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1.
Fish Shellfish Immunol ; 140: 108967, 2023 Sep.
Article in English | MEDLINE | ID: mdl-37488041

ABSTRACT

The tryptophan-kynurenine (TRP-KYN) pathway is involved in several biological functions, including immunosuppression, inflammatory response, and tumor suppression. Six TRP-KYN pathway-related genes, tryptophan 2,3-dioxygenase (TDO), indoleamine 2,3-dioxygenase 2 (IDO2), aminoadipate aminotransferase (AADAT), glutamate oxaloacetate transaminase 2 (GOT2), kynurenine monooxygenase (KMO), and kynureninase (KYNU) have been identified and cloned from the jawless vertebrate lamprey (Lampetra japonica) to gain insights into their evolution and characterization. Expression distribution showed that the key gene Lj-TDO was highly expressed in the oral gland. Real-time quantitative PCR showed that TRP-KYN pathway-related genes were significantly overexpressed after multi-stimulation. RNA interference showed that Lj-IDO2 knockdown regulated the expression of inflammatory factors. In conclusion, our study successfully clarified the ancestral features and functions of the TRP-KYN pathway, while providing valuable insights into the involvement of this pathway in the immune responses of a jawless vertebrate.


Subject(s)
Kynurenine , Tryptophan , Animals , Tryptophan/metabolism , Kynurenine/analysis , Kynurenine/metabolism , Lampreys/genetics , Lampreys/metabolism , Indoleamine-Pyrrole 2,3,-Dioxygenase/genetics , Immunity, Innate/genetics
2.
J Pathol ; 256(3): 256-261, 2022 03.
Article in English | MEDLINE | ID: mdl-34859884

ABSTRACT

COVID-19 is a pandemic with high morbidity and mortality. In an autopsy cohort of COVID-19 patients, we found extensive accumulation of the tryptophan degradation products 3-hydroxy-anthranilic acid and quinolinic acid in the lungs, heart, and brain. This was not related to the expression of the tryptophan-catabolizing indoleamine 2,3-dioxygenase (IDO)-1, but rather to that of its isoform IDO-2, which otherwise is expressed rarely. Bioavailability of tryptophan is an absolute requirement for proper cell functioning and synthesis of hormones, whereas its degradation products can cause cell death. Markers of apoptosis and severe cellular stress were associated with IDO-2 expression in large areas of lung and heart tissue, whereas affected areas in brain were more restricted. Analyses of tissue, cerebrospinal fluid, and sequential plasma samples indicate early initiation of the kynurenine/aryl-hydrocarbon receptor/IDO-2 axis as a positive feedback loop, potentially leading to severe COVID-19 pathology. © 2021 The Authors. The Journal of Pathology published by John Wiley & Sons, Ltd on behalf of The Pathological Society of Great Britain and Ireland.


Subject(s)
Brain/enzymology , COVID-19/enzymology , Indoleamine-Pyrrole 2,3,-Dioxygenase/analysis , Lung/enzymology , Myocardium/enzymology , 3-Hydroxyanthranilic Acid/analysis , Adult , Aged , Apoptosis , Autopsy , Brain/pathology , COVID-19/mortality , COVID-19/pathology , COVID-19/virology , Humans , Kynurenine/analysis , Lung/pathology , Middle Aged , Myocardium/pathology , Prospective Studies , Quinolinic Acid/analysis , Severity of Illness Index , Tryptophan/analysis
3.
Cancer Sci ; 112(3): 1038-1047, 2021 Mar.
Article in English | MEDLINE | ID: mdl-33410234

ABSTRACT

Indoleamine 2,3-dioxygenase 1 (IDO1) is a key enzyme associated with immunomodulation through its regulation of the tryptophan-kynurenine (Kyn) pathway in advanced cancers, including metastatic renal cell carcinoma (mRCC). However, the failure of IDO1 inhibitors when used in combination with immune checkpoint inhibitors (ICIs), as observed in clinical trials, raises a number of questions. This study aimed to investigate the association of tryptophan 2,3-dioxygenase (TDO) and IDO1 with cancer development and resistance to immunotherapy in patients with RCC. In our analysis of RCC tissue samples, tissue Kyn levels were elevated in advanced-stage RCC and correlated well with TDO expression levels in RCC tumor cells. In patients with mRCC, TDO rather than IDO1 was expressed in RCC tumor cells, showing a strong association with Kyn expression. Furthermore, immunohistochemical staining of TDO was strongly associated with the staining intensity of forkhead box P3, as well as ICI therapy response and survival in patients with mRCC. Our study is the first to show that TDO expression in tumor tissues is associated with progression and survival, confirming its potential as a predictive biomarker of primary resistance to immunotherapy in patients with mRCC. Our findings suggest that strategies aimed at inhibiting TDO, rather than IDO1, in combination with ICI therapy may aid in the control of mRCC progression.


Subject(s)
Antineoplastic Combined Chemotherapy Protocols/pharmacology , Carcinoma, Renal Cell/therapy , Kidney Neoplasms/therapy , Kidney/pathology , Tryptophan Oxygenase/metabolism , Aged , Aged, 80 and over , Antineoplastic Combined Chemotherapy Protocols/therapeutic use , Carcinoma, Renal Cell/mortality , Carcinoma, Renal Cell/pathology , Cell Line, Tumor , Chemotherapy, Adjuvant , Disease Progression , Drug Resistance, Neoplasm , Female , Humans , Immune Checkpoint Inhibitors/pharmacology , Immune Checkpoint Inhibitors/therapeutic use , Immunohistochemistry , Indoleamine-Pyrrole 2,3,-Dioxygenase/antagonists & inhibitors , Indoleamine-Pyrrole 2,3,-Dioxygenase/metabolism , Kidney/surgery , Kidney Neoplasms/mortality , Kidney Neoplasms/pathology , Kynurenine/analysis , Kynurenine/metabolism , Male , Middle Aged , Nephrectomy , Progression-Free Survival , Tryptophan/metabolism , Tryptophan Oxygenase/analysis , Tryptophan Oxygenase/antagonists & inhibitors
4.
Int J Mol Sci ; 22(13)2021 Jun 23.
Article in English | MEDLINE | ID: mdl-34201647

ABSTRACT

Progressive degeneration of neurons and aggravation of dopaminergic neurons in the substantia nigra pars compacta results in the loss of dopamine in the brain of Parkinson's disease (PD) patients. Numerous therapies, exhibiting transient efficacy have been developed; however, they are mostly accompanied by side effects and limited reliability, therefore instigating the need to develop novel optimistic treatment targets. Significant therapeutic targets have been identified, namely: chaperones, protein Abelson, glucocerebrosidase-1, calcium, neuromelanin, ubiquitin-proteasome system, neuroinflammation, mitochondrial dysfunction, and the kynurenine pathway (KP). The role of KP and its metabolites and enzymes in PD, namely quinolinic acid (QUIN), kynurenic acid (KYNA), 3-hydroxykynurenine (3-HK), 3-hydroxyanthranillic acid (3-HAA), kunurenine-3-monooxygenase (KMO), etc. has been reported. The neurotoxic QUIN, N-methyl-D-aspartate (NMDA) receptor agonist, and neuroprotective KYNA-which antagonizes QUIN actions-primarily justify the Janus-faced role of KP in PD. Moreover, KP has been reported to play a biomarker role in PD detection. Therefore, the authors detail the neurotoxic, neuroprotective, and immunomodulatory neuroactive components, alongside the upstream and downstream metabolic pathways of KP, forming a basis for a therapeutic paradigm of the disease while recognizing KP as a potential biomarker in PD, thus facilitating the development of a suitable target in PD management.


Subject(s)
Biomarkers/analysis , Kynurenine/metabolism , Parkinson Disease/metabolism , Central Nervous System/metabolism , Gastrointestinal Microbiome , Humans , Kynurenine/analysis , Metabolic Networks and Pathways , Mitochondria/metabolism , Mitochondria/pathology , Molecular Targeted Therapy/methods , Oxidative Stress , Parkinson Disease/drug therapy , Parkinson Disease/microbiology
5.
Angew Chem Int Ed Engl ; 60(18): 9869-9874, 2021 04 26.
Article in English | MEDLINE | ID: mdl-33565680

ABSTRACT

The immunoregulatory enzyme indoleamine-2,3-dioxygenase (IDO1) strengthens cancer immune escape, and inhibition of IDO1 by means of new chemotypes and mechanisms of action is considered a promising opportunity for IDO1 inhibitor discovery. IDO1 is a cofactor-binding, redox-sensitive protein, which calls for monitoring of IDO1 activity in its native cellular environment. We developed a new, robust fluorescence-based assay amenable to high throughput, which detects kynurenine in cells. Screening of a ca. 150 000-member compound library discovered unprecedented, potent IDO1 modulators with different mechanisms of action, including direct IDO1 inhibitors, regulators of IDO1 expression, and inhibitors of heme synthesis. Three IDO1-modulator chemotypes were identified that bind to apo-IDO1 and compete with the heme cofactor. Our new cell-based technology opens up novel opportunities for medicinal chemistry programs in immuno-oncology.


Subject(s)
Enzyme Inhibitors/pharmacology , Indoleamine-Pyrrole 2,3,-Dioxygenase/antagonists & inhibitors , Cell Line, Tumor , Coumarins/chemistry , Enzyme Inhibitors/chemistry , Fluorescent Dyes/chemistry , Humans , Indoleamine-Pyrrole 2,3,-Dioxygenase/genetics , Indoleamine-Pyrrole 2,3,-Dioxygenase/metabolism , Kynurenine/analysis , Molecular Structure
6.
Anal Chem ; 92(13): 8836-8844, 2020 07 07.
Article in English | MEDLINE | ID: mdl-32490663

ABSTRACT

Reference standardization was developed to address quantification and harmonization challenges for high-resolution metabolomics (HRM) data collected across different studies or analytical methods. Reference standardization relies on the concurrent analysis of calibrated pooled reference samples at predefined intervals and enables a single-step batch correction and quantification for high-throughput metabolomics. Here, we provide quantitative measures of approximately 200 metabolites for each of three pooled reference materials (220 metabolites for Qstd3, 211 metabolites for CHEAR, 204 metabolites for NIST1950) and show application of this approach for quantification supports harmonization of metabolomics data collected from 3677 human samples in 17 separate studies analyzed by two complementary HRM methods over a 17-month period. The results establish reference standardization as a method suitable for harmonizing large-scale metabolomics data and extending capabilities to quantify large numbers of known and unidentified metabolites detected by high-resolution mass spectrometry methods.


Subject(s)
Metabolome , Metabolomics/standards , Chromatography, High Pressure Liquid , Humans , Hydrophobic and Hydrophilic Interactions , Kynurenine/analysis , Kynurenine/metabolism , Kynurenine/standards , Mass Spectrometry , Metabolomics/methods , Reference Standards , Reproducibility of Results , Tryptophan/analysis , Tryptophan/metabolism , Tryptophan/standards
7.
Mass Spectrom Rev ; 37(1): 3-21, 2018 01.
Article in English | MEDLINE | ID: mdl-27018865

ABSTRACT

It is now 25 years since we commenced the study of the negative-ion fragmentations of peptides and we have recently concluded this research with investigations of the negative-ion chemistry of most post-translational functional groups. Our first negative-ion peptide review (Bowie, Brinkworth, & Dua, 2002) dealt with the characteristic backbone fragmentations and side-chain cleavages from (M-H)- ions of underivatized peptides, while the second (Bilusich & Bowie, 2009) included negative-ion backbone cleavages for Ser and Cys and some initial data on some post-translational groups including disulfides. This third and final review provides a brief summary of the major backbone and side chain cleavages outlined before (Bowie, Brinkworth, & Dua, 2002) and describes the quantum mechanical hydrogen tunneling associated with some proton transfers in enolate anion/enolate systems. The review then describes, in more depth, the negative-ion cleavages of the post-translational groups Kyn, isoAsp, pyroglu, disulfides, phosphates, and sulfates. Particular emphasis is devoted to disulfides (both intra- and intermolecular) and phosphates because of the extensive and spectacular anion chemistry shown by these groups. © 2016 Wiley Periodicals, Inc. Mass Spec Rev.


Subject(s)
Anions/analysis , Peptides/chemistry , Protein Processing, Post-Translational , Spectrometry, Mass, Electrospray Ionization/methods , Amino Acid Sequence , Animals , Disulfides/analysis , Humans , Isoaspartic Acid/analysis , Kynurenine/analysis , Phosphates/analysis , Pyrrolidonecarboxylic Acid/analysis , Sulfates/analysis
8.
BMC Infect Dis ; 19(1): 223, 2019 Mar 04.
Article in English | MEDLINE | ID: mdl-30832615

ABSTRACT

BACKGROUND: Indoleamine 2, 3-dioxygenase (IDO) is a key enzyme in the degradation of tryptophan (Trp) to kynurenine (Kyn). We measured IDO activity as the Kyn to Trp ratio, and investigated whether IDO could be used to assess prognosis of acquired immune deficiency Sydrome (AIDS) patients with pneumocystis pneumonia (PCP). METHODS: The Kyn and Trp concentration were measured by UPLC-MS/MS in plasma samples. A total of 49 AIDS-PCP patients were included in the analysis. Clinical characteristics and Kyn/Trp ratio were compared between survivors and non-survivors. RESULTS: Kyn/Trp ratio was significantly lower after anti-PCP treatment in AIDS patients with PCP (P < 0.0001). Plasma Kyn/Trp ratio was higher in patients with PaO2/FiO2 ≤ 300 mmHg than in those with PaO2/FiO2 > 300 mmHg (P = 0.007). Kyn/Trp ratio, D-dimer and CRP showed much higher AUC for predicting death of AIDS-PCP patients. Kyn/Trp ratio was useful for predicting the mortality of AIDS-PCP due to a significantly higher Kyn/Trp ratio in the non-survivors (P = 0.002). And the high Kyn/Trp ratio group had higher mortality rate than low Kyn/Trp group (32.1% vs. 9.1%, respectively, p = 0.024). CONCLUSION: Activation of the kynurenine pathway is associated with the severity and fatal outcomes of AIDS patients with pneumocystis pneumonia.


Subject(s)
HIV Infections/pathology , Pneumonia/diagnosis , Adult , Antifungal Agents/therapeutic use , Area Under Curve , Biomarkers/metabolism , Chromatography, High Pressure Liquid , Cohort Studies , Female , HIV Infections/complications , HIV Infections/mortality , Humans , Indoleamine-Pyrrole 2,3,-Dioxygenase/metabolism , Kynurenine/analysis , Kynurenine/blood , Male , Middle Aged , Pneumocystis/isolation & purification , Pneumonia/complications , Pneumonia/drug therapy , Pneumonia/microbiology , Prognosis , ROC Curve , Survival Rate , Tandem Mass Spectrometry , Tryptophan/analysis , Tryptophan/blood
9.
Brain Behav Immun ; 74: 205-212, 2018 11.
Article in English | MEDLINE | ID: mdl-30213652

ABSTRACT

Ketamine has rapid antidepressant effects on treatment-resistant depression, but the biological mechanism underpinning this effect is less clear. Our aims were to examine whether kynurenine pathway metabolites were altered by six infusions of ketamine and whether these biological factors could act as potential biomarkers to predict ketamine's antidepressant effects. Six intravenous infusions of ketamine (0.5 mg/kg) were administered to 84 patients with unipolar and bipolar depression over a 12-d period. Symptom severity and response were assessed using the Montgomery-Asberg Scale (MADRS), and blood samples were collected at baseline and 24 h following the first infusion and at 24 h and 14 d after the sixth infusion (24 h, 13 d and 26 d). Blood samples from sixty healthy controls were collected for comparison with samples from the patients. Serum concentrations of tryptophan (TRP), kynurenine (KYN) and kynurenic acid (KYNA) were measured by the liquid chromatography-tandem mass spectrometry method. At baseline, serum levels of TRP and KYNA and the KYNA/KYN ratio were lower and the KYN/TRP ratio was greater in depressed patients than in healthy controls. Overall, fifty (59.5%) patients responded to ketamine at 13 d. Ketamine responders had a greater KYNA level and KYNA/KYN ratio than nonresponders at 24 h and 13 d (all P < 0.05). Elevations in the KYNA levels and KYNA/KYN ratio at 24 h were significantly associated with reductions in MADRS scores at 24 h, 13 d and 26 d in the linear regression analysis (all P < 0.05). Our results showed a possible involvement of the kynurenine pathway in the rapid antidepressant effect of ketamine. Early changes in serum KYNA levels and the KYNA/KYN ratio could be potential predictors of antidepressanteffects of repeated ketamine administration.


Subject(s)
Bipolar Disorder/drug therapy , Depressive Disorder/drug therapy , Ketamine/pharmacology , Administration, Intravenous , Adult , Antidepressive Agents/metabolism , Antidepressive Agents/pharmacology , China , Chromatography, Liquid/methods , Depression/blood , Depression/drug therapy , Depression/metabolism , Female , Humans , Ketamine/metabolism , Kynurenic Acid/analysis , Kynurenic Acid/blood , Kynurenine/analysis , Kynurenine/blood , Kynurenine/metabolism , Male , Tandem Mass Spectrometry/methods , Tryptophan/analysis , Tryptophan/blood
10.
J Proteome Res ; 16(6): 2294-2306, 2017 06 02.
Article in English | MEDLINE | ID: mdl-28452488

ABSTRACT

The transplantation of human pancreatic islets is a therapeutic possibility for a subset of type 1 diabetic patients who experience severe hypoglycemia. Pre- and post-transplantation loss in islet viability and function, however, is a major efficacy-limiting impediment. To investigate the effects of inflammation and hypoxia, the main obstacles hampering the survival and function of isolated, cultured, and transplanted islets, we conducted a comprehensive metabolomics evaluation of human islets in parallel with dynamic glucose-stimulated insulin release (GSIR) perifusion studies for functional evaluation. Metabolomics profiling of media and cell samples identified a total of 241 and 361 biochemicals, respectively. Metabolites that were altered in highly significant manner in both included, for example, kynurenine, kynurenate, citrulline, and mannitol/sorbitol under inflammation (all elevated) plus lactate (elevated) and N-formylmethionine (depressed) for hypoxia. Dynamic GSIR experiments, which capture both first- and second-phase insulin release, found severely depressed insulin-secretion under hypoxia, whereas elevated baseline and stimulated insulin-secretion was measured for islet exposed to the inflammatory cytokine cocktail (IL-1ß, IFN-γ, and TNF-α). Because of the uniquely large changes observed in kynurenine and kynurenate, they might serve as potential biomarkers of islet inflammation, and indoleamine-2,3-dioxygenase on the corresponding pathway could be a worthwhile therapeutic target to dampen inflammatory effects.


Subject(s)
Hyperglycemia , Hypoxia , Inflammation , Islets of Langerhans/metabolism , Metabolomics/methods , Biomarkers/analysis , Humans , Inflammation/diagnosis , Insulin/metabolism , Insulin Secretion , Islets of Langerhans Transplantation , Kynurenic Acid/analysis , Kynurenine/analysis
11.
J Exp Biol ; 220(Pt 7): 1267-1276, 2017 Apr 01.
Article in English | MEDLINE | ID: mdl-28108668

ABSTRACT

Toxic Heliconius butterflies have yellow hindwing bars that - unlike those of their closest relatives - reflect ultraviolet (UV) and long wavelength light, and also fluoresce. The pigment in the yellow scales is 3-hydroxy-dl-kynurenine (3-OHK), which is found in the hair and scales of a variety of animals. In other butterflies like pierids with color schemes characterized by independent sources of variation in UV and human-visible yellow/orange, behavioral experiments have generally implicated the UV component as most relevant to mate choice. This has not been addressed in Heliconius butterflies, where variation exists in analogous color components, but moreover where fluorescence due to 3-OHK could also contribute to yellow wing coloration. In addition, the potential cost due to predator visibility is largely unknown for the analogous well-studied pierid butterfly species. In field studies with butterfly paper models, we show that both UV and 3-OHK yellow act as signals for H. erato when compared with models lacking UV or resembling ancestral Eueides yellow, respectively, but attack rates by birds do not differ significantly between the models. Furthermore, measurement of the quantum yield and reflectance spectra of 3-OHK indicates that fluorescence does not contribute to the visual signal under broad-spectrum illumination. Our results suggest that the use of 3-OHK pigmentation instead of ancestral yellow was driven by sexual selection rather than predation.


Subject(s)
Butterflies/physiology , Predatory Behavior , Sexual Behavior, Animal , Wings, Animal/physiology , Animals , Female , Fluorescence , Kynurenine/analogs & derivatives , Kynurenine/analysis , Male , Pigmentation , Pigments, Biological/analysis , Ultraviolet Rays , Vision, Ocular
12.
J Sep Sci ; 40(15): 3020-3045, 2017 Aug.
Article in English | MEDLINE | ID: mdl-28590049

ABSTRACT

The kynurenine pathway generates multiple tryptophan metabolites called collectively kynurenines and leads to formation of the enzyme cofactor nicotinamide adenine dinucleotide. The first step in this pathway is tryptophan degradation, initiated by the rate-limiting enzymes indoleamine 2,3-dioxygenase, or tryptophan 2,3-dioxygenase, depending on the tissue. The balanced kynurenine metabolism, which has been a subject of multiple studies in last decades, plays an important role in several physiological and pathological conditions such as infections, autoimmunity, neurological disorders, cancer, cataracts, as well as pregnancy. Understanding the regulation of tryptophan depletion provide novel diagnostic and treatment opportunities, however it requires reliable methods for quantification of kynurenines in biological samples with complex composition (body fluids, tissues, or cells). Trace concentrations, interference of sample components, and instability of some tryptophan metabolites need to be addressed using analytical methods. The novel separation approaches and optimized extraction protocols help to overcome difficulties in analyzing kynurenines within the complex tissue material. Recent developments in chromatography coupled with mass spectrometry provide new opportunity for quantification of tryptophan and its degradation products in various biological samples. In this review, we present current accomplishments in the chromatographic methodologies proposed for detection of tryptophan metabolites and provide a guide for choosing the optimal approach.


Subject(s)
Chromatography , Kynurenine/analysis , Tryptophan/analysis , Humans , Tryptophan/metabolism
13.
J Proteome Res ; 15(8): 2729-38, 2016 08 05.
Article in English | MEDLINE | ID: mdl-27384260

ABSTRACT

Gastric cancer (GC) is among the most common cancers worldwide. Gastric carcinogenesis is a multistep and multifactorial process beginning with chronic gastritis induced by Helicobacter pylori (H. pylori) infection. This process is often described via a sequence of events known as Correas's cascade, a stepwise progression from nonactive gastritis, chronic active gastritis, precursor lesions of gastric cancer (atrophy, intestinal metaplasia, and dysplasia), and finally adenocarcinoma. Our aim was to identify a plasma metabolic pattern characteristic of GC through disease progression within the Correa's cascade. This study involved the analysis of plasma samples collected from 143 patients classified in four groups: patients with nonactive gastritis and no H. pylori infection, H. pylori infected patients with chronic active gastritis, infected or noninfected patients with precursor lesions of gastric cancer, and GC. Independent partial least-squares-discriminant binary models of UPLC-ESI(+)-TOFMS metabolic profiles, implemented in a decision-directed acyclic graph, allowed the identification of tryptophan and kynurenine as discriminant metabolites that could be attributed to indoleamine-2,3-dioxygenase upregulation in cancer patients leading to tryptophan depletion and kynurenine metabolites generation. Furthermore, phenylacetylglutamine was also classified as a discriminant metabolite. Our data suggest the use of tryptophan, kynurenine, and phenylacetylglutamine as potential GC biomarkers.


Subject(s)
Metabolomics/methods , Stomach Neoplasms/diagnosis , Adenocarcinoma/metabolism , Biomarkers, Tumor/blood , Chromatography, High Pressure Liquid , Disease Progression , Female , Gastritis/metabolism , Glutamine/analogs & derivatives , Glutamine/analysis , Glutamine/metabolism , Helicobacter Infections , Helicobacter pylori , Humans , Kynurenine/analysis , Kynurenine/metabolism , Male , Mass Spectrometry , Middle Aged , Plasma/metabolism , Precancerous Conditions/metabolism , Stomach Neoplasms/metabolism , Stomach Neoplasms/pathology , Tryptophan/analysis , Tryptophan/metabolism
14.
Anal Chem ; 86(14): 6850-7, 2014 Jul 15.
Article in English | MEDLINE | ID: mdl-24937252

ABSTRACT

We describe the characterization of degradation products responsible for color change in near UV-visible light-irradiated and heat-stressed monoclonal antibody (mAb) drug product in liquid formulation. The treated samples were characterized using reversed-phase HPLC and size-exclusion HPLC with absorption spectroscopy. Both methods showed color change was due to chromophores formed on the mAb but not associated with the formulation excipients in both light-irradiated and heat-stressed mAb samples. These chromophores were further located by a new peptide mapping methodology with a combination of mass spectrometry and absorption spectroscopy. Mass spectrometry identified the major tryptophan oxidation products as kynurenine (Kyn), N-formylkynurenine (NFK), and hydroxytryptophan (OH-Trp). The absorption spectra showed that each of the tryptophan oxidation products exhibited a distinct absorption band above 280 nm shifted to the longer wavelengths in the order of OH-Trp < NFK < Kyn. The Kyn-containing peptide was detected by absorption at 420 nm. No new absorption bands were observed for either methionine or histidine oxidation products. This confirmed that tryptophan oxidation products, but not methionine and histidine oxidation products, were responsible for the color change. It is worth noting that a new oxidation product with the loss of hydrogen (2 Da mass decrease) for Trp-107 of the heavy chain was identified in the heat-stressed mAb sample. This oxidized tryptophan residue exhibited a distinct absorption band at the maximum absorbance wavelength 335 nm, which is responsible for the color change to yellow. This study showed that the new peptide mapping methodology with a combination of mass spectrometry and absorption spectroscopy is useful to identify tryptophan oxidation products as chromophores responsible for color change in stressed mAb drug product.


Subject(s)
Antibodies, Monoclonal/chemistry , Tryptophan/chemistry , 5-Hydroxytryptophan/analysis , 5-Hydroxytryptophan/chemistry , Antibodies, Monoclonal/analysis , Chromatography, High Pressure Liquid/instrumentation , Chromatography, High Pressure Liquid/methods , Color , Hot Temperature , Kynurenine/analogs & derivatives , Kynurenine/analysis , Kynurenine/chemistry , Mass Spectrometry/methods , Methionine/chemistry , Oxidation-Reduction , Peptide Mapping , Spectrophotometry, Ultraviolet/methods , Ultraviolet Rays
15.
Article in English | MEDLINE | ID: mdl-39186887

ABSTRACT

Semen traces are considered important pieces of evidence in forensic investigations, especially those involving sexsual offenses. Recently, our research group developed a fluorescence-based technique to accurately determine the age of semen traces. However, the specific compounds resonsible for the fluoresescent behaviour of ageing semens remain unknown. As such, in this exploratory study, the aim is to identify the components associated with the fluorescent behavior of ageing semen traces. In this investigation semen stains and various biofluorophores commonly found in body fluids were left to aged for 0, 2, 4, 7, 14 and 21 days. Subsequently, thin-layer chromatography (TLC) and ultra-performance liquid chromatography (UPLC) mass spectrometry were performed to identify the biofluorophores present in semen. Several contributors to the autofluorescence could be identified in semen stain, these include tryptophan, kynurenine, kynurenic acid, and norharman. The study sheds light on the.


Subject(s)
Semen , Humans , Semen/chemistry , Male , Chromatography, High Pressure Liquid/methods , Chromatography, Thin Layer/methods , Tryptophan/analysis , Tryptophan/chemistry , Kynurenic Acid/analysis , Kynurenic Acid/chemistry , Kynurenine/analysis , Kynurenine/analogs & derivatives , Kynurenine/chemistry , Kynurenine/metabolism , Mass Spectrometry/methods
16.
Anal Chim Acta ; 1327: 343149, 2024 Oct 23.
Article in English | MEDLINE | ID: mdl-39266061

ABSTRACT

BACKGROUND: We have developed and validated methods for the determination of three major tryptophan metabolites metabolized by the kynurenine pathway, namely kynurenine (KYN), 3-hydroxykynurenine (3-HK), and 3-hydroxyanthranilic acid (3-HAA). KYN and 3-HK were determined using RP-HPLC-UV, and 3-HAA using RP-HPLC-FL. We then developed a comparative method based on CE-UV. The developed methods were validated and 36 samples of human brain glioma tissue homogenates were assayed in all 4 grades of malignancy, and the concentration levels of assayed metabolites were compared with available clinical data. RESULTS: Each of the methods is characterized by high precision, accuracy and repeatability, and the determined LOQ values indicate the possibility of performing quantitative analysis on the available samples of human glioma tumors (36 samples in grades G1-G4). The concentration values of selected metabolites obtained using HPLC methods were subjected to statistical analysis and preliminary clinical data processing. We found statistically significant differences in the concentrations of KYN, 3-HK and 3-HAA between the various grades of the disease, and characterized these differences more precisely by means of the Dunn-Bonferroni post hoc test. We did not find that the patient's environment or habits significantly affected the metabolites concentration of the study samples population. In addition, we showed a high positive correlation between KYN, 3-HK and 3-HAA, which appears to be a characteristic that describes metabolic changes of Trp in relation to KYN, 3-HK and 3-HAA, and indicates potential diagnostic value. SIGNIFICANCE: The preliminary studies carried out contribute new knowledge on the molecular basis of human brain glioma. They also provide valuable information useful for the development of glioma diagnostics, differentiation of disease grades and assessment of the patient's condition. The obtained relationships between metabolite concentrations and the grade of malignancy of the disease and correlations between metabolite concentrations constitute the basis for further broader biochemical and clinical analysis.


Subject(s)
Brain Neoplasms , Glioma , Kynurenine , Tryptophan , Humans , Tryptophan/metabolism , Tryptophan/analysis , Glioma/metabolism , Chromatography, High Pressure Liquid , Kynurenine/metabolism , Kynurenine/analogs & derivatives , Kynurenine/analysis , Male , Middle Aged , Female , Brain Neoplasms/metabolism , 3-Hydroxyanthranilic Acid/metabolism , 3-Hydroxyanthranilic Acid/analysis , Adult , Aged
17.
Nat Commun ; 15(1): 6216, 2024 Jul 23.
Article in English | MEDLINE | ID: mdl-39043677

ABSTRACT

Human cytomegalovirus (CMV) is a highly prevalent herpesvirus that is often transmitted to the neonate via breast milk. Postnatal CMV transmission can have negative health consequences for preterm and immunocompromised infants, but any effects on healthy term infants are thought to be benign. Furthermore, the impact of CMV on the composition of the hundreds of bioactive factors in human milk has not been tested. Here, we utilize a cohort of exclusively breastfeeding full-term mother-infant pairs to test for differences in the milk transcriptome and metabolome associated with CMV, and the impact of CMV in breast milk on the infant gut microbiome and infant growth. We find upregulation of the indoleamine 2,3-dioxygenase (IDO) tryptophan-to-kynurenine metabolic pathway in CMV+ milk samples, and that CMV+ milk is associated with decreased Bifidobacterium in the infant gut. Our data indicate two opposing CMV-associated effects on infant growth; with kynurenine positively correlated, and CMV viral load negatively correlated, with infant weight-for-length at 1 month of age. These results suggest CMV transmission, CMV-related changes in milk composition, or both may be modulators of full-term infant development.


Subject(s)
Breast Feeding , Cytomegalovirus Infections , Cytomegalovirus , Gastrointestinal Microbiome , Kynurenine , Milk, Human , Humans , Milk, Human/virology , Milk, Human/microbiology , Milk, Human/chemistry , Female , Cytomegalovirus Infections/transmission , Cytomegalovirus Infections/virology , Infant , Infant, Newborn , Kynurenine/metabolism , Kynurenine/analysis , Viral Load , Male , Adult , Indoleamine-Pyrrole 2,3,-Dioxygenase/metabolism , Tryptophan/metabolism , Tryptophan/analysis , Metabolome
18.
Thorax ; 68(12): 1122-30, 2013 Dec.
Article in English | MEDLINE | ID: mdl-23882022

ABSTRACT

BACKGROUND: Patients with allergic asthma have exacerbations which are frequently caused by rhinovirus infection. The antiviral tryptophan-catabolising enzyme indoleamine 2,3-dioxygenase (IDO) is induced by interferon-γ and suppressed by Th2 mediators interleukin (IL)-4 and IL-13. We hypothesised that local IDO activity after viral airway infection is lower in patients with allergic asthma than in healthy controls. OBJECTIVE: To determine whether IDO activity differs between patients with allergic asthma and healthy individuals before and after rhinovirus infection. METHODS: Healthy individuals and patients with allergic asthma were experimentally infected with low-dose (10 TCID50) rhinovirus 16. Blood, bronchoalveolar lavage fluid and exhaled breath condensate (for mass spectrometry by UPLC-MS/MS) were obtained before and after rhinovirus challenge. RESULTS: IDO activity was not induced by rhinovirus infection in either group, despite increases in cold scores. However, baseline pulmonary IDO activity was lower in patients with allergic asthma than in healthy individuals. In contrast, systemic tryptophan and its catabolites were markedly higher in patients with allergic asthma. Moreover, systemic quinolinic acid and tryptophan were associated with eosinophil cationic protein (r=0.43 and r=0.78, respectively) and eosinophils (r=0.38 and r=0.58, respectively) in bronchoalveolar lavage fluid and peak asthma symptom scores after rhinovirus challenge (r=0.53 and r=0.64, respectively). CONCLUSIONS: Rhinovirus infection by itself induces no IDO activity, but the reduced pulmonary IDO activity in patients with allergic asthma at baseline may underlie a reduced control of viral infections. Notably, the enhanced systemic catabolism of tryptophan in patients with allergic asthma was strongly related to the outcome of rhinovirus challenge in asthma and may serve as a prognostic factor.


Subject(s)
Asthma/complications , Asthma/enzymology , Indoleamine-Pyrrole 2,3,-Dioxygenase/metabolism , Picornaviridae Infections/complications , Rhinovirus , Tryptophan/blood , Adult , Asthma/physiopathology , Biomarkers/analysis , Biomarkers/blood , Breath Tests , Bronchoalveolar Lavage Fluid/chemistry , Bronchoalveolar Lavage Fluid/cytology , Case-Control Studies , Cytokines/analysis , Disease Progression , Eosinophil Cationic Protein/analysis , Eosinophils , Female , Humans , Kynurenine/analysis , Kynurenine/blood , Male , Nitric Oxide/analysis , Peroxidase/analysis , Picornaviridae Infections/virology , Prospective Studies , Quinolinic Acid/analysis , Quinolinic Acid/blood , Tryptophan/analysis , Young Adult , ortho-Aminobenzoates/analysis , ortho-Aminobenzoates/blood
19.
Anal Biochem ; 443(2): 222-31, 2013 Dec 15.
Article in English | MEDLINE | ID: mdl-24036037

ABSTRACT

An imbalance in tryptophan (TRP) metabolites is associated with several neurological and inflammatory disorders. Therefore, analytical methods allowing for simultaneous quantification of TRP and its major metabolites would be highly desirable, and may be valuable as potential biomarkers. We have developed a HPLC method for concurrent quantitative determination of tryptophan, serotonin, 5-hydroxyindoleacetic acid, kynurenine, and kynurenic acid in tissue and fluids. The method utilizes the intrinsic spectroscopic properties of TRP and its metabolites that enable UV absorbance and fluorescence detection by HPLC, without additional labeling. The origin of the peaks related to analytes of interest was confirmed by UV-Vis spectral patterns using a PDA detector and mass spectrometry. The developed methods were validated in rabbit fetal brain and amniotic fluid at gestational day 29. Results are in excellent agreement with those reported in the literature for the same regions. This method allows for rapid quantification of tryptophan and four of its major metabolites concurrently. A change in the relative ratios of these metabolites can provide important insights in predicting the presence and progression of neuroinflammation in disorders such as cerebral palsy, autism, multiple sclerosis, Alzheimer disease, and schizophrenia.


Subject(s)
Hydroxyindoleacetic Acid/analysis , Kynurenic Acid/analysis , Kynurenine/analysis , Serotonin/analysis , Tryptophan/analysis , Tryptophan/metabolism , Animals , Brain/metabolism , Brain Chemistry , Chromatography, High Pressure Liquid/methods , Hydroxyindoleacetic Acid/metabolism , Kynurenic Acid/metabolism , Kynurenine/metabolism , Limit of Detection , Rabbits , Serotonin/metabolism , Tandem Mass Spectrometry/methods
20.
J Periodontal Res ; 48(6): 733-9, 2013 Dec.
Article in English | MEDLINE | ID: mdl-23488665

ABSTRACT

BACKGROUND AND OBJECTIVE: Indoleamine 2,3-dioxygenase (IDO) is a tryptophan-oxidizing enzyme with immune-inhibitory effects. The aim of this study was to investigate the expression of IDO by lipopolysaccharide (LPS), a component of gram-negative bacteria, in human periodontal ligament (PDL) cells. MATERIAL AND METHODS: Human PDL cells and gingival fibroblasts (GFs) were prepared from explants of human PDLs and from gingival tissues of clinically healthy donors, respectively. Real-time RT-PCR, western blotting and the IDO enzyme assay were performed to determine the expression of IDO following LPS treatment of cells. LPS was injected into mice tail veins to evaluate the effects of LPS in vivo in the maxillary first molar. Immunofluorescence staining and histological analysis were followed to localize IDO in mouse PDL. RESULTS: The level of expression of IDO mRNA in primary human PDL cells after LPS treatment was increased in a dose-dependent manner, reaching a peak 8 h after LPS treatment. The expression and activities of IDO protein were significantly increased in comparison with those of the control. In addition, the increased production of kynurenine in culture medium was observed 72 h after LPS treatment. In the immunofluorescence findings, stronger immunoreactivities were shown in PDL than in gingival tissues in the maxillae. In accordance with the immunofluorescence findings, LPS treatment induced a strong up-regulation of IDO mRNA in human PDL cells, whereas human GFs showed only a weak response to LPS. CONCLUSION: These results clearly show that IDO was induced by LPS in primary human PDL cells, suggesting that PDL might be involved in the regulation of oral inflammatory disease.


Subject(s)
Indoleamine-Pyrrole 2,3,-Dioxygenase/drug effects , Lipopolysaccharides/pharmacology , Periodontal Ligament/enzymology , Animals , Cells, Cultured , Dose-Response Relationship, Drug , Escherichia coli , Fibroblasts/drug effects , Fibroblasts/enzymology , Fluorescent Antibody Technique , Gingiva/cytology , Gingiva/drug effects , Gingiva/enzymology , Humans , Interleukin-1beta/drug effects , Kynurenine/analysis , Kynurenine/drug effects , Mice , Mice, Inbred C57BL , Mice, Inbred Strains , Periodontal Ligament/cytology , Periodontal Ligament/drug effects , Specific Pathogen-Free Organisms , Time Factors , Up-Regulation
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