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1.
Int J Mol Sci ; 22(3)2021 Feb 02.
Article in English | MEDLINE | ID: mdl-33540748

ABSTRACT

Tuberculosis (TB) remains one of the major health concerns worldwide. Mycobacterium tuberculosis (Mtb), the causative agent of TB, can flexibly change its metabolic processes during different life stages. Regulation of key metabolic enzyme activities by intracellular conditions, allosteric inhibition or feedback control can effectively contribute to Mtb survival under different conditions. Phosphofructokinase (Pfk) is one of the key enzymes regulating glycolysis. Mtb encodes two Pfk isoenzymes, Pfk A/Rv3010c and Pfk B/Rv2029c, which are differently expressed upon transition to the hypoxia-induced non-replicating state of the bacteria. While pfkB gene and protein expression are upregulated under hypoxic conditions, Pfk A levels decrease. Here, we present biochemical characterization of both Pfk isoenzymes, revealing that Pfk A and Pfk B display different kinetic properties. Although the glycolytic activity of Pfk A is higher than that of Pfk B, it is markedly inhibited by an excess of both substrates (fructose-6-phosphate and ATP), reaction products (fructose-1,6-bisphosphate and ADP) and common metabolic allosteric regulators. In contrast, synthesis of fructose-1,6-bisphosphatase catalyzed by Pfk B is not regulated by higher levels of substrates, and metabolites. Importantly, we found that only Pfk B can catalyze the reverse gluconeogenic reaction. Pfk B thus can support glycolysis under conditions inhibiting Pfk A function.


Subject(s)
Bacterial Proteins/metabolism , Mycobacterium tuberculosis/enzymology , Phosphofructokinases/metabolism , Adenosine Diphosphate/metabolism , Adenosine Diphosphate/pharmacology , Adenosine Triphosphate/metabolism , Adenosine Triphosphate/pharmacology , Allosteric Regulation , Bacterial Proteins/antagonists & inhibitors , Catalysis , Enzyme Induction , Feedback, Physiological , Fructosediphosphates/biosynthesis , Fructosediphosphates/pharmacology , Fructosephosphates/metabolism , Fructosephosphates/pharmacology , Gluconeogenesis , Glycolysis , Hexosephosphates/metabolism , Isoenzymes/antagonists & inhibitors , Isoenzymes/metabolism , Kinetics , L-Lactate Dehydrogenase/metabolism , Mycobacterium tuberculosis/drug effects , Oxygen/pharmacology , Phosphofructokinases/antagonists & inhibitors , Pyruvate Kinase/metabolism , Recombinant Proteins/metabolism , Substrate Specificity
2.
Mol Microbiol ; 112(4): 1178-1198, 2019 10.
Article in English | MEDLINE | ID: mdl-31332863

ABSTRACT

Myxococcus xanthus is a model bacterium to study social behavior. At the cellular level, the different social behaviors of M. xanthus involve extensive cell-cell contacts. Here, we used bioinformatics, genetics, heterologous expression and biochemical experiments to identify and characterize the key enzymes in M. xanthus implicated in O-antigen and lipopolysaccharide (LPS) biosynthesis and examined the role of LPS O-antigen in M. xanthus social behaviors. We identified WbaPMx (MXAN_2922) as the polyisoprenyl-phosphate hexose-1-phosphate transferase responsible for priming O-antigen synthesis. In heterologous expression experiments, WbaPMx complemented a Salmonella enterica mutant lacking the endogenous WbaP that primes O-antigen synthesis, indicating that WbaPMx transfers galactose-1-P to undecaprenyl-phosphate. We also identified WaaLMx (MXAN_2919), as the O-antigen ligase that joins O-antigen to lipid A-core. Our data also support the previous suggestion that WzmMx (MXAN_4622) and WztMx (MXAN_4623) form the Wzm/Wzt ABC transporter. We show that mutations that block different steps in LPS O-antigen synthesis can cause pleiotropic phenotypes. Also, using a wbaPMx deletion mutant, we revisited the role of LPS O-antigen and demonstrate that it is important for gliding motility, conditionally important for type IV pili-dependent motility and required to complete the developmental program leading to the formation of spore-filled fruiting bodies.


Subject(s)
Lipopolysaccharides/biosynthesis , Myxococcus xanthus/metabolism , O Antigens/biosynthesis , ATP-Binding Cassette Transporters/metabolism , Bacterial Proteins/metabolism , Gene Expression Regulation, Bacterial/genetics , Genes, Bacterial/genetics , Hexosephosphates/metabolism , Ligases/metabolism , Lipopolysaccharides/metabolism , Molecular Motor Proteins/metabolism , Mutation , Myxococcus xanthus/genetics , O Antigens/metabolism , Phenotype , Polyisoprenyl Phosphates/metabolism
3.
Neurochem Res ; 45(11): 2529-2552, 2020 Nov.
Article in English | MEDLINE | ID: mdl-32815045

ABSTRACT

The isoform of glucose-6-phosphatase in liver, G6PC1, has a major role in whole-body glucose homeostasis, whereas G6PC3 is widely distributed among organs but has poorly-understood functions. A recent, elegant analysis of neutrophil dysfunction in G6PC3-deficient patients revealed G6PC3 is a neutrophil metabolite repair enzyme that hydrolyzes 1,5-anhydroglucitol-6-phosphate, a toxic metabolite derived from a glucose analog present in food. These patients exhibit a spectrum of phenotypic characteristics and some have learning disabilities, revealing a potential linkage between cognitive processes and G6PC3 activity. Previously-debated and discounted functions for brain G6PC3 include causing an ATP-consuming futile cycle that interferes with metabolic brain imaging assays and a nutritional role involving astrocyte-neuron glucose-lactate trafficking. Detailed analysis of the anhydroglucitol literature reveals that it competes with glucose for transport into brain, is present in human cerebrospinal fluid, and is phosphorylated by hexokinase. Anhydroglucitol-6-phosphate is present in rodent brain and other organs where its accumulation can inhibit hexokinase by competition with ATP. Calculated hexokinase inhibition indicates that energetics of brain and erythrocytes would be more adversely affected by anhydroglucitol-6-phosphate accumulation than heart. These findings strongly support the paradigm-shifting hypothesis that brain G6PC3 removes a toxic metabolite, thereby maintaining brain glucose metabolism- and ATP-dependent functions, including cognitive processes.


Subject(s)
Brain/metabolism , Glucose-6-Phosphatase/metabolism , Hexosephosphates/metabolism , Neuroprotection/physiology , Animals , Deoxyglucose/metabolism , Enzyme Inhibitors/metabolism , Hexokinase/antagonists & inhibitors , Hexokinase/metabolism , Humans , Phosphorylation , Protein Isoforms/metabolism
4.
Planta ; 249(5): 1319-1336, 2019 May.
Article in English | MEDLINE | ID: mdl-30627889

ABSTRACT

MAIN CONCLUSION: Futile cycling between free sugars and hexose phosphates occurring under phosphate deficiency could be involved in the maintenance of a threshold level of free cellular phosphate to preserve respiratory metabolism. We studied the metabolic response of potato cell cultures growing in Pi sufficient (2.5Ā mM, +Pi) or deficient (125Ā ĀµM, -Pi) conditions. Under Pi deficiency, cellular growth was severely affected, however -Pi cells were able to maintain a low but steady level of free Pi. We surveyed the activities of 33 primary metabolic enzymes during the course of a 12Ā days Pi deficiency period. Our results show that many of these enzymes had higher specific activity in -Pi cells. Among these, we found typical markers of Pi deficiency such as phosphoenolpyruvate phosphatase and phosphoenolpyruvate carboxylase as well as enzymes involved in the biosynthesis of organic acids. Intriguingly, several ATP-consuming enzymes such as hexokinase (HK) and phosphofructokinase also displayed increased activity in -Pi condition. For HK, this was associated with an increase in the steady state of a specific HK polypeptide. Quantification of glycolytic intermediates showed a pronounced decrease in phosphate esters under Pi deficiency. Adenylate levels also decreased in -Pi cells, but the Adenylate Energy Charge was not affected by the treatment. To investigate the significance of HK induction under low Pi, [U-14C]-glucose tracer studies were conducted. We found in vivo evidence of futile cycling between pools of hexose phosphates and free sugars under Pi deficiency. Our study suggests that the futile cycling between hexose phosphates and free sugars which is active under +Pi conditions is sustained under Pi deficiency. The possibility that this process represents a metabolic adaptation to Pi deficiency is discussed with respect to Pi homeostasis in Pi-deficient conditions.


Subject(s)
Hexosephosphates/metabolism , Phosphates/deficiency , Solanum tuberosum/metabolism , Sugars/metabolism , Cell Culture Techniques , Hexokinase/metabolism , Solanum tuberosum/cytology
5.
J Struct Biol ; 203(2): 109-119, 2018 08.
Article in English | MEDLINE | ID: mdl-29605571

ABSTRACT

Sorbitol-6-phosphate 2-dehydrogenases (S6PDH) catalyze the interconversion of d-sorbitol 6-phosphate to d-fructose 6-phosphate. In the plant pathogen Erwinia amylovora the S6PDH SrlD is used by the bacterium to utilize sorbitol, which is used for carbohydrate transport in the host plants belonging to the Amygdaloideae subfamily (e.g., apple, pear, and quince). We have determined the crystal structure of S6PDH SrlD at 1.84Ć¢Ā€ĀÆƅ resolution, which is the first structure of an EC 1.1.1.140 enzyme. Kinetic data show that SrlD is much faster at oxidizing d-sorbitol 6-phosphate than in reducing d-fructose 6-phosphate, however, equilibrium analysis revealed that only part of the d-sorbitol 6-phosphate present in the in vitro environment is converted into d-fructose 6-phosphate. The comparison of the structures of SrlD and Rhodobacter sphaeroides sorbitol dehydrogenase showed that the tetrameric quaternary structure, the catalytic residues and a conserved aspartate residue that confers specificity for NAD+ over NADP+ are preserved. Analysis of the SrlD cofactor and substrate binding sites identified residues important for the formation of the complex with cofactor and substrate and in particular the role of Lys42 in selectivity towards the phospho-substrate. The comparison of SrlD backbone with the backbone of 302 short-chain dehydrogenases/reductases showed the conservation of the protein core and identified the variable parts. The SrlD sequence was compared with 500 S6PDH sequences selected by homology revealing that the C-terminal part is more conserved than the N-terminal, the consensus of the catalytic tetrad (Y[SN]AGXA) and a not previously described consensus for the NAD(H) binding.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Erwinia amylovora/enzymology , Erwinia amylovora/metabolism , Sugar Alcohol Dehydrogenases/chemistry , Sugar Alcohol Dehydrogenases/metabolism , Bacterial Proteins/genetics , Erwinia amylovora/genetics , Hexosephosphates/metabolism , Kinetics , Rosaceae/microbiology , Sugar Alcohol Dehydrogenases/genetics , Tomography, X-Ray Computed
6.
Plant Cell Physiol ; 58(1): 145-155, 2017 01 01.
Article in English | MEDLINE | ID: mdl-28011870

ABSTRACT

Glucitol, also known as sorbitol, is a major photosynthetic product in plants from the Rosaceae family. This sugar alcohol is synthesized from glucose-6-phosphate by the combined activities of aldose-6-phosphate reductase (Ald6PRase) and glucitol-6-phosphatase. In this work we show the purification and characterization of recombinant Ald6PRase from peach leaves. The recombinant enzyme was inhibited by glucose-1-phosphate, fructose-6-phosphate, fructose-1,6-bisphosphate and orthophosphate. Oxidizing agents irreversibly inhibited the enzyme and produced protein precipitation. Enzyme thiolation with oxidized glutathione protected the enzyme from insolubilization caused by diamide, while incubation with NADP+ (one of the substrates) completely prevented enzyme precipitation. Our results suggest that Ald6PRase is finely regulated to control carbon partitioning in peach leaves.


Subject(s)
Aldehyde Reductase/metabolism , Plant Leaves/enzymology , Plant Proteins/metabolism , Prunus domestica/enzymology , Aldehyde Reductase/antagonists & inhibitors , Aldehyde Reductase/genetics , Fructosediphosphates/metabolism , Fructosediphosphates/pharmacology , Fructosephosphates/metabolism , Fructosephosphates/pharmacology , Glucosephosphates/metabolism , Glucosephosphates/pharmacology , Glutathione Disulfide/metabolism , Hexosephosphates/metabolism , Hexosephosphates/pharmacology , Immunoblotting , Kinetics , Models, Biological , NADP/metabolism , Oxidants/metabolism , Oxidants/pharmacology , Phosphates/metabolism , Phosphates/pharmacology , Phylogeny , Plant Leaves/genetics , Plant Proteins/classification , Plant Proteins/genetics , Prunus domestica/genetics , Recombinant Proteins/metabolism , Substrate Specificity , Sulfhydryl Compounds/metabolism
7.
Food Microbiol ; 62: 178-187, 2017 Apr.
Article in English | MEDLINE | ID: mdl-27889146

ABSTRACT

Residual lactose and galactose in fermented dairy foods leads to several industrial and health concerns. There is very little information pertaining to manufacture of fermented dairy foods that are low in lactose and galactose. In the present study, comparative genomic survey demonstrated the constant presence of chromosome-encoded tagatose-6-phosphate (T6P) pathway in Lactobacillus casei group. Lactose/galactose utilization tests and Ɵ-galactosidase assay suggest that PTSGal system, PTSLac system and T6P pathway are major contributors for lactose/galactose catabolism in this group of organisms. In addition, it was found than lactose catabolism by Lb. casei group accumulated very limited galactose in the MRS-lactose medium and in reconstituted skim milk, whereas Streptococcus thermophilus and Lb. delbrueckii subsp. bulgaricus (Lb. bulgaricus) strains secreted high amount of galactose extracellularly. Moreover, co-culturing Lb. casei group with Str. thermophilus showed significant reduction in galactose content, while co-culturing Lb. casei group with Lb. bulgaricus showed significant reduction in lactose content but significant increase in galactose content in milk. Overall, the present study highlighted the potential of Lb. casei group for reducing galactose accumulation in fermented milks due to its species-specific T6P pathway.


Subject(s)
Cultured Milk Products/microbiology , Galactose/metabolism , Hexosephosphates/metabolism , Lacticaseibacillus casei/metabolism , Milk/chemistry , Animals , Cultured Milk Products/analysis , Galactose/analysis , Galactose/biosynthesis , Genomics , Hexosephosphates/genetics , Lacticaseibacillus casei/enzymology , Lactose/analysis , Lactose/metabolism , Milk/microbiology , Species Specificity , Streptococcus thermophilus/metabolism , beta-Galactosidase/genetics , beta-Galactosidase/metabolism
8.
Appl Environ Microbiol ; 81(24): 8315-29, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26407889

ABSTRACT

Bacterial microcompartments (BMCs) are proteinaceous organelles encapsulating enzymes that catalyze sequential reactions of metabolic pathways. BMCs are phylogenetically widespread; however, only a few BMCs have been experimentally characterized. Among them are the carboxysomes and the propanediol- and ethanolamine-utilizing microcompartments, which play diverse metabolic and ecological roles. The substrate of a BMC is defined by its signature enzyme. In catabolic BMCs, this enzyme typically generates an aldehyde. Recently, it was shown that the most prevalent signature enzymes encoded by BMC loci are glycyl radical enzymes, yet little is known about the function of these BMCs. Here we characterize the glycyl radical enzyme-associated microcompartment (GRM) loci using a combination of bioinformatic analyses and active-site and structural modeling to show that the GRMs comprise five subtypes. We predict distinct functions for the GRMs, including the degradation of choline, propanediol, and fuculose phosphate. This is the first family of BMCs for which identification of the signature enzyme is insufficient for predicting function. The distinct GRM functions are also reflected in differences in shell composition and apparently different assembly pathways. The GRMs are the counterparts of the vitamin B12-dependent propanediol- and ethanolamine-utilizing BMCs, which are frequently associated with virulence. This study provides a comprehensive foundation for experimental investigations of the diverse roles of GRMs. Understanding this plasticity of function within a single BMC family, including characterization of differences in permeability and assembly, can inform approaches to BMC bioengineering and the design of therapeutics.


Subject(s)
Bacteria/enzymology , Bacteria/metabolism , Computational Biology/methods , Metabolic Networks and Pathways/genetics , Alcohol Oxidoreductases/genetics , Alcohol Oxidoreductases/metabolism , Aldehyde Oxidoreductases/genetics , Aldehyde Oxidoreductases/metabolism , Bacteria/genetics , Choline/metabolism , Fructose-Bisphosphate Aldolase/genetics , Fructose-Bisphosphate Aldolase/metabolism , Hexosephosphates/metabolism , Organelles/metabolism , Propylene Glycols/metabolism
9.
Planta ; 240(1): 223-38, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24817585

ABSTRACT

The sorbitol-6-phosphate dehydrogenase (S6PDH) is a key enzyme for sorbitol synthesis and plays an important role in the alleviation of salinity stress in plants. Despite the huge significance, the structure and the mode of action of this enzyme are still not known. In the present study, sequence analysis, cloning, expression, activity assays and enzyme kinetics using various substrates (glucose-6-phosphate, sorbitol-6-phosphate and mannose-6-phosphate) were performed to establish the functional role of S6PDH protein from rice (Oryza sativa). For the structural analysis of the protein, a comparative homology model was prepared on the basis of percentage sequence identity and substrate similarity using the crystal structure of human aldose reductase in complex with glucose-6-phosphate and NADP(+) (PDB ID: 2ACQ) as a template. Molecular docking was performed for studying the structural details of substrate binding and possible enzyme mechanism. The cloned sequence resulted into an active recombinant protein when expressed into a bacterial expression system. The purified recombinant protein was found to be active with glucose-6-phosphate and sorbitol-6-phosphate; however, activity against mannose-6-phosphate was not found. The K m values for glucose-6-phosphate and sorbitol-6-phosphate were found to be 15.9 Ā± 0.2 and 7.21 Ā± 0.5 mM, respectively. A molecular-level analysis of the active site of OsS6PDH provides valuable information about the enzyme mechanism and requisite enantioselectivity for its physiological substrates. Thus, the fundamental studies of structure and function of OsS6PDH could serve as the basis for the future studies of bio-catalytic applications of this enzyme.


Subject(s)
Molecular Docking Simulation , Oryza/enzymology , Protein Processing, Post-Translational , Sugar Alcohol Dehydrogenases/metabolism , Amino Acid Sequence , Base Sequence , Cloning, Molecular , Hexosephosphates/metabolism , Kinetics , Oryza/genetics , Phylogeny , Plant Proteins/chemistry , Plant Proteins/genetics , Plant Proteins/isolation & purification , Plant Proteins/metabolism , Recombinant Proteins , Sequence Alignment , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Substrate Specificity , Sugar Alcohol Dehydrogenases/chemistry , Sugar Alcohol Dehydrogenases/genetics , Sugar Alcohol Dehydrogenases/isolation & purification
10.
J Bacteriol ; 195(8): 1800-8, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23417487

ABSTRACT

The facultative human pathogen Vibrio cholerae transits between the gastrointestinal tract of its host and aquatic reservoirs. V. cholerae adapts to different situations by the timely coordinated expression of genes during its life cycle. We recently identified a subclass of genes that are induced at late stages of infection. Initial characterization demonstrated that some of these genes facilitate the transition of V. cholerae from host to environmental conditions. Among these genes are uptake systems lacking detailed characterization or correct annotation. In this study, we comprehensively investigated the function of the VCA0682-to-VCA0687 gene cluster, which was previously identified as in vivo induced. The results presented here demonstrate that the operon encompassing open reading frames VCA0685 to VCA0687 encodes an ABC transport system for hexose-6-phosphates with Km values ranging from 0.275 to 1.273 ĀµM for glucose-6P and fructose-6P, respectively. Expression of the operon is induced by the presence of hexose-6P controlled by the transcriptional activator VCA0682, representing a UhpA homolog. Finally, we provide evidence that the operon is essential for the utilization of hexose-6P as a C and P source. Thereby, a physiological role can be assigned to hexose-6P uptake, which correlates with increased fitness of V. cholerae after a transition from the host into phosphate-limiting environments.


Subject(s)
Carbon/metabolism , Gene Expression Regulation, Bacterial/physiology , Hexosephosphates/metabolism , Monosaccharide Transport Proteins/metabolism , Phosphates/metabolism , Vibrio cholerae/metabolism , Biological Transport, Active/physiology , Carbohydrate Metabolism/genetics , Carbohydrate Metabolism/physiology , DNA, Bacterial , Kinetics , Monosaccharide Transport Proteins/genetics , Mutation , Plasmids , Vibrio cholerae/genetics
11.
Am J Physiol Endocrinol Metab ; 303(2): E234-42, 2012 Jul 15.
Article in English | MEDLINE | ID: mdl-22569070

ABSTRACT

Carbohydrate response element-binding protein (ChREBP) is a transcription factor that mediates glucose signaling in mammalian liver, leading to the expression of different glycolytic and lipogenic genes, such as pyruvate kinase (L-PK) and fatty acid synthase (FAS). The current model for ChREBP activation in response to sugar phosphates holds that glucose metabolization to xylulose 5-phosphate (X-5-P) triggers the activation of protein phosphatase 2A, which dephosphorylates ChREBP and leads to its nuclear translocation and activation. However, evidence indicates that glucose 6-phosphate (G-6-P) is the most likely signal metabolite for the glucose-induced transcription of these genes. The glucose derivative that is responsible for carbohydrate-dependent gene expression remains to be identified. The difficulties in measuring G-6-P and X-5-P concentrations simultaneously and in changing them independently have hindered such identification. To discriminate between these possibilities, we adapted a liquid chromatography mass spectrometry method to identify and quantify sugar phosphates in human hepatocarcinoma cells (Hep G2) and rat hepatocytes in response to different carbon sources and in the presence/absence of a glucose-6-phosphate dehydrogenase inhibitor. We also used this method to demonstrate that these cells could not metabolize 2-deoxyglucose beyond 2-deoxyglucose-6-phosphate. The simultaneous quantification of sugar phosphates and FAS and L-PK expression levels demonstrated that both X-5-P and G-6-P play a role in the modulation of gene expression. In conclusion, this report presents for the first time a single mechanism that incorporates the effects of X-5-P and G-6-P on the enhancement of the expression of carbohydrate-responsive genes.


Subject(s)
Carbohydrate Metabolism/physiology , Gene Expression Regulation/physiology , Hexosephosphates/metabolism , Metabolomics , Pentosephosphates/metabolism , Animals , Carbohydrate Metabolism/drug effects , Cell Line , Gas Chromatography-Mass Spectrometry/methods , Gene Expression Regulation/drug effects , Glucosephosphate Dehydrogenase/antagonists & inhibitors , Glucosephosphate Dehydrogenase/metabolism , Hepatocytes/drug effects , Hepatocytes/metabolism , Humans , Rats
12.
J Exp Med ; 148(6): 1449-57, 1978 Dec 01.
Article in English | MEDLINE | ID: mdl-722242

ABSTRACT

Macrophages were obtained by peritoneal lavage from untreated mice or from mice which had received either Brewer's thioglycollate broth or a suspension of streptococcus A cell walls intraperitoneally 4 days before. 3 h after harvesting, adherent cells from untreated mice were allowed to phagocytose zymosan, formaldehyde-treated sheep erythrocytes, or latex beads. Phagocytosis was stopped after 1 h and culture was continued for up to 10 days. Phagocytosis of zymosan or sheep erythrocytes triggered the immediate release of lysosomal glycosidases, stimulated the synthesis of cellular lactate dehydrogenase, and induced the delayed production and secretion of plasminogen activator . No such changes were observed upon phagocytosis of latex. Although all three particles used were phagocytosed, only zymosan and sheep erythrocytes stimulated glucose oxidation via the hexose monophosphate shunt. Similar findings were obtained in macrophages elicited with streptococcus A cell walls after zymosan phagocytosis. Thioglycollate-elicited macrophages, however, which were already secreting lysosomal hydrolases and plasminogen activator, could not be activated further by zymosan. The results of this study show that macrophages become activated after phagocytosis of particles that stimulate the activity of their hexose monophosphate shunt. The triggering event appears to be the burst of shunt activity itself or shunt-related biochemical reactions rather than phagocytic uptake per se or particle-dependent complement activation by the alternative pathway. Once initiated, macrophage activation proceeds independently of the intracellular fate of the ingested material .


Subject(s)
Macrophages/physiology , Acetylglucosaminidase/metabolism , Animals , Culture Media , Erythrocytes , Glucuronidase/metabolism , Hexosephosphates/metabolism , L-Lactate Dehydrogenase/metabolism , Latex , Lysosomes/enzymology , Male , Mice , Microspheres , Phagocytosis , Plasminogen Activators/metabolism , Zymosan
13.
J Exp Med ; 133(6): 1356-76, 1971 Jun 01.
Article in English | MEDLINE | ID: mdl-5576335

ABSTRACT

Sensitized lymphocytes were incubated in vitro with the specific antigen Supernatants from these cultures were chromatographed on Sephadex G-100 columns. Supernatant fractions containing MIF, chemotactic factor, and lymphotoxin, but free of antigen and antibody, were incubated with normal peritoneal exudate macrophages. Macrophage adherence, phagocytosis, spreading, motility, and direct hexose monophosphate oxidation were enhanced, while protein synthesis was unaffected. Thus, antigen-stimulated lymphocytes secrete a factor or factors which enhance certain macrophage functions. Implications for models of cellular immunity and cellular hypersensitivity are discussed.


Subject(s)
Lymphocytes/immunology , Macrophages/immunology , Amino Acids/metabolism , Animals , Carbon Dioxide/metabolism , Carbon Isotopes , Cell Adhesion , Cell Migration Inhibition , Cell Movement , Chromatography, Gel , Disease Models, Animal , Glucose/metabolism , Guinea Pigs , Hexosephosphates/metabolism , Hypersensitivity, Delayed , Immunity, Cellular , In Vitro Techniques , Macrophages/metabolism , Models, Biological , Phagocytosis , Protein Biosynthesis
14.
Planta ; 231(3): 595-608, 2010 Feb.
Article in English | MEDLINE | ID: mdl-19957089

ABSTRACT

Analyses of transgenic sugarcane clones with 45-95% reduced cytosolic pyrophosphate: D-fructose-6-phosphate 1-phosphotransferase (PFP, EC 2.7.1.90) activity displayed no visual phenotypical change, but significant changes were evident in in vivo metabolite levels and fluxes during internode development. In three independent transgenic lines, sucrose concentrations increased between three- and sixfold in immature internodes, compared to the levels in the wildtype control. There was an eightfold increase in the hexose-phosphate:triose-phosphate ratio in immature internodes, a significant restriction in the triose phosphate to hexose phosphate cycle and significant increase in sucrose cycling as monitored by (13)C nuclear magnetic resonance. This suggests that an increase in the hexose-phosphate concentrations resulting from a restriction in the conversion of hexose phosphates to triose phosphates drive sucrose synthesis in the young internodes. These effects became less pronounced as the tissue matured. Decreased expression of PFP also resulted in an increase of the ATP/ADP and UTP/UDP ratios, and an increase of the total uridine nucleotide and, at a later stage, the total adenine nucleotide pool, revealing strong interactions between PPi metabolism and general energy metabolism. Finally, decreased PFP leads to a reduction of PPi levels in older internodes indicating that in these developmental stages PFP acts in the gluconeogenic direction. The lowered PPi levels might also contribute to the absence of increases in sucrose contents in the more mature tissues of transgenic sugarcane with reduced PFP activity.


Subject(s)
Down-Regulation , Hexosephosphates/metabolism , Phosphotransferases/genetics , Plant Proteins/genetics , Saccharum/metabolism , Sucrose/metabolism , Chromatography, High Pressure Liquid , Gas Chromatography-Mass Spectrometry , Nuclear Magnetic Resonance, Biomolecular , Phosphotransferases/chemistry , Phosphotransferases/metabolism , Plant Proteins/chemistry , Plant Proteins/metabolism , Plants, Genetically Modified/metabolism , Saccharum/enzymology , Saccharum/genetics
15.
Biomolecules ; 10(12)2020 12 08.
Article in English | MEDLINE | ID: mdl-33302546

ABSTRACT

Archaeal DNA polymerases from the B-family (polB) have found essential applications in biotechnology. In addition, some of their variants can accept a wide range of modified nucleotides or xenobiotic nucleotides, such as 1,5-anhydrohexitol nucleic acid (HNA), which has the unique ability to selectively cross-pair with DNA and RNA. This capacity is essential to allow the transmission of information between different chemistries of nucleic acid molecules. Variants of the archaeal polymerase from Thermococcus gorgonarius, TgoT, that can either generate HNA from DNA (TgoT_6G12) or DNA from HNA (TgoT_RT521) have been previously identified. To understand how DNA and HNA are recognized and selected by these two laboratory-evolved polymerases, we report six X-ray structures of these variants, as well as an in silico model of a ternary complex with HNA. Structural comparisons of the apo form of TgoT_6G12 together with its binary and ternary complexes with a DNA duplex highlight an ensemble of interactions and conformational changes required to promote DNA or HNA synthesis. MD simulations of the ternary complex suggest that the HNA-DNA hybrid duplex remains stable in the A-DNA helical form and help explain the presence of mutations in regions that would normally not be in contact with the DNA if it were not in the A-helical form. One complex with two incorporated HNA nucleotides is surprisingly found in a one nucleotide-backtracked form, which is new for a DNA polymerase. This information can be used for engineering a new generation of more efficient HNA polymerase variants.


Subject(s)
Archaeal Proteins/chemistry , DNA Polymerase beta/chemistry , DNA, Archaeal/chemistry , Hexosephosphates/chemistry , Nucleotides/chemistry , RNA, Archaeal/chemistry , Thermococcus/chemistry , Archaeal Proteins/genetics , Archaeal Proteins/metabolism , Binding Sites , Cloning, Molecular , Crystallography, X-Ray , DNA Polymerase beta/genetics , DNA Polymerase beta/metabolism , DNA, Archaeal/genetics , DNA, Archaeal/metabolism , Directed Molecular Evolution/methods , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Genetic Vectors/chemistry , Genetic Vectors/metabolism , Hexosephosphates/metabolism , Kinetics , Molecular Dynamics Simulation , Mutation , Nucleic Acid Conformation , Nucleotides/genetics , Nucleotides/metabolism , Protein Binding , Protein Conformation, alpha-Helical , Protein Conformation, beta-Strand , Protein Engineering/methods , Protein Interaction Domains and Motifs , RNA, Archaeal/genetics , RNA, Archaeal/metabolism , Substrate Specificity , Thermococcus/enzymology
16.
J Cell Biol ; 85(3): 549-57, 1980 Jun.
Article in English | MEDLINE | ID: mdl-6248564

ABSTRACT

A continuous tissue culture cell line (Karpas line 120), derived from a patient with acute myeloblastic leukemia, not only demonstrates myeloblastic morphology and in vitro expression of several myeloid-specific biochemical markers but also contains Epstein-Barr virus (EBV) nuclear antigen. The present studies demonstrate EBV-genome-specific DNA within the total cellular DNA by molecular hybridization, thus establishing the presence of stable viral genome integration. The cells demonstrate complex coordinated myeloid functions including ingestion, degranulation, and respiratory burst activity. Line 120 cells show a respiratory burst (superoxide and hydrogen peroxide generation and hexosemonophosphate shunt activity) in response to soluble (phorbol myristate acetate) and particulate (latex beads) stimuli, as do normal granulocytes. They ingest complement-opsonized particles (lipopolysaccharide-oil droplets, zymosan, and bacteria), and degranulate in response to them. However, unlike normal granulocytes, the line 120 cells do not demonstrate respiratory burst activity in response to these complementopsonized particles. The dissociation between ingestion of complement-opsonized particles and activation of oxygen-dependent bactericidal activity severely impairs bacterial killing as compared with normal polymorphonuclear phagocytes.


Subject(s)
Cell Transformation, Viral , Herpesvirus 4, Human , Leukemia, Myeloid, Acute/physiopathology , Oxygen Consumption , Phagocytosis , Animals , Blood Bactericidal Activity , Cell Line , DNA, Viral/analysis , Herpesvirus 4, Human/genetics , Hexosephosphates/metabolism , Hydrogen Peroxide/metabolism , Leukemia, Experimental/physiopathology , Superoxides/metabolism
17.
J Cell Biol ; 97(6): 1700-6, 1983 Dec.
Article in English | MEDLINE | ID: mdl-6315741

ABSTRACT

Phosphomannosyl residues present on lysosomal enzymes are specifically recognized by the mannose 6-phosphate receptor protein. This interaction results in the selective targeting of lysosomal enzymes to lysosomes. While this pathway is operative in many cell types, we have found four cultured cell lines that are deficient in the ability to bind lysosomal enzymes containing phosphomannosyl residues to their intracellular or surface membranes (Gabel, C., D. Goldberg, and S. Kornfeld, 1983, Proc. Natl. Acad. Sci. USA, 80:775-779). These cells appear to segregate lysosomal enzymes by an alternate intracellular pathway. To determine the basis for the lack of mannose 6-phosphate receptor activity in these cell lines, we studied the biosynthesis of the receptor in receptor-positive (BW5147) and receptor-deficient (P388D1 and MOPC 315) cells. The cells were labeled with [2-3H]mannose or [35S]methionine and the receptor was immunoprecipitated with an antireceptor antiserum. BW5147 cells synthesize a receptor protein whose size increases after translation/glycosylation. MOPC 315 cells produce an apparently normal receptor and degrade it rapidly. P388D1 cells fail to synthesize any detectable receptor. The receptor from BW5147 and MOPC 315 cells is a glycoprotein with both high mannose and complex asparagine-linked oligosaccharides. The complex-type units become fully sialylated and remain so during long periods of chase.


Subject(s)
Hexosephosphates/metabolism , Mannosephosphates/metabolism , Receptors, Cell Surface/genetics , Animals , Cell Line , Glycopeptides/isolation & purification , Leukemia P388/metabolism , Lymphoma/metabolism , Mice , Plasmacytoma/metabolism , Receptor, IGF Type 2 , Receptors, Cell Surface/isolation & purification
18.
J Cell Biol ; 104(3): 725-31, 1987 Mar.
Article in English | MEDLINE | ID: mdl-2950122

ABSTRACT

Blood-borne lymphocytes extravasate in large numbers within peripheral lymph nodes (PN) and other secondary lymphoid organs. It has been proposed that the initiation of extravasation is based upon a family of cell adhesion molecules (homing receptors) that mediate lymphocyte attachment to specialized high endothelial venules (HEV) within the lymphoid tissues. A putative homing receptor has been identified by the monoclonal antibody, MEL-14, which recognizes an 80-90-kD glycoprotein on the surface of mouse lymphocytes and blocks the attachment of lymphocytes to PN HEV. In a companion study we characterize a carbohydrate-binding receptor on the surface of mouse lymphocytes that also appears to be involved in the interaction of lymphocytes with PN HEV. This receptor selectively binds to fluorescent beads derivatized with PPME, a polysaccharide rich in mannose-6-phosphate. In this report we examine the relationship between this carbohydrate-binding receptor and the putative homing receptor identified by the MEL-14 antibody. We found that: MEL-14 completely and selectively blocks the activity of the carbohydrate-binding receptor on mouse lymphocytes; the ability of six lymphoma cell lines to bind PPME beads correlates with cell-surface expression of the MEL-14 antigen, as well as PN HEV-binding activity; selection of lymphoma cell line variants for PPME-bead binding by fluorescence-activated cell sorting (FACS) produces highly correlated (r = 0.974, P less than 0.001) and selective changes in MEL-14 antigen expression. These results show that the carbohydrate-binding receptor on lymphocytes and the MEL-14 antigen, which have been independently implicated as receptors involved in PN-specific HEV attachment, are very closely related, if not identical, molecules.


Subject(s)
Antigens, Surface/analysis , Carrier Proteins/physiology , Hexosephosphates/metabolism , Lymphocytes/physiology , Mannosephosphates/metabolism , Animals , Antibodies, Monoclonal , Antigen-Antibody Complex , Cell Line , Lymphocytes/cytology , Lymphoma/pathology , Lymphoma/physiopathology , Mice , Receptor, IGF Type 2
19.
J Cell Biol ; 110(4): 963-72, 1990 Apr.
Article in English | MEDLINE | ID: mdl-2157722

ABSTRACT

The early steps in the biosynthesis of Mr 46,000 mannose 6-phosphate-specific receptor (MPR 46) have been studied by in vivo labeling of transfected BHK cells. The acquisition of phosphomannan-binding activity was compared with changes in protein structure and posttranslational modifications of MPR 46. Intramolecular disulfide bonds were formed before MPR 46 acquired a ligand-binding conformation. A conformational change that resulted in increased trypsin resistance, formation of highly immunogenic epitopes and assembly to noncovalently linked homodimers was observed almost simultaneously with the acquisition of ligand-binding activity. MPR 46 was shown to acquire ligand-binding activity before N-linked oligosaccharides were processed to complex-type forms. Maturation of the ligand-binding conformation was observed under conditions where transport to the Golgi was blocked by lowering the temperature to 16 degrees C, or by addition of brefeldin A or dinitrophenol to the medium at 37 degrees C. This suggests that receptor maturation and assembly take place before reaching the Golgi complex. The affinity towards phosphomannan-containing ligands was shown to be similar for the high-mannose and complex-glycosylated forms of MPR 46.


Subject(s)
Golgi Apparatus/metabolism , Hexosephosphates/metabolism , Mannosephosphates/metabolism , Receptors, Cell Surface/metabolism , Animals , Cell Line , Humans , Kinetics , Ligands , Mannans/metabolism , Molecular Weight , Protein Conformation , Receptor, IGF Type 2 , Receptors, Cell Surface/genetics , Receptors, Cell Surface/ultrastructure , Transfection
20.
J Cell Biol ; 84(1): 77-86, 1980 Jan.
Article in English | MEDLINE | ID: mdl-7350171

ABSTRACT

Mild acid hydrolysis of phosphomannan secreted by the yeast hansenula holstii (NRRL Y- 2448) produces two phosphomannyl fragments which differ strikingly in their potency as inhibitors of pinocytosis of human beta-glucuronidase by human fibroblasts. The larger molecular weight polyphosphomonoester fragment is 100,000-fold more potent an inhibitor of enzyme uptake than the smaller penta-mannosyl-monophosphate fragment. Binding to attached fibroblasts at 3 degrees C was much greater with the polyphosphomonoester fragment than with the pentamannosyl-monophosphate. The larger molecular weight fragment was also subject to adsorptive pinocytosis and was taken up by fibroblasts at a rate 30- fold greater than the rate of uptake of pentamannosyl-monophosphate. Evidence that the polyphosphomonoester fragment is taken up by the phosphomannosyl-recognition system that mediates uptake of lysosomal enzymes includes: (a) its pinocytosis is inhibited by the same compounds that competitively inhibit enzyme pinocytosis (mannose-6-phosphate and phosphomannan from saccharomyces cerevisiae mutant mnn-1); (b) alkaline phosphatase treatment greatly reduces its susceptibility to pinocytosis; (c) its pinocytosis is competitively inhibited by high-uptake human beta-glucuronidase; and (d) this inhibition by high-uptake enzyme is dramatically reduced by prior treatment of the enzyme with alkaline phosphatase or endoglycosidase-H. Endoglycosidase-H treatment human beta-glucuronidase dramatically reduced its susceptibility to pinocytosis by fibroblasts. The phosphomannosyl components of high- uptake enzyme released by endoglycosidase-H treatment were much less effective inhibitors of polyphosphomonoester pinocytosis than when present on the phosphomannyl-enzyme. These results suggest that high-uptake acid hydrolases may be polyvalent ligands analogous to the polyphosphomonoester mannan fragment whose pinocytosis depends on interaction of more than one phospho-mannosyl recognition marker with pinocytosis receptors on fibroblasts.


Subject(s)
Glucuronidase/metabolism , Hexosephosphates/metabolism , Mannans/metabolism , Mannosephosphates/metabolism , Pinocytosis , Polysaccharides/metabolism , Receptors, Drug/metabolism , Alkaline Phosphatase/pharmacology , Fibroblasts , Humans , Mannans/pharmacology , Mannosephosphates/pharmacology , Pinocytosis/drug effects
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