantoga and Iporhouwan landraces were good to cook paste and couscous and easy to dehusk. Besides, Ipormoa and Iporhouwan landraces had interesting agronomic characteristics. Paste, porridge, and couscous were the main fonio-based foods consumed by farmers in northwest of Benin.

Effects of different types of solid feeds on health status and performance of Swiss veal calves. I. Basic feeding with milk by-products.

The objective of this study was to identify a suitable alternative to the current practice of complementing the feeding of milk by-products with straw. The influence of 5 different types of solid feeds on health and performance of Swiss veal calves was investigated in 2 production cycles of 200 veal calves each with a mean initial age of 40 days (d). The calves were housed in groups of 40 in stalls with outside pen. Liquid feeding consisted of a milk by-product combined with an additional skim milk powder ad libitum. Groups were assigned to 1 of the 5 following experimental solid feeds provided ad libitum: mix (composition: soy flakes, corn, barley, wheat, oat, barley middling, plant oil, molasses), whole plant corn pellets, corn silage, hay, and wheat straw as control. Daily dry matter intake per calf averaged 2.25 kg of the liquid food, 0.16 kg of straw, 0.33 kg of mix, 0.47 kg of corn silage, 0.38 kg of corn pellets, and 0.39 kg of hay. No significant differences (P > 0.05) among groups were found in calf losses that amounted to 4.8 % (68 % because of gastrointestinal disorders). Four percent of the calves were slaughtered prematurely. Daily doses of antibiotics were higher in the mix (36.9 d, P < 0.01) and in the corn silage groups (35 d, P < 0.01) compared to control. Compared to the 4 other groups, calves of the straw group showed the highest prevalence of abnormal ruminal content (73 %, P < 0.05), of abnormal ruminal papillae (42 %, P < 0.05), of abomasal fundic lesions (13.5 %, P < 0.1), and the lowest number of chewing movements per bolus (45, P < 0.05). The hemoglobin concentration averaged 85 g/l at the beginning and 99 g/l at the end of the fattening period with no significant differences among groups (P > 0.1). The duration of the fattening period averaged 114 d, slaughter age 157 d, and carcass weight 122 kg. The average daily weight gain (ADG) was highest in the control group straw (1.35 kg), and lowest in the hay group (1.22 kg, P < 0.01). The number of carcasses classified as C, H, and T (very high to medium quality) was lower in the hay group compared to straw (P < 0.01). No significant differences between groups were found in meat color (P > 0.1): 73 % of the carcasses were assessed as pale (267/364), 18 % as pink (66/364), and 9 % (31/364) as red. The results reveal that whole-plant corn pellets are most consistent with an optimal result combining the calves' health and fattening performance. Therefore, it can be recommended as an additional solid feed for veal calves under Swiss conditions.

Le but de cette étude était de trouver une alternative adéquate à l'affouragement complémentaire de paille chez les veaux d'engraissement. Au cours de 2 périodes d'engraissement avec chaque fois 200 veaux débutant leur engraissement à l'âge de 40 jours, on a étudié l'influence de 5 fourrages grossiers différents sur la santé et la productivité. Les veaux étaient détenus par groupe de 40 avec un accès libre à un enclos extérieur. Le fourrage liquide se composait d'un sous-produit lacté complété par la poudre de lait et offert ad libitum. On a offert à chaque groupe un des fourrages expérimentaux suivant : mix (composition : flocons de soya, maïs orges, blé, avoine, farine d'orge, huile végétale, mélasse), cubes de mais plante entière, silo de mais, foin et paille de blé pour le groupe de contrôle. La consommation journalière en poids de matière sèche s'élevait en moyenne par veau à 2.25 kg pour l'aliment liquide, 0.16 kg pour la paille, 0.33 kg pour le mix, 0.47 kg pour le silo de mais, 0.38 kg pour les cubes de mais et 0.39 kg pour le foin. Il y avait pas de différence significative entre les groupe quant aux pertes qui atteignaient un total 4.8 % (68 % pour des problèmes gastro-intestinaux). 4 % des veaux ont du être abattu précocement. Les veaux des groupes mix et silo de mais ont été traités plus longtemps avec un antibiotique que le groupe de contrôle paille (groupe mix : 36.9 jours, P < 0.01, groupe silo de mais 35 jours, P < 0.01). En comparaison avec les 4 autres groupes, les veaux du groupe paille présentaient plus de contenu anormal de la panse (73 %, P < 0.05), ils avaient plus fréquemment des villosités de la panse anormales (42 %, P < 0.05), plus fréquemment des lésions de la caillette (13.5 %, P < 0.01) et ils montraient la moins bonne rumination (45 coups par bolus, P < 0.05). La concentration moyenne en hémoglobine était de 85g/l au début et 99 g/l à la fin de l'engraissement sans différence significative entre les groupes (P > 0.01). La durée moyenne d'engraissement était de 180 jours, l'âge moyen d'abattage de 157 jours et le poids moyen à l'abattage de 122 kg. La prise de poids moyenne journalière était la plus importante chez les veaux du groupe paille (1.35 Kg) et la plus faible chez les veaux du groupe foin (1.22 kg, P < 0.01) Le nombre de carcasses classées bonnes à très bonnes était plus faible dans le groupe foins que dans le groupe paille. Pour ce qui est de la couleur de la viande, on ne pouvait pas constater de différence significative entre les groupes (P > 0.1): 73 % des carcasses était classées comme claires (267/364), 18 % comme roses (66/364) und 9 % comme rouges (31/364). Les présents résultats montrent que les cubes de mais plante entière correspondent le mieux aux besoins en matière de santé et productivité des veaux d'engraissement. Ils peuvent être donc recommandés comme alternative à l'affouragement de paille chez les veaux en Suisse.

[Quality classification standard of Dipsacus asperoides seed].

OBJECTIVE: To establish seed quality classification standard of Dipsacus asperoides. METHOD: Through the detection on seed purity, 1 000-grain weight, water content, germination rate of D. asperoides from different areas, and observation on seed external characters, the primary seed quality classification standard of D. asperoides was preliminarily formulated. RESULTS: The first level D. asperoides seed germination rate was over 85%, 1 000-grain weight above 3.94 g, purity above 90.95%, water content lower than 9.08%. The second level D. asperoides seed germination rate was over 64%, 1 000-grain weight was above 3.57 g, purity was over 83.66%, water content was above 10.23%. The third level seed germination rate was above 35%, 1 000-grain weight was above 3.04 g, purity was above 75.51%, water content was lower than 11.37%. CONCLUSION: Germination rate and 1 000-grain weight were the main indexes of quality classification standard, and purity and water content provide the important reference. This quality classification standard of D. asperoides was scientific and feasible, and can be used as the quality control standard of D. asperoides.

[The value of glycemic index and glycemic load from selected corn flakes eaten with milk]. / Wartosci indeksów i ladunków glikemicznych wybranych platków zbozowych spozywanych z mlekiem.

BACKGROUND: Carbohydrates consumed with the daily diet are the cause of fluctuations in the concentrations of glucose in the blood, known as the glycemic effect. Glucose content in blood after eating any meal, and usually reaches its maximum after 20-30 min after ingestion of food and then gradually decreases to 1-2 hours to return to fasting levels. Knowing the GI along with information on their composition and nutrient content is important in terms of knowing the effect of carbohydrates on health. OBJECTIVE: The glycemic indexes (GI) and the calculate values of the glycemic loads (GL) of the corn flakes eaten with milk (nesquik chocolate balls, cheerios, muesli tropical, fitness chocolate, oatmeal and instant flakes, corn flakes) were investigated. The relationship between IG and sex was calculated and examined. MATERIAL AND METHOD: 67 young, healthy volunteers: 42 women and 25 men participated in the study. The average age of the participants was between 23.1 +/- 1.0 years, mean BMI- 22.4 +/- 3.1 kg/m2. Cereal with milk were given in 50 grams of digestible carbohydrates. The reference product was a solution in water (250 ml) containing 50 g glucose. In the morning, 7 times the blood was calleced - on an empty stomach and 15, 30, 45, 60, 90 and 120 minutes after eating. RESULTS: An average value GI and GL were calculated (for women and men), which were respectively: 48,6 and 25,5 - the milk soup with nesquik chocolate balls, 67,5 and 36,1 the milk soup with cheerios, 58,8 and 31,9 - the milk soup with muesli tropical, 66,7 and 34,9 - the milk soup with fitness chocolate, 42,5 and 23,4 - the milk soup with oatmeal flakes, 54,0 and 29,5 - the milk soup with oatmeal instant flakes, 54,4 i 27,9 - the milk soup with corn flakes. CONCLUSIONS: The results allowed the meal for the meals of low and medium GI. Showed statistically significant correlation between the glycemic index and gender of respondents.

The meaning of 'fruits' and 'vegetables'.

OBJECTIVE: Fruit and vegetable consumption is a focus of research and nutrition education; yet, there is no universal agreement on the meaning of 'fruits' and 'vegetables'. Our objective was to describe survey respondent perceptions about a set of foods with regard to whether the food is a fruit, vegetable or something else. DESIGN: Three cross-sectional studies. SETTING: Two small studies involving cognitive interviewing sessions; and one large self-administered population survey. SUBJECTS: US adults in two small studies (n 55 and 80) and one large survey (n 3312), all with multiple race/ethnicities. RESULTS: Perceptions varied. In the survey, rice was considered a vegetable by about 20 % of respondents. In one small study, Spanish speakers were more likely to consider rice a vegetable, and Chinese speakers less likely, than were English speakers. Black beans were frequently classified as something other than vegetable or fruit. Among Hispanics, Spanish speakers were less likely than English speakers to consider beans a vegetable. Overall, tomatoes were classified as both fruit and vegetable, and these perceptions varied by race/ethnicity. CONCLUSIONS: Substantial disagreement among the fruit, vegetable and other food domains highlights the importance of clearly defining the desired constructs. Foods that require specific instruction include rice, dried beans, potatoes, tomatoes and fruits and vegetables in mixtures and condiments. For measurement, additional questions or explanations may be needed to clarify which foods are of interest. For communication, the global message to increase consumption of fruit and vegetables should be reinforced with specific guidance.

The effect of cultivation intensity on mineral content in grain, flakes and bran of winter wheat (Triticum aestivum L.)--preliminary study.

The aim of the study was to assess the effect of cultivation intensity on the Ca, Mg, Zn and Fe contents in winter wheat grain, flakes and bran. The initial material for the study comprised grain, flakes and bran of two winter wheat cultivars Kobiera and Bogatka. These cultivars were from two strain testing stations located in Lower Silesia, Zybiszów and Tomaszów Boleslawiecki in the years 2007-2008. The cultivation was conducted on two intensity levels: lower and higher The mineral content was determined by the flame atomic absorption spectrometry (FAAS). The investigation showed that the level of cultivation had no significant effect on the content of all minerals analyzed in grain, flakes and bran. The Ca content in wheat grain, flakes and bran was stable, regardless of varieties, weather conditions, tillage intensity and cultivation place, furthermore soil conditions significantly affect Fe content in wheat grain, flakes and bran.

Genetic mapping for grain quality and yield-attributed traits in Basmati rice using SSR-based genetic map.

Rice grain shape and nutritional quality traits have high economic value for commercial production of rice and largely determine the market price, besides influencing the global food demand for high-quality rice. Detection, mapping and exploitation of quantitative trait loci (QTL) associated with kernel elongation and grain quality in Basmati rice is considered as an efficient strategy for improving the kernel elongation and grain quality trait in rice varieties. Genetic information in rice for most of these traits is scanty and needed interventions through the use of molecular markers. A recombinant inbred lines (RIL) population consisting of 130 lines generated from the cross involving Basmati 370, a superior quality Basmati variety and Pusa Basmati 1121, a Basmati derived variety were used to map the QTLs for 9 important grain quality and yield related traits. Correlation studies showed that various components of yield show a significant positive relationship with grain yield. A genetic map was constructed using 70 polymorphic simple sequence repeat (SSR) markers spanning a genetic distance of 689.3 cM distributed over 12 rice chromosomes. Significant variation was observed and showed transgressive segregation for grain quality traits in RIL population. A total of 20 QTLs were identified associated with nine yield and quality traits. Epistatic interactions were also identified for grain quality related traits indicating complex genetic nature inheritance. Therefore, the identified QTLs and flanking marker information could be utilized in the marker-assisted selection to improve kernel elongation and nutritional grain quality traits in rice varieties.

Back in Time for Breakfast: An Analysis of the Changing Breakfast Cereal Aisle.

Breakfast cereal improves overall diet quality yet is under constant scrutiny with assertions that the category has not improved over time. This study aimed to comprehensively analyse the category of breakfast cereals, the nutritional values, and health claims across eight distinct sub-categories at four time points (2013, 2015, 2018, and 2020). An audit of products from four major supermarkets in metropolitan Sydney (Aldi, Coles, IGA, and Woolworths) collected ingredient lists, nutrition information, claims and Health Star Rating (HSR) for biscuits and bites; brans; bubbles, puffs, and flakes; granola and clusters; hot cereal flavoured; hot cereal plain; muesli; breakfast biscuits. The median (IQR) were calculated for energy, protein, fat, saturated fat, carbohydrate, sugars, dietary fibre, and sodium for comparisons over time points by nutrient. Data from 2013 was compared with 2020 (by sub-category and then for a sub-section of common products available at each time point). Product numbers between 2013 (n = 283) and 2020 (n = 543) almost doubled, led by granola and clusters. Whole grain cereals ≥ 8 g/serve made up 67% of products (↑114%). While there were positive changes in nutrient composition over time within the full data set, the most notable changes were in the nutrition composition of cereals marketed as the same product in both years (n = 134); with decreases in mean carbohydrate (2%), sugar (10%) and sodium (16%) (p < 0.000), while protein and total fat increased significantly (p = 0.036; p = 0.021). Claims regarding Dietary Fibre and Whole Grain doubled since 2013. Analysis of sub-categories of breakfast cereal assisted in identifying some changes over time, but products common to both timeframes provided a clearer analysis of change within the breakfast category, following introduction of HSR. Whole grain products were lower in the two target nutrients, sodium and sugars, and well-chosen products represent a better choice within this category.

Genetic structure and ecogeographical adaptation in wild barley (Hordeum chilense Roemer et Schultes) as revealed by microsatellite markers.

BACKGROUND: Multi-allelic microsatellite markers have become the markers of choice for the determination of genetic structure in plants. Synteny across cereals has allowed the cross-species and cross-genera transferability of SSR markers, which constitute a valuable and cost-effective tool for the genetic analysis and marker-assisted introgression of wild related species. Hordeum chilense is one of the wild relatives with a high potential for cereal breeding, due to its high crossability (both interspecies and intergenera) and polymorphism for adaptation traits. In order to analyze the genetic structure and ecogeographical adaptation of this wild species, it is necessary to increase the number of polymorphic markers currently available for the species. In this work, the possibility of using syntenic wheat SSRs as a new source of markers for this purpose has been explored. RESULTS: From the 98 wheat EST-SSR markers tested for transferability and polymorphism in the wild barley genome, 53 primer pairs (54.0%) gave cross-species transferability and 20 primer pairs (20.4%) showed polymorphism. The latter were used for further analysis in the H. chilense germplasm. The H. chilense-Triticum aestivum addition lines were used to test the chromosomal location of the new polymorphic microsatellite markers. The genetic structure and diversity was investigated in a collection of 94 H. chilense accessions, using a set of 49 SSR markers distributed across the seven chromosomes. Microsatellite markers showed a total of 351 alleles over all loci. The number of alleles per locus ranged from two to 27, with a mean of 7.2 alleles per locus and a mean Polymorphic Information Content (PIC) of 0.5. CONCLUSIONS: According to the results, the germplasm can be divided into two groups, with morphological and ecophysiological characteristics being key determinants of the population structure. Geographic and ecological structuring was also revealed in the analyzed germplasm. A significant correlation between geographical and genetic distance was detected in the Central Chilean region for the first time in the species. In addition, significant ecological influence in genetic distance has been detected for one of the population structure groups (group II) in the Central Chilean region. Finally, the association of the SSR markers with ecogeographical variables was investigated and one marker was found significantly associated with precipitation. These findings have a potential application in cereal breeding.

Diversity of chromosomal karyotypes in maize and its relatives.

Maize is a highly diverse species on the gene sequence level. With the recent development of methods to distinguish each of the 10 pairs of homologues in somatic root tip spreads, a wide collection of maize lines was subjected to karyotype analysis to serve as a reference for the community and to examine the spectrum of chromosomal features in the species. The core nested association mapping progenitor collection and additional selections of diversity lines were examined. Commonly used inbred lines were included in the analysis. The centromere 4 specific repeat and ribosomal RNA loci were invariant. The CentC centromere repeat exhibited extensive differences in quantity on any particular chromosome across lines. Knob heterochromatin was highly variable with locations at many sites in the genome. Lastly, representative examples from other species in the genus Zea (teosintes) were examined, which provide information on the evolution of chromosomal features.

A review on ochratoxin A occurrence and effects of processing of cereal and cereal derived food products.

Ochratoxin A (OTA) continues to grab global attention and concern for the hazard and impact that embody for both human and animals, based on its toxicity and occurrence. Despite OTA has been described in a myriad of foodstuffs, cereal and its derivatives remain the major contributors to OTA exposure. For that reason, a critical review on OTA occurrence reported by recent studies worldwide focusing on unprocessed and processed cereal foodstuffs is made in this work. Special attention is drawn to the major cereal derived products, namely flour, bread, breakfast cereals, baby/infant foods and the inherently involved technological food processing methods and its influence on the redistribution and chemical modification of OTA. The paper further examines the factors that influence the OTA content of cereal and its derived products, explicitly the different ecological niches of the ochratoxigenic mycobiota -Aspergillus spp. and Penicillium verrucosum, the agricultural practice involved, harvest procedures and storage conditions, the type of grain, and the nature and extent of technological processing as well as the ultimate stages of analytical quality level of the sampling and analysis of the suspected ingredients or foods.