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1.
Prostate ; 82(2): 260-268, 2022 02.
Article in English | MEDLINE | ID: mdl-34783071

ABSTRACT

BACKGROUND: Inactivating missense mutations in the SPOP gene, encoding speckle-type poxvirus and zinc-finger protein, are one of the most common genetic alterations in prostate cancer. METHODS: We retrospectively identified 72 consecutive prostate cancer patients with somatic SPOP mutations, through next-generation sequencing analysis, who were treated at the Johns Hopkins Hospital. We evaluated clinical and genomic characteristics of this SPOP-mutant subset. RESULTS: SPOP alterations were clustered in the MATH domain, with hotspot mutations involving the F133 and F102 residues. The most frequent concurrent genetic alterations were in APC (16/72 [22%]), PTEN (13/72 [18%]), and TP53 (11/72 [15%]). SPOP-mutant cancers appeared to be mutually exclusive with tumors harboring the TMPRSS2-ERG fusion, and were significantly enriched for Wnt pathway (APC, CTNNB1) mutations and de-enriched for TP53/PTEN/RB1 alterations. Patients with mtSPOP had durable responses to androgen deprivation therapy (ADT) with a median time-to-castration-resistance of 42.0 (95% confidence interval [CI], 25.7-60.8) months. However, time-to-castration-resistance was significantly shorter in SPOP-mutant patients with concurrent TP53 mutations (hazard ratio [HR] 4.53; p = 0.002), HRD pathway (ATM, BRCA1/2, and CHEK2) mutations (HR 3.19; p = 0.003), and PI3K pathway (PTEN, PIK3CA, and AKT1) alterations (HR 2.69; p = 0.004). In the castration-resistant prostate cancer setting, median progression-free survival was 8.9 (95% CI, 6.7-NR) months on abiraterone and 7.3 (95% CI, 3.2-NR) months on enzalutamide. There were no responses to PARP inhibitor treatment. CONCLUSIONS: SPOP-mutant prostate cancers represent a unique subset with absent ERG fusions and frequent Wnt pathway alterations, with potentially greater dependency on androgen signaling and enhanced responsiveness to ADT. Outcomes are best for SPOP-altered patients without other concurrent mutations.


Subject(s)
Androgen Receptor Antagonists/therapeutic use , Nuclear Proteins/genetics , Prostatic Neoplasms , Repressor Proteins/genetics , Serine Endopeptidases/genetics , Disease Progression , Gene Fusion/physiology , High-Throughput Nucleotide Sequencing/methods , Humans , Male , Middle Aged , Mutation, Missense , Progression-Free Survival , Prostatic Neoplasms/drug therapy , Prostatic Neoplasms/genetics , Prostatic Neoplasms/pathology , Transcriptional Regulator ERG/genetics , Treatment Outcome , Wnt Signaling Pathway/physiology
2.
J Pathol ; 242(3): 347-357, 2017 07.
Article in English | MEDLINE | ID: mdl-28418072

ABSTRACT

Acute basophilic leukaemia (ABL) is a rare subtype of acute myeloblastic leukaemia. We previously described a recurrent t(X;6)(p11;q23) translocation generating an MYB-GATA1 fusion gene in male infants with ABL. To better understand its role, the chimeric MYB-GATA1 transcription factor was expressed in CD34-positive haematopoietic progenitors, which were transplanted into immunodeficient mice. Cells expressing MYB-GATA1 showed increased expression of markers of immaturity (CD34), of granulocytic lineage (CD33 and CD117), and of basophilic differentiation (CD203c and FcϵRI). UT-7 cells also showed basophilic differentiation after MYB-GATA1 transfection. A transcriptomic study identified nine genes deregulated by both MYB-GATA1 and basophilic differentiation. Induction of three of these genes (CCL23, IL1RL1, and NTRK1) was confirmed in MYB-GATA1-expressing CD34-positive cells by reverse transcription quantitative polymerase chain reaction. Interleukin (IL)-33 and nerve growth factor (NGF), the ligands of IL-1 receptor-like 1 (IL1RL1) and neurotrophic receptor tyrosine kinase 1 (NTRK1), respectively, enhanced the basophilic differentiation of MYB-GATA1-expressing UT-7 cells, thus demonstrating the importance of this pathway in the basophilic differentiation of leukaemic cells and CD34-positive primary cells. Finally, gene reporter assays confirmed that MYB and MYB-GATA1 directly activated NTRK1 and IL1RL1 transcription, leading to basophilic skewing of the blasts. MYB-GATA1 is more efficient than MYB, because of better stability. Our results highlight the role of IL-33 and NGF receptors in the basophilic differentiation of normal and leukaemic cells. Copyright © 2017 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.


Subject(s)
Interleukin-33/physiology , Leukemia, Basophilic, Acute/etiology , Receptors, Nerve Growth Factor/physiology , Animals , Cell Transformation, Neoplastic/genetics , Female , GATA1 Transcription Factor/genetics , Gene Fusion/physiology , Hematopoietic Stem Cells/physiology , Male , Mice, SCID , Neoplasm Transplantation , Oncogene Proteins v-myb/genetics , Receptor, trkA/metabolism , Transcription Factors/metabolism , Transfection , Transplantation, Heterologous
3.
Transgenic Res ; 24(6): 945-53, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26138876

ABSTRACT

Wax esters are hydrophobic lipids consisting of a fatty acid moiety linked to a fatty alcohol with an ester bond. Plant-derived wax esters are today of particular concern for their potential as cost-effective and sustainable sources of lubricants. However, this aspect is hampered by the fact that the level of wax esters in plants generally is too low to allow commercial exploitation. To investigate whether wax ester biosynthesis can be increased in plants using transgenic approaches, we have here exploited a fusion between two bacterial genes together encoding a single wax ester-forming enzyme, and targeted the resulting protein to chloroplasts in stably transformed tobacco (Nicotiana benthamiana) plants. Compared to wild-type controls, transgenic plants showed both in leaves and stems a significant increase in the total level of wax esters, being eight-fold at the whole plant level. The profiles of fatty acid methyl ester and fatty alcohol in wax esters were related, and C16 and C18 molecules constituted predominant forms. Strong transformants displayed certain developmental aberrations, such as stunted growth and chlorotic leaves and stems. These negative effects were associated with an accumulation of fatty alcohols, suggesting that an adequate balance between formation and esterification of fatty alcohols is crucial for a high wax ester production. The results show that wax ester engineering in transgenic plants is feasible, and suggest that higher yields may become achieved in the near future.


Subject(s)
Acyltransferases/metabolism , Aldehyde Oxidoreductases/metabolism , Esters/metabolism , Gene Fusion/physiology , Nicotiana/metabolism , Plants, Genetically Modified/metabolism , Waxes/metabolism , Acyltransferases/genetics , Aldehyde Oxidoreductases/genetics , Phenotype , Plant Leaves/genetics , Plant Leaves/metabolism , Plants, Genetically Modified/genetics , Plants, Genetically Modified/growth & development , Nicotiana/genetics , Nicotiana/growth & development
4.
J Biol Chem ; 288(17): 11718-30, 2013 Apr 26.
Article in English | MEDLINE | ID: mdl-23439648

ABSTRACT

Neisseria meningitidis (Nm) is a leading cause of bacterial meningitis and sepsis. Crucial virulence determinants of pathogenic Nm strains are the polysaccharide capsules that support invasion by hindering complement attack. In NmW-135 and NmY the capsules are built from the repeating units (→ 6)-α-D-Gal-(1 → 4)-α-Neu5Ac-(2 →)n and (→ 6)-α-D-Glc-(1 → 4)-α-Neu5Ac-(2 →)n, respectively. These unusual heteropolymers represent unique examples of a conjugation between sialic acid and hexosyl-sugars in a polymer chain. Moreover, despite the various catalytic strategies needed for sialic acid and hexose transfer, single enzymes (SiaDW-135/Y) have been identified to form these heteropolymers. Here we used SiaDW-135 as a model system to delineate structure-function relationships. In size exclusion chromatography active SiaDW-135 migrated as a monomer. Fold recognition programs suggested two separate glycosyltransferase domains, both containing a GT-B-fold. Based on conserved motifs predicted folds could be classified as a hexosyl- and sialyltransferase. To analyze enzyme properties and interplay of the two identified glycosyltransferase domains, saturation transfer difference NMR and mutational studies were carried out. Simultaneous and independent binding of UDP-Gal and CMP-Sia was seen in the absence of an acceptor as well as when the catalytic cycle was allowed to proceed. Enzyme variants with only one functionality were generated by site-directed mutagenesis and shown to complement each other in trans when combined in an in vitro test system. Together the data strongly suggests that SiaDW-135 has evolved by fusion of two independent ancestral genes encoding sialyl- and galactosyltransferase activity.


Subject(s)
Bacterial Capsules/metabolism , Bacterial Proteins/metabolism , Evolution, Molecular , Neisseria meningitidis, Serogroup W-135/enzymology , Polysaccharides, Bacterial/biosynthesis , Sialyltransferases/metabolism , Bacterial Capsules/chemistry , Bacterial Capsules/genetics , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Gene Fusion/physiology , Humans , Meningitis, Meningococcal/enzymology , Meningitis, Meningococcal/genetics , Meningitis, Meningococcal/pathology , Mutagenesis, Site-Directed , Neisseria meningitidis, Serogroup W-135/genetics , Neisseria meningitidis, Serogroup W-135/pathogenicity , Polysaccharides, Bacterial/chemistry , Polysaccharides, Bacterial/genetics , Protein Structure, Tertiary , Sepsis/enzymology , Sepsis/genetics , Sepsis/pathology , Sialyltransferases/chemistry , Sialyltransferases/genetics , Uridine Diphosphate Galactose/chemistry , Uridine Diphosphate Galactose/genetics , Uridine Diphosphate Galactose/metabolism
5.
Blood ; 119(26): 6187-97, 2012 Jun 28.
Article in English | MEDLINE | ID: mdl-22493298

ABSTRACT

Chromosomal aberrations are an important consequence of genotoxic exposure and contribute to pathogenesis and progression of several malignancies. We investigated the susceptibility to chromosomal aberrations in chronic myelogenous leukemia (CML) progenitors after exposure to ionizing radiation. In normal progenitors, ionizing radiation induced both stable and unstable chromosomal lesions, but only stable aberrations persisted after multiple divisions. In contrast, radiation of chronic phase CML progenitors resulted in enhanced generation of unstable lesions that persisted after multiple divisions. CML progenitors demonstrated active cell cycle checkpoints and increased nonhomologous end joining DNA repair, suggesting that persistence of unstable aberrations was the result of continued generation of these lesions. CML progenitors demonstrated enhanced susceptibility to repeated cycles of chromosome damage, repair, and damage through a breakage-fusion-bridge mechanism. Perpetuation of breakage-fusion-bridge cycles in CML progenitors was mediated by classic nonhomologous end joining repair. These studies reveal a previously unrecognized mechanism of chromosomal instability in leukemia progenitors because of continued generation of unstable chromosomal lesions through repeated cycles of breakage and repair of such lesions.


Subject(s)
Chromosomal Instability/genetics , Chromosome Breakage , DNA End-Joining Repair/physiology , Gene Fusion/physiology , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/pathology , Neoplastic Stem Cells/metabolism , Antigens, CD34/metabolism , Cell Cycle Checkpoints/genetics , Cell Cycle Checkpoints/physiology , Cell Cycle Checkpoints/radiation effects , Cell Line, Tumor , Chromosomal Instability/radiation effects , Chromosome Breakage/radiation effects , DNA Damage/physiology , DNA End-Joining Repair/genetics , DNA End-Joining Repair/radiation effects , Gene Fusion/radiation effects , Humans , In Situ Hybridization, Fluorescence , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/genetics , Models, Biological , Neoplastic Stem Cells/radiation effects , Radiation, Ionizing , Recurrence
7.
J Cancer Res Clin Oncol ; 147(2): 323-337, 2021 Feb.
Article in English | MEDLINE | ID: mdl-33387037

ABSTRACT

The incidence of papillary thyroid cancer (PTC), the major type of thyroid cancer, is increasing rapidly around the world, and its pathogenesis is still unclear. There is poor prognosis for PTC involved in rapidly progressive tumors and resistance to radioiodine therapy. Kinase gene fusions have been discovered to be present in a wide variety of malignant tumors, and an increasing number of novel types have been detected in PTC, especially progressive tumors. As a tumor-driving event, kinase fusions are constitutively activated or overexpress their kinase function, conferring oncogenic potential, and their frequency is second only to BRAFV600E mutation in PTC. Diverse forms of kinase fusions have been observed and are associated with specific pathological features of PTC (usually at an advanced stage), and clinical trials of therapeutic strategies targeting kinase gene fusions are feasible for radioiodine-resistant PTC. This review summarizes the roles of kinase gene fusions in PTC and the value of clinical therapy of targeting fusions in progressive or refractory PTC, and discusses the future perspectives and challenges related to kinase gene fusions in PTC patients.


Subject(s)
Gene Fusion , Protein Kinases/genetics , Thyroid Cancer, Papillary/genetics , Thyroid Neoplasms/genetics , Anaplastic Lymphoma Kinase/genetics , Gene Fusion/drug effects , Gene Fusion/physiology , Humans , Protein Kinase Inhibitors/therapeutic use , Proto-Oncogene Proteins B-raf/genetics , Proto-Oncogene Proteins c-ret/genetics , Receptor, trkA/genetics , Thyroid Cancer, Papillary/drug therapy , Thyroid Neoplasms/drug therapy
8.
J Neuropathol Exp Neurol ; 80(9): 821-829, 2021 09 27.
Article in English | MEDLINE | ID: mdl-34363682

ABSTRACT

Polymorphous low-grade neuroepithelial tumor of the young (PLNTY) is a recently described epileptogenic tumor characterized by oligodendroglioma-like components, aberrant CD34 expression, and frequent mitogen-activated protein kinase (MAPK) pathway activation. We molecularly profiled 13 cases with diagnostic histopathological features of PLNTY (10 female; median age, 16 years; range, 5-52). Patients frequently presented with seizures (9 of 12 with available history) and temporal lobe tumors (9 of 13). MAPK pathway activating alterations were identified in all 13 cases. Fusions were present in the 7 youngest patients: FGFR2-CTNNA3 (n = 2), FGFR2-KIAA1598 (FGFR2-SHTN1) (n = 1), FGFR2-INA (n = 1), FGFR2-MPRIP (n = 1), QKI-NTRK2 (n = 1), and KIAA1549-BRAF (n = 1). BRAF V600E mutation was present in 6 patients (17 years or older). Two fusion-positive cases additionally harbored TP53/RB1 abnormalities suggesting biallelic inactivation. Copy number changes predominantly involving whole chromosomes were observed in all 10 evaluated cases, with losses of chromosome 10q occurring with FGFR2-KIAA1598 (SHTN1)/CTNNA3 fusions. The KIAA1549-BRAF and QKI-NTRK2 fusions were associated respectively with a 7q34 deletion and 9q21 duplication. This study shows that despite its name, PLNTY also occurs in older adults, who frequently show BRAF V600E mutation. It also expands the spectrum of the MAPK pathway activating alterations associated with PLNTY and demonstrates recurrent chromosomal copy number changes consistent with chromosomal instability.


Subject(s)
Membrane Glycoproteins/metabolism , Mitogen-Activated Protein Kinase Kinases/metabolism , Neoplasms, Neuroepithelial/metabolism , Receptor, trkB/metabolism , Seizures/metabolism , Adult , Aneuploidy , Chromosomes, Human, Pair 9/metabolism , Female , Gene Fusion/physiology , Humans , Recurrence , Seizures/genetics , Transcription Factors/metabolism
9.
Virchows Arch ; 479(4): 795-802, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34089379

ABSTRACT

Aneurysmal (ABC) and simple bone cysts (SBC) have been traditionally distinguished by radiological and histopathological features. However, there is some radiological and histopathological overlap between ABC and SBC. ABC is characterised by USP6 fusions while, recently, NFATC2 fusions have been found in a large proportion of SBC. Identifying these fusions may assist in confirming the diagnosis of either ABC or SBC. To elaborate the potential benefit of molecular testing, we report a prospective series of 19 consecutive bone cysts with comprehensive radiological, histopathological and molecular diagnostics. Integrating radiological, histopathological and molecular findings, 11 cysts were diagnosed as SBC and 8 as ABC. Radiologically, 6 of 11 SBC and 6 of 8 ABC were diagnosed as ABC. Fibrin-like collagen deposits were identified in 8 of 11 (73%) SBC and 3 of 8 (38%) ABC. Nodular fasciitis-like areas were identified in 6 of 8 (75%) ABC and in 7 of 11 (64%) SBC. A USP6 fusion was identified in all 8 ABC, including a novel RBM5-USP6 fusion. An NFATC2 fusion was found in 7 of 11 SBC (FUS-NFATC2 fusion in 5 and EWSR1-NFATC2 in 2 cases). There is radiological and histopathological overlap between SBC and ABC in a significant proportion of cases. A diagnosis of ABC is frequently suggested radiologically in SBC, and fibrin-like deposits, thought to be specific for SBC, may be found in some ABC. Molecular testing may significantly improve diagnostic accuracy in bone cysts.


Subject(s)
Bone Cysts, Aneurysmal/diagnosis , Bone Cysts/diagnosis , Adolescent , Adult , Bone Cysts/metabolism , Bone Cysts, Aneurysmal/metabolism , Cell Cycle Proteins/metabolism , Child , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Fasciitis/pathology , Female , Gene Fusion/physiology , Humans , In Situ Hybridization, Fluorescence/methods , Male , Middle Aged , NFATC Transcription Factors/genetics , NFATC Transcription Factors/metabolism , Pathology, Molecular/methods , Promoter Regions, Genetic/genetics , Prospective Studies , RNA-Binding Proteins/metabolism , Tumor Suppressor Proteins/metabolism , Ubiquitin Thiolesterase/genetics , Ubiquitin Thiolesterase/metabolism
10.
Wei Sheng Wu Xue Bao ; 50(4): 517-23, 2010 Apr.
Article in Zh | MEDLINE | ID: mdl-20560356

ABSTRACT

OBJECTIVE: To construct prokaryotic fusion gene expression vector pET-30a/ltB-porB, express the recombinant fusion protein LTB-PorB and analyze the immunocompetence of the recombinant fusion protein in female BALB/c mice through intranasally immunization. METHODS: B subunit of Escherichia coli heat-labile enterotoxin (LTB) and Neisseria gonorrhoeae Porin B (PorB) fusion gene, LTB gene and PorB gene were cloned into prokaryotic vector pET-30a. The recombinants were identified by Polymerase Chain Reaction (PCR), enzyme digestion and DNA sequencing, and then expressed efficiently in Escherichia coli BL21 in the form of inclusion bodies. The renatured recombinant proteins had antigenicity, which was confirmed by Western blot. Female BALB/c mice were inoculated with renatured recombinant proteins without endotoxin through intranasally immunization at the days 0, 14, 28. Next, humoral immunoresponse and cellullar immunologic response were detected in female BALB/c mice by enzyme linked immunosorbent assay (ELISA) and methyl thiazolyl tetrazolium( MTT) colorimetric assay. RESULTS: The level of PorB specific sIgA in genital tract and IgG in serum shown upward trend along with the days post innoculation in LTB-PorB group, A450 of sIgA in LTB-PorB group was 0.66 at the day 42, which was significantly higher than controls (P < 0.01), and the titer was up to 1:1280. A450 of serum IgG in LTB-PorB group was 0.60 at the day 28, which was significantly higher than the LTB and the Solution Buffer controls (P < 0.01), and the titer was up to 1:2560. However, the IgG between LTB-PorB group and PorB control (A450 :0.57) had no significant difference (P > 0.05). Stimulation index of the splenic lymphocyte in LTB-PorB group was significantly higher than the LTB and the Solution Buffer controls (P < 0.05). But the level of IFN-gamma induced by splenic lymphocyte between LTB-PorB group and controls had no significant difference (P > 0.05). CONCLUSION: The recombinant fusion protein LTB-PorB could induce high level of humoral immunoresponse and slightly cellullar immunologic response in female BALB/c mice through intranasally immunization. For the first time to our knowledge, the mucosal adjuvant LTB could assist PorB to induce high level of mucosal immune response in the genital tract mucosa of mice.


Subject(s)
Escherichia coli/genetics , Gene Expression Regulation, Bacterial/physiology , Gene Fusion/immunology , Immunocompetence/genetics , Neisseria gonorrhoeae/genetics , Animals , Antibodies, Bacterial , Antigens, Bacterial , Enterotoxins/genetics , Escherichia coli/immunology , Escherichia coli/metabolism , Escherichia coli Proteins/genetics , Escherichia coli Proteins/immunology , Gene Fusion/physiology , Immunocompetence/immunology , Mice , Mice, Inbred BALB C , Neisseria gonorrhoeae/immunology , Neisseria gonorrhoeae/metabolism
12.
Virchows Arch ; 474(5): 619-623, 2019 May.
Article in English | MEDLINE | ID: mdl-30666415

ABSTRACT

We report the first patient (a 13-year-old girl) with a sinonasal low-grade non-intestinal-type adenocarcinoma showing aberrant CDX2 expression both within morular areas and in the tubular component and demonstrate for the first time a SYN2-PPARG gene fusion in this tumor type. The tumor arose from the nasal septum and had not spread beyond the nasal cavity.


Subject(s)
CDX2 Transcription Factor/metabolism , Nasal Cavity/pathology , PPAR gamma/metabolism , Paranasal Sinus Neoplasms/pathology , Adenocarcinoma/diagnosis , Adenocarcinoma/pathology , Adolescent , Biomarkers, Tumor/metabolism , CDX2 Transcription Factor/genetics , Female , Gene Fusion/physiology , Homeodomain Proteins/metabolism , Humans , Immunohistochemistry , Paranasal Sinus Neoplasms/diagnosis
13.
Zhong Nan Da Xue Xue Bao Yi Xue Ban ; 33(2): 110-4, 2008 Feb.
Article in Zh | MEDLINE | ID: mdl-18326904

ABSTRACT

OBJECTIVE: To construct hypoxia/radiation inducible promotor HRE1.Egr-1, and to observe its promotive effect on the expression of yCDglyTK gene in nasopharyngeal cancer HNE-1 cells and the anti-tumor effect of yCDglyTK and to lay an experimental foundation for further exploration of new gene-radio therapy of nasopharyngeal cancer. METHODS: pcDNA3.1(-)HRE1.Egr-1.yCDglyTK was constructed by gene recombination technique. Stable yCDglyTK-expressing HNE-1 cells were generated by transfecting the recombinant plasmid into the target cells with liposome. The expression of yCDglyTK was detected by Western blot in 4 groups: a normoxia group, a radiation group, a hypoxia group, and a hypoxia and radiation group. The killing effect of 5-FC in different circumstances was determined by MTT. RESULTS: The expression of yCDglyTK/5-FC gene in all the groups was significantly different(P<0.01),especially in the hypoxia and radiation group. The killing effect of 5-FC on HNE1 cells varied under different conditions, especially in the hypoxia and radiation group. CONCLUSION: Hypoxia and radiation can induce the activity of fusion promoter HRE1.Egr-1, and obviously promote the anti-tumor effect of yCDglyTK/5-FC system, suggesting that yCDglyTK may be a candidate suicide gene for gene-radio therapy of NPC.


Subject(s)
Early Growth Response Protein 1/genetics , Gene Fusion/physiology , Genetic Therapy/methods , Hypoxia-Inducible Factor 1, alpha Subunit/genetics , Nasopharyngeal Neoplasms/therapy , Flucytosine/pharmacology , Humans , Nasopharyngeal Neoplasms/genetics , Nasopharyngeal Neoplasms/radiotherapy , Response Elements/genetics , Thymidine Kinase/genetics , Thymidine Kinase/metabolism , Tumor Cells, Cultured
14.
Int J Hematol ; 106(2): 269-281, 2017 Aug.
Article in English | MEDLINE | ID: mdl-28378055

ABSTRACT

ZNF384-related fusion genes are associated with a distinct subgroup of B-cell precursor acute lymphoblastic leukemias in childhood, with a frequency of approximately 3-4%. We previously identified a novel EP300-ZNF384 fusion gene. Patients with the ZNF384-related fusion gene exhibit a hematopoietic stem cell (HSC) gene expression signature and characteristic immunophenotype with negative or low expression of CD10 and aberrant expression of myeloid antigens, such as CD33 and CD13. However, the molecular basis of this pathogenesis remains completely unknown. In the present study, we examined the biological effects of EP300-ZNF384 expression induced by retrovirus-mediated gene transduction in an REH B-cell precursor acute lymphoblastic leukemia cell line, and observed the acquisition of the HSC gene expression signature and an up-regulation of GATA3 gene expression, as assessed by microarray analysis. In contrast, the gene expression profile induced by wild-type ZNF384 in REH cells was significantly different from that by EP300-ZNF384 expression. Together with the results of reporter assays, which revealed the enhancement of GATA3-promoter activity by EP300-ZNF384 expression, these findings suggest that EP300-ZNF384 mediates GATA3 gene expression and may be involved in the acquisition of the HSC gene expression signature and characteristic immunophenotype in B-cell precursor acute lymphoblastic leukemia cells.


Subject(s)
E1A-Associated p300 Protein/genetics , GATA3 Transcription Factor/genetics , Gene Expression Regulation, Developmental/genetics , Gene Expression/genetics , Gene Fusion/genetics , Hematopoietic Stem Cells , Leukemia, B-Cell/genetics , Precursor Cell Lymphoblastic Leukemia-Lymphoma/genetics , Trans-Activators/genetics , Up-Regulation/genetics , Cell Line, Tumor , Child , E1A-Associated p300 Protein/physiology , Gene Fusion/physiology , Humans , Leukemia, B-Cell/immunology , Precursor Cell Lymphoblastic Leukemia-Lymphoma/immunology , Trans-Activators/physiology
15.
BMC Cancer ; 6: 236, 2006 Oct 04.
Article in English | MEDLINE | ID: mdl-17020613

ABSTRACT

BACKGROUND: The Wnt signaling pathway is activated by mutations in the APC and beta-catenin genes in many types of human cancer. beta-catenin is stabilized by these mutations and activates transcription in part by acting as a bridge between Tcf/LEF proteins and the HD2 domain of the BCL9 coactivator. We have previously described oncolytic adenoviruses with binding sites for Tcf/LEF transcription factors inserted into the early viral promoters. These viruses replicate selectively in cells with activation of the Wnt pathway. To increase the activity of these viruses we have fused the viral transactivator E1A to the BCL9 HD2 domain. METHODS: Luciferase assays, co-immunoprecipitation and Western blotting, immunofluorescent cell staining and cytopathic effect assays were used to characterize the E1A-HD2 fusion protein and virus in vitro. Growth curves of subcutaneous SW620 colon cancer xenografts were used to characterize the virus in vivo. RESULTS: The E1A-HD2 fusion protein binds to beta-catenin in vivo and activates a Tcf-regulated luciferase reporter better than wild-type E1A in cells with activated Wnt signaling. Expression of the E1A-HD2 protein promotes nuclear import of beta-catenin, mediated by the strong nuclear localization signal in E1A. Tcf-regulated viruses expressing the fusion protein show increased expression of viral proteins and a five-fold increase in cytopathic effect (CPE) in colorectal cancer cell lines. There was no change in viral protein expression or CPE in HeLa cells, indicating that E1A-HD2 viruses retain selectivity for cells with activation of the Wnt signaling pathway. Despite increasing the cytopathic effect of the virus in vitro, fusion of the HD2 domain to E1A did not increase the burst size of the virus in vitro or the anti-tumor effect of the virus in an SW620 xenograft model in vivo. CONCLUSION: Despite an increase in the nuclear pool of beta-catenin, the effects on viral activity in colon cancer cells were small, suggesting that factors acting downstream of beta-catenin are limiting for viral replication and toxicity in these cells. The approach of fusing E1A to a protein domain implicated in oncogenic signaling could be used to selectively increase the activity of oncolytic viruses targeting several other pathways defective in cancer.


Subject(s)
Adenovirus E1A Proteins/genetics , Colonic Neoplasms/genetics , Gene Fusion/genetics , Neoplasm Proteins/genetics , Oncolytic Viruses/metabolism , Adenovirus E1A Proteins/metabolism , Animals , Cell Line, Tumor , Colonic Neoplasms/metabolism , Cytopathogenic Effect, Viral/genetics , Cytopathogenic Effect, Viral/physiology , Female , Gene Fusion/physiology , HeLa Cells , Humans , Mice , Mice, Nude , Neoplasm Proteins/metabolism , Oncolytic Viruses/genetics , Signal Transduction/physiology , Transcription Factors , Wnt Proteins/genetics , Wnt Proteins/metabolism , Xenograft Model Antitumor Assays/methods , beta Catenin/genetics , beta Catenin/metabolism
16.
PLoS One ; 11(7): e0159028, 2016.
Article in English | MEDLINE | ID: mdl-27415830

ABSTRACT

Repetitive elements (REs) comprise 40-60% of the mammalian genome and have been shown to epigenetically influence the expression of genes through the formation of fusion transcript (FTs). We previously showed that an intracisternal A particle forms an FT with the agouti gene in mice, causing obesity/type 2 diabetes. To determine the frequency of FTs genome-wide, we developed a TopHat-Fusion-based analytical pipeline to identify FTs with high specificity. We applied it to an RNA-seq dataset from the nucleus accumbens (NAc) of mice repeatedly exposed to cocaine. Cocaine was previously shown to increase the expression of certain REs in this brain region. Using this pipeline that can be applied to single- or paired-end reads, we identified 438 genes expressing 813 different FTs in the NAc. Although all types of studied repeats were present in FTs, simple sequence repeats were underrepresented. Most importantly, reverse-transcription and quantitative PCR validated the expression of selected FTs in an independent cohort of animals, which also revealed that some FTs are the prominent isoforms expressed in the NAc by some genes. In other RNA-seq datasets, developmental expression as well as tissue specificity of some FTs differed from their corresponding non-fusion counterparts. Finally, in silico analysis predicted changes in the structure of proteins encoded by some FTs, potentially resulting in gain or loss of function. Collectively, these results indicate the robustness of our pipeline in detecting these new isoforms of genes, which we believe provides a valuable tool to aid in better understanding the broad role of REs in mammalian cellular biology.


Subject(s)
Exons/genetics , Gene Fusion/genetics , Interspersed Repetitive Sequences/genetics , Sequence Analysis, RNA/methods , Animals , Cocaine/pharmacology , Exons/physiology , Gene Expression Regulation/drug effects , Gene Fusion/physiology , Interspersed Repetitive Sequences/physiology , Male , Mice , Mice, Inbred C57BL , Nucleus Accumbens/drug effects , Nucleus Accumbens/metabolism , Polymerase Chain Reaction , Sensitivity and Specificity
18.
PLoS One ; 6(11): e27302, 2011.
Article in English | MEDLINE | ID: mdl-22096548

ABSTRACT

Regulation of protein activity is central to the complexity of life. The ability to regulate protein activity through exogenously added molecules has biotechnological/biomedical applications and offers tools for basic science. Such regulation can be achieved by establishing a means to modulate the specific activity of the protein (i.e. allostery). An alternative strategy for intracellular regulation of protein activity is to control the amount of protein through effects on its production, accumulation, and degradation. We have previously demonstrated that the non-homologous recombination of the genes encoding maltose binding protein (MBP) and TEM1 ß-lactamase (BLA) can result in fusion proteins in which ß-lactamase enzyme activity is allosterically regulated by maltose. Here, through use of a two-tiered genetic selection scheme, we demonstrate that such recombination can result in genes that confer maltose-dependent resistance to ß-lactam even though they do not encode allosteric enzymes. These 'phenotypic switch' genes encode fusion proteins whose accumulation is a result of a specific interaction with maltose. Phenotypic switches represent an important class of proteins for basic science and biotechnological applications in vivo.


Subject(s)
Protein Engineering/methods , Recombination, Genetic/genetics , Allosteric Regulation , Enzyme Activation/drug effects , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Fusion/genetics , Gene Fusion/physiology , Maltose/pharmacology , Maltose-Binding Proteins/genetics , Maltose-Binding Proteins/metabolism , beta-Lactamases/genetics , beta-Lactamases/metabolism
19.
Bull Cancer ; 98(12): 1403-18, 2011 Dec.
Article in French | MEDLINE | ID: mdl-22157699

ABSTRACT

Oncogenesis is correlated with the occurrence of multiple genomic events allowing cancer cells to acquire new properties, including the capacity of survival and proliferation with down regulated control signals. Among those genomic events, the study of recurrent translocations, particularly common in oncohematology, has allowed for a better understanding of leucemogenesis and lymphomagenesis mechanisms. These translocations are classically distinguished depending on their physiopathologic consequences. It may encode for a fusion gene leading to a chimeric protein, which exhibits a new activity or an aberrant one, corresponding in most cases to the constitutive activation of a proto-oncogene. In other cases, these translocations may cause abnormal expression of a proto-oncogene with a regular structure by a transcriptional deregulation. Beyond this highlighting recurrent translocations and understanding better the physiopathologic consequences of these chromosomal modifications has a real impact on patients. These cytogenetic anomalies represent an essential diagnostic tool for some hematologies; and pave the way for a better evaluation of the prognosis and thus, a better adaptation of the therapeutic strategy. They also contributed to improve survival with the development of targeted therapies. Finally, thanks to cytogenetic techniques combined to molecular biology techniques, cytogenetic aberrations can be used as a marker of response, which allowed a monitoring of residual disease.


Subject(s)
Leukemia/genetics , Lymphoma/genetics , Translocation, Genetic/genetics , Gene Expression/genetics , Gene Fusion/physiology , Humans , Leukemia/diagnosis , Leukemia/physiopathology , Leukemia/therapy , Lymphoma/diagnosis , Lymphoma/physiopathology , Lymphoma/therapy , Proto-Oncogene Mas , Proto-Oncogenes/physiology , Recombinant Fusion Proteins/genetics , Transcriptional Activation , Translocation, Genetic/physiology
20.
FEBS Lett ; 585(17): 2627-34, 2011 Sep 02.
Article in English | MEDLINE | ID: mdl-21827754

ABSTRACT

Silica glass formation in diatoms requires the biosynthesis of unusual, very long chain polyamines (LCPA) composed of iterated aminopropyl units. Diatoms processively synthesize LCPA, N-methylate the amine groups and transfer concatenated, N-dimethylated aminopropyl groups to silaffin proteins. Here I show that diatom genomes possess signal peptide-containing gene fusions of bacterially-derived polyamine biosynthetic enzymes S-adenosylmethionine decarboxylase (AdoMetDC) and an aminopropyltransferase, sometimes fused to a eukaryotic histone N-methyltransferase domain, that potentially synthesize and N-methylate LCPA. Fusions of similar, alternatively configured domains but with a catalytically dead AdoMetDC and in one case a Tudor domain, may N-dimethylate and transfer multiple aminopropyl unit polyamines onto silaffin proteins.


Subject(s)
Bacterial Proteins/chemistry , Diatoms/enzymology , Diatoms/metabolism , Gene Fusion/physiology , Polyamines/metabolism , Adenosylmethionine Decarboxylase/chemistry , Adenosylmethionine Decarboxylase/classification , Adenosylmethionine Decarboxylase/genetics , Adenosylmethionine Decarboxylase/metabolism , Bacterial Proteins/classification , Bacterial Proteins/genetics , Gene Fusion/genetics , Histone Methyltransferases , Histone-Lysine N-Methyltransferase/chemistry , Histone-Lysine N-Methyltransferase/classification , Histone-Lysine N-Methyltransferase/genetics , Histone-Lysine N-Methyltransferase/metabolism , Phylogeny , Polyamines/chemistry , Spermidine Synthase/chemistry , Spermidine Synthase/classification , Spermidine Synthase/genetics , Spermidine Synthase/metabolism
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