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1.
Proc Natl Acad Sci U S A ; 114(46): E9821-E9828, 2017 11 14.
Article in English | MEDLINE | ID: mdl-29087332

ABSTRACT

Nucleotidyl cyclases, including membrane-integral and soluble adenylyl and guanylyl cyclases, are central components in a wide range of signaling pathways. These proteins are architecturally diverse, yet many of them share a conserved feature, a helical region that precedes the catalytic cyclase domain. The role of this region in cyclase dimerization has been a subject of debate. Although mutations within this region in various cyclases have been linked to genetic diseases, the molecular details of their effects on the enzymes remain unknown. Here, we report an X-ray structure of the cytosolic portion of the membrane-integral adenylyl cyclase Cya from Mycobacterium intracellulare in a nucleotide-bound state. The helical domains of each Cya monomer form a tight hairpin, bringing the two catalytic domains into an active dimerized state. Mutations in the helical domain of Cya mimic the disease-related mutations in human proteins, recapitulating the profiles of the corresponding mutated enzymes, adenylyl cyclase-5 and retinal guanylyl cyclase-1. Our experiments with full-length Cya and its cytosolic domain link the mutations to protein stability, and the ability to induce an active dimeric conformation of the catalytic domains. Sequence conservation indicates that this domain is an integral part of cyclase machinery across protein families and species. Our study provides evidence for a role of the helical domain in establishing a catalytically competent dimeric cyclase conformation. Our results also suggest that the disease-associated mutations in the corresponding regions of human nucleotidyl cyclases disrupt the normal helical domain structure.


Subject(s)
Adenylyl Cyclases/chemistry , Adenylyl Cyclases/metabolism , Catalytic Domain , Mycobacterium avium Complex/enzymology , Protein Conformation , Adenylyl Cyclases/genetics , Amino Acid Substitution , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Conserved Sequence , Crystallography, X-Ray , Cytosol/enzymology , Dimerization , Enzyme Activation , Enzyme Stability , Guanylate Cyclase/chemistry , Guanylate Cyclase/genetics , Humans , Models, Molecular , Mutagenesis, Site-Directed , Mutant Proteins/chemistry , Mutant Proteins/genetics , Mutant Proteins/metabolism , Mycobacterium avium Complex/genetics , Receptors, Cell Surface/chemistry , Receptors, Cell Surface/genetics , Sequence Alignment , Sequence Analysis, Protein
2.
Tuberculosis (Edinb) ; 147: 102519, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38754247

ABSTRACT

BACKGROUND: Drug susceptibility testing (DST) protocol of omadacycline against non-tuberculous mycobacteria has not yet been established. We developed a method to accurately determine MIC omadacycline MIC against Mycobacterium abscessus (Mab), Mycobacterium avium-complex (MAC), and Mycobacterium kansasii (Mkn). METHODS: First, we identified the oxyrase concentration not affecting Mab, MAC, and Mkn growth followed by omadacycline MIC experiments with and without oxyrase using reference and clinical strains. RESULTS: Oxyrase 0.5 % (v/v) stabilized omadacycline in the culture medium. The median omadacycline MIC was 1 mg/L for Mab and 8 mg/L for Mkn. For MAC, the median omadacycline MIC was 2 mg/L for M. avium, 256 mg/L for M. intracellulare, and 4 mg/L for M. chimaera (p < 0.0001). Wilcoxon matched-pairs signed rank test revealed statistically lower MICs with oxyrase for all MAC subspecies (p < 0.0001), all Mab subspecies (p < 0.0001), and Mkn (p = 0.0002). The decrease in MICs with oxyrase was 17/18 of Mab, 14/19 of Mkn, 8/8 of M. avium, 4/5 M. chimera, but only 11/18 of M. intracellulare (p < 0.013). CONCLUSION: Use of 0.5 % oxyrase could be a potential solution to reliable and reproducible omadacycline MIC of Mab. However, oxyrase demonstrated a variable effect in reducing MICs against MAC and Mkn.


Subject(s)
Antitubercular Agents , Microbial Sensitivity Tests , Mycobacterium abscessus , Tetracyclines , Microbial Sensitivity Tests/methods , Humans , Antitubercular Agents/pharmacology , Tetracyclines/pharmacology , Mycobacterium abscessus/drug effects , Mycobacterium abscessus/enzymology , Mycobacterium kansasii/drug effects , Mycobacterium kansasii/enzymology , Mycobacterium avium Complex/drug effects , Mycobacterium avium Complex/enzymology , Nontuberculous Mycobacteria/drug effects , Nontuberculous Mycobacteria/enzymology , Mycobacterium Infections, Nontuberculous/microbiology , Mycobacterium Infections, Nontuberculous/drug therapy
3.
J Exp Med ; 204(1): 73-8, 2007 Jan 22.
Article in English | MEDLINE | ID: mdl-17227913

ABSTRACT

Thioamide drugs, ethionamide (ETH) and prothionamide (PTH), are clinically effective in the treatment of Mycobacterium tuberculosis, M. leprae, and M. avium complex infections. Although generally considered second-line drugs for tuberculosis, their use has increased considerably as the number of multidrug resistant and extensively drug resistant tuberculosis cases continues to rise. Despite the widespread use of thioamide drugs to treat tuberculosis and leprosy, their precise mechanisms of action remain unknown. Using a cell-based activation method, we now have definitive evidence that both thioamides form covalent adducts with nicotinamide adenine dinucleotide (NAD) and that these adducts are tight-binding inhibitors of M. tuberculosis and M. leprae InhA. The crystal structures of the inhibited M. leprae and M. tuberculosis InhA complexes provide the molecular details of target-drug interactions. The purified ETH-NAD and PTH-NAD adducts both showed nanomolar Kis against M. tuberculosis and M. leprae InhA. Knowledge of the precise structures and mechanisms of action of these drugs provides insights into designing new drugs that can overcome drug resistance.


Subject(s)
Ethionamide/pharmacology , Leprosy/drug therapy , Prothionamide/pharmacology , Tuberculosis/drug therapy , Antitubercular Agents/chemistry , Antitubercular Agents/metabolism , Antitubercular Agents/pharmacology , Bacterial Proteins/antagonists & inhibitors , Crystallography, X-Ray , Drug Design , Drug Resistance, Multiple, Bacterial , Ethionamide/chemistry , Ethionamide/metabolism , Humans , In Vitro Techniques , Leprostatic Agents/chemistry , Leprostatic Agents/metabolism , Leprostatic Agents/pharmacology , Models, Molecular , Mycobacterium avium Complex/drug effects , Mycobacterium avium Complex/enzymology , Mycobacterium avium-intracellulare Infection/drug therapy , Mycobacterium leprae/drug effects , Mycobacterium leprae/enzymology , Mycobacterium tuberculosis/drug effects , Mycobacterium tuberculosis/enzymology , NAD/chemistry , NAD/metabolism , Oxidoreductases/antagonists & inhibitors , Prothionamide/chemistry , Prothionamide/metabolism , Tuberculosis, Multidrug-Resistant/drug therapy
4.
Chemotherapy ; 58(5): 341-8, 2012.
Article in English | MEDLINE | ID: mdl-23171694

ABSTRACT

BACKGROUND: Intrinsic multidrug resistance of the Mycobacterium avium-intracellulare complex presents a serious problem in the treatment of the diseases caused by these bacteria. Recently, it was shown that deletion of a polyketide synthase, Pks12, in an M. avium laboratory strain decreases this intrinsic resistance. METHODS: We investigated Pks12 expression and its enzymatic activity in 9 clinical isolates of M. intracellulare, and compared their drug susceptibilities to 4 drugs. Also, we made pks12-disrupted M. bovis bacillus Calmette-Guérin (BCG) mutant and its complemented strain. Using these BCG and M. intracellulare strains, we observed intracellular accumulation of ethidium bromide (EtBr). RESULTS: We found positive correlations between Pks12 and drug resistance for all of the antibiotics tested. The drug susceptible M. intracellulare strain showed higher EtBr accumulation. Consistent with this, EtBr was much more accumulated in pks12-disrupted BCG than wild-type or the complemented strains. CONCLUSIONS: Collectively, these results suggest that Pks12 controls the multidrug resistance in part through intracellular drug accumulation.


Subject(s)
Mycobacterium avium Complex/enzymology , Polyketide Synthases/metabolism , Anti-Bacterial Agents/pharmacology , Drug Resistance, Multiple, Bacterial/drug effects , Ethidium/chemistry , Humans , Microbial Sensitivity Tests , Mycobacterium avium Complex/drug effects , Mycobacterium avium Complex/isolation & purification , Mycobacterium avium-intracellulare Infection/microbiology , Mycobacterium bovis/drug effects , Mycobacterium bovis/enzymology , Mycobacterium bovis/isolation & purification , Polyketide Synthases/genetics
5.
J Bacteriol ; 192(21): 5700-8, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20817766

ABSTRACT

Glycopeptidolipids (GPLs) are one of the major glycolipid components present on the surface of Mycobacterium avium complex (MAC) that belong to opportunistic pathogens distributed in the natural environment. The serovars of MAC, up to around 30 types, are defined by the variable oligosaccharide portions of the GPLs. Epidemiological studies show that serovar 4 is the most prevalent type, and the prognosis of pulmonary disease caused by serovar 4 is significantly worse than that caused by other serovars. However, little is known about the biosynthesis of serovar 4-specific GPL, particularly the formation of the oligosaccharide portion that determines the properties of serovar 4. To investigate the biosynthesis of serovar 4-specific GPL, we focused on one segment that included functionally unknown genes in the GPL biosynthetic gene cluster of a serovar 4 strain. In this segment, a putative hemolytic protein gene, hlpA, and its downstream gene were found to be responsible for the formation of the 4-O-methyl-rhamnose residue, which is unique to serovar 4-specific GPL. Moreover, functional characterization of the hlpA gene revealed that it encodes a rhamnosyltransferase that transfers a rhamnose residue via 1→4 linkage to a fucose residue of serovar 2-specific GPL, which is a key pathway leading to the synthesis of oligosaccharide of serovar 4-specific GPL. These findings may provide clues to understanding the biological role of serovar 4-specific GPL in MAC pathogenicity and may also provide new insights into glycosyltransferase, which generates structural and functional diversity of GPLs.


Subject(s)
Bacterial Proteins/metabolism , Gene Expression Regulation, Bacterial/physiology , Glycolipids/biosynthesis , Glycopeptides/biosynthesis , Mycobacterium avium Complex/enzymology , Bacterial Proteins/genetics , Carbohydrate Conformation , Glycosyltransferases/genetics , Glycosyltransferases/metabolism , Molecular Sequence Data , Mycobacterium avium Complex/classification , Mycobacterium avium Complex/genetics , Mycobacterium avium Complex/metabolism , Serotyping
6.
Protein Sci ; 28(9): 1720-1726, 2019 09.
Article in English | MEDLINE | ID: mdl-31306520

ABSTRACT

Lon protease is evolutionarily conserved in prokaryotes and eukaryotic organelles. The primary function of Lon is to selectively degrade abnormal and certain regulatory proteins to maintain the homeostasis in vivo. Lon mainly consists of three functional domains and the N-terminal domain is required for the substrate selection and recognition. However, the precise contribution of the N-terminal domain remains elusive. Here, we determined the crystal structure of the N-terminal 192-residue construct of Lon protease from Mycobacterium avium complex at 2.4 å resolution,and measured NMR-relaxation parameters of backbones. This structure consists of two subdomains, the ß-strand rich N-terminal subdomain and the five-helix bundle of C-terminal subdomain, connected by a flexible linker,and is similar to the overall structure of the N domain of Escherichia coli Lon even though their sequence identity is only 26%. The obtained NMR-relaxation parameters reveal two stabilized loops involved in the structural packing of the compact N domain and a turn structure formation. The performed homology comparison suggests that structural and sequence variations in the N domain may be closely related to the substrate selectivity of Lon variants. Our results provide the structure and dynamics characterization of a new Lon N domain, and will help to define the precise contribution of the Lon N-terminal domain to the substrate recognition.


Subject(s)
Mycobacterium avium Complex/enzymology , Protease La/chemistry , Bacterial Proteins/chemistry , Crystallography, X-Ray , Models, Molecular , Mycobacterium avium Complex/chemistry , Protein Domains , Protein Structure, Tertiary
7.
J Bacteriol ; 190(3): 1064-71, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18024513

ABSTRACT

The Mycobacterium avium complex is distributed ubiquitously in the environment. It is an important cause of pulmonary and extrapulmonary diseases in humans and animals. The species in this complex produce polar glycopeptidolipids (GPLs); of particular interest is their serotype-specific antigenicity. Several reports have described that GPL structure may play an important role in bacterial physiology and pathogenesis and in the host immune response. Recently, we determined the complete structure of the GPL derived from Mycobacterium intracellulare serotype 7 and characterized the serotype 7 GPL-specific gene cluster. The structure of serotype 7 GPL closely resembles that of serotype 12 GPL, except for O methylation. In the present study, we isolated and characterized the serotype 12-specific gene cluster involved in glycosylation of the GPL. Ten open reading frames (ORFs) and one pseudogene were observed in the cluster. The genetic organization of the serotype 12-specific gene cluster resembles that of the serotype 7-specific gene cluster, but two novel ORFs (orfA and orfB) encoding putative methyltransferases are present in the cluster. Functional analyses revealed that orfA and orfB encode methyltransferases that synthesize O-methyl groups at the C-4 position in the rhamnose residue next to the terminal hexose and at the C-3 position in the terminal hexose, respectively. Our results show that these two methyltransferase genes determine the structural difference of serotype 12-specific GPL from serotype 7-specific GPL.


Subject(s)
Glycolipids/chemistry , Glycopeptides/biosynthesis , Glycopeptides/chemistry , Methyltransferases/genetics , Mycobacterium avium Complex/classification , Mycobacterium avium Complex/enzymology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Gas Chromatography-Mass Spectrometry , Glycolipids/biosynthesis , Methyltransferases/metabolism , Molecular Sequence Data , Multigene Family , Mycobacterium avium Complex/chemistry , Mycobacterium avium Complex/genetics , Open Reading Frames/genetics , Sequence Analysis, DNA , Serotyping , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
8.
Future Microbiol ; 12: 595-607, 2017 06.
Article in English | MEDLINE | ID: mdl-28555497

ABSTRACT

AIM: Mycobacterium avium infections, especially in immune-compromised individuals, present a significant challenge as therapeutic options are limited. In this study, we investigated if M. avium genome encodes nonclassical transpeptidases and if newer carbapenems are effective against this mycobacteria. MATERIALS & METHODS: Biochemical and microbiological approaches were used to identify and characterize a nonclassical transpeptidase, namely L,D-transpeptidase, in M. avium. RESULTS & CONCLUSION: We describe the biochemical and physiological attributes of a L,D-transpeptidase in M. avium, LdtMav2. Suggestive of a constitutive requirement, levels of LdtMav2, a L,D-transpeptidase in M. avium, remain constant during exponential and stationary phases of growth. Among ß-lactam antibacterials, only a subset of carbapenems inhibit LdtMav2 and tebipenem, a new oral carbapenem, inhibits growth of M. avium.


Subject(s)
Anti-Bacterial Agents/pharmacology , Carbapenems/pharmacology , Mycobacterium avium Complex/drug effects , Mycobacterium avium Complex/enzymology , Peptidyl Transferases/chemistry , Peptidyl Transferases/genetics , Crystallography, X-Ray , Drug Resistance, Multiple, Bacterial , Genome, Bacterial , Mycobacterium avium Complex/genetics , Mycobacterium avium Complex/growth & development , Peptidyl Transferases/isolation & purification , Peptidyl Transferases/metabolism , Sequence Analysis, DNA , beta-Lactams/pharmacology
9.
Biochimie ; 87(6): 557-63, 2005 Jun.
Article in English | MEDLINE | ID: mdl-15908099

ABSTRACT

A number of genes similar to mammalian Class III nucleotide cyclases are found in mycobacteria, and biochemical characterization of some of these proteins has indicated that they code for adenylyl cyclases, with properties similar to the mammalian enzymes. Our earlier bioinformatic analysis had predicted that the Rv1120c gene in Mycobacterium tuberculosis is a pseudogene, while analysis of the genome of Mycobacterium avium indicated the presence of a functional ortholog. We therefore cloned and expressed Rv1120c and its ortholog from M. avium, Ma1120, in Escherichia coli, and find that while the protein from M. tuberculosis is misfolded and found in inclusion bodies, Ma1120 is expressed to high levels as a functional adenylyl cyclase. Sequence analysis of Ma1120 indicates interesting variations in critical amino acids that are known to be important for catalytic activity. Ma1120 is maximally active in the presence of MnATP as substrate ((app)Km approximately 400 microM), and is inhibited by P-site inhibitors (IC50 of 2',5'-dideoxy-3'-adenosine triphosphate approximately 730 nM) and tyrphostins (IC50 approximately 36 microM) in a manner similar to the mammalian enzymes. This therefore represents the first Class III cyclase biochemically characterized from M. avium, and the absence of a functional ortholog in M. tuberculosis suggests a unique role for this enzyme in M. avium.


Subject(s)
Adenylyl Cyclases/genetics , Mycobacterium avium Complex/enzymology , Mycobacterium avium Complex/genetics , Mycobacterium tuberculosis/enzymology , Mycobacterium tuberculosis/genetics , Pseudogenes , Adenylyl Cyclase Inhibitors , Adenylyl Cyclases/isolation & purification , Amino Acid Sequence , Cloning, Molecular , Deoxyadenine Nucleotides/pharmacology , Genes, Bacterial , Inclusion Bodies/enzymology , Isoenzymes/antagonists & inhibitors , Isoenzymes/genetics , Isoenzymes/isolation & purification , Kinetics , Molecular Sequence Data , Protein Folding , Sequence Alignment , Tyrphostins/pharmacology
10.
FEMS Microbiol Lett ; 58(1): 95-9, 1990 Jun 15.
Article in English | MEDLINE | ID: mdl-2118868

ABSTRACT

Water and soil samples were collected from natural habitats of the nine-banded armadillo and tested for the presence of acid-fast organisms by injection into the foot pads of experimental mice. Sixteen months post inoculation an acid-fast organism was isolated from the foot pad and spleen of one of the mice. The isolate exhibited diphenoloxidase activity as determined by its ability to convert D-3,4-dihydroxyphenylalanine to the corresponding quinone. The same organisms grown in vitro lacked detectable diphenoloxidase activity. However, diphenoloxidase activity was observed in acid-fast organisms harvested from spleen tissue of mice experimentally inoculated with a pure culture of the isolate. The environmental isolate was tentatively classed with the Mycobacterium avium-intracellulare complex.


Subject(s)
Catechol Oxidase/metabolism , Mycobacterium avium Complex/isolation & purification , Soil Microbiology , Water Microbiology , Animals , Hydrogen-Ion Concentration , Mice , Mice, Inbred BALB C , Mycobacterium avium Complex/enzymology , Mycobacterium leprae/enzymology
11.
FEMS Microbiol Lett ; 156(1): 69-78, 1997 Nov 01.
Article in English | MEDLINE | ID: mdl-9368362

ABSTRACT

Dihydrofolate reductase is an essential bacterial enzyme necessary for the maintenance of intracellular folate pools in a biochemically active reduced state. In this report, the Mycobacterium avium folA gene was identified by functional genetic complementation, sequenced, and expressed for the first time. It has an open reading frame of 543 bp with a G + C content of 73%. The translated polypeptide sequence shows 58% identity to the consensus sequence of the conserved regions from eight other bacterial dihydrofolate reductases. Recombinant M. avium dihydrofolate reductase was expressed actively in Escherichia coli, and SDS-PAGE analysis revealed a 20 kDa species, agreeable with that predicted from the polypeptide sequence:


Subject(s)
Genes, Bacterial , Mycobacterium avium Complex/enzymology , Mycobacterium avium Complex/genetics , Tetrahydrofolate Dehydrogenase/genetics , Amino Acid Sequence , Base Sequence , Cloning, Molecular , Conserved Sequence , DNA Primers/genetics , DNA, Bacterial/genetics , Escherichia coli/genetics , Gene Expression , Molecular Sequence Data , Molecular Weight , Open Reading Frames , Polymerase Chain Reaction , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid , Tetrahydrofolate Dehydrogenase/chemistry , Tetrahydrofolate Dehydrogenase/metabolism
12.
Kekkaku ; 66(8): 553-5, 1991 Aug.
Article in Japanese | MEDLINE | ID: mdl-1921096

ABSTRACT

The characterization of extracellular enzymatic activities of Mycobacterium avium and Mycobacterium intracellulare which were identified by DNA probe (Gen-Probe, Cal., USA) was carried out using the API ZYM system (API, La Balme Les Grottes, France). The enzymatic activities of M. avium were attributed to esterase (C4), esterase lipase (C8), leucin arylamidase, acid phosphatase and phosphoamidase. Enzymatic characterization of M. intracellulare was very similar to that of M. avium. However, M. intracellulare differed from M. avium in the following two points: (i) Alkaline phosphatase activity was demonstrated, (ii) Acid phosphatase activity was much stronger.


Subject(s)
Mycobacterium avium Complex/enzymology , Mycobacterium avium/enzymology , Acid Phosphatase/metabolism , Alkaline Phosphatase/metabolism , Humans
13.
Kekkaku ; 74(5): 447-52, 1999 May.
Article in Japanese | MEDLINE | ID: mdl-10386034

ABSTRACT

Beta-lactamase activity was determined using a nitrocefin disc method on 34 Mycobacterium tuberculosis (M. tuberculosis) strains and 13 nontuberculous mycobacteria strains. In the 34 M. tuberculosis strains, 23 strains showed beta-lactamase activity. In 10 Mycobacterium avium complex strains, no beta-lactamase activity was detected. In the Mycobacterium chelonae strains, all three strains examined showed strong beta-lactamase activity. No correlation was found between beta-lactamase activity and resistance to anti-tuberculous chemotherapeutic agents. Four patients who were persistently positive for multi-drug-resistant M. tuberculosis (MDR-TB) on sputum and positive in beta-lactamase activity, were treated with penicillin/beta-lactamase inhibitor combinations. In two cases, the trials were discontinued because of diarrhea; the trials were continued in the remaining two for four months, but the MDR-TB was positive during the course of the therapy. Effectiveness of the therapy with penicillin/beta-lactamase inhibitor combinations against M. tuberculosis was obscure, although many of M. tuberculosis examined showed beta-lactamase activity.


Subject(s)
Drug Therapy, Combination/therapeutic use , Mycobacterium avium Complex/enzymology , Mycobacterium chelonae/enzymology , Mycobacterium tuberculosis/enzymology , Penicillins/therapeutic use , Tuberculosis, Multidrug-Resistant/drug therapy , beta-Lactamase Inhibitors , Amoxicillin/therapeutic use , Ampicillin/therapeutic use , Clavulanic Acid/therapeutic use , Drug Resistance, Multiple , Enzyme Inhibitors/therapeutic use , Humans , Mycobacterium tuberculosis/isolation & purification , Sulbactam/therapeutic use , Tuberculosis, Multidrug-Resistant/microbiology , beta-Lactamases/metabolism
15.
Int J Syst Evol Microbiol ; 59(Pt 11): 2803-8, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19628609

ABSTRACT

An rpoB sequence-based evaluation of 100 Mycobacterium avium complex (MAC) clinical isolates led to the identification of five respiratory tract isolates that were potential representatives of three novel MAC species. Distinctive phenotypic features of isolates 62863 and 5356591(T) included a pseudomycelium morphology and both esterase and acid phosphatase activities. These two isolates exhibited sequence similarities of 99.8 % for the 16S rRNA gene, 86.3 and 86.1 % for 16S-23S rRNA gene internal transcribed spacer (ITS-1) sequence, 96.7 and 97.8 % for rpoB and 97.6 and 97.4 % for hsp65, respectively, with the type strain of Mycobacterium chimaera, the most closely related species. Isolates 3256799 and 5351974(T) lacked alpha-mannosidase and beta-glucosidase activities. They exhibited sequence similarities of 99.6 % for the 16S rRNA gene, 90.1 and 90.4 % for ITS-1, 97.8 % for rpoB and 98.0 and 98.1 % for hsp65, respectively, with the type strain of M. chimaera, the most closely related species. Isolate 4355387(T) lacked urease and alpha-glucosidase activities, but it exhibited valine arylamidase, cystine arylamidase and acid phosphatase activities. It had sequence similarities of 99.3 % for the 16S rRNA gene, 51.8 % for ITS-1, 97.1 % for rpoB and 97.8 % for hsp65 with the type strain of Mycobacterium colombiense, the most closely related species. A phylogenetic tree based on concatenated 16S rRNA gene, ITS-1, rpoB and hsp65 sequences showed the uniqueness of these five isolates as representatives of three novel species, with bootstrap values >/=95 % in all nodes. On the basis of these phenotypic and genetic characteristics, these five isolates are proposed as representatives of three novel MAC species: Mycobacterium marseillense sp. nov., with strain 5356591(T) (=CCUG 56325(T) =CIP 109828(T) =CSUR P30(T)) as the type strain; Mycobacterium timonense sp. nov., with strain 5351974(T) (=CCUG 56329(T) =CIP 109830(T) =CSUR P32(T)) as the type strain; and Mycobacterium bouchedurhonense sp. nov., with strain 4355387(T) (=CCUG 56331(T) =CIP 109827(T) =CSUR P34(T)) as the type strain.


Subject(s)
Mycobacterium avium Complex/classification , Mycobacterium avium Complex/isolation & purification , Mycobacterium avium-intracellulare Infection/microbiology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Humans , Molecular Sequence Data , Mycobacterium avium Complex/enzymology , Mycobacterium avium Complex/genetics , Phylogeny , RNA, Ribosomal, 16S/genetics , Respiratory System/microbiology
16.
Microbiology (Reading) ; 154(Pt 12): 3715-3723, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19047739

ABSTRACT

The Mycobacterium avium complex (MAC) comprises slowly growing mycobacteria responsible for opportunistic infections and zoonoses. The ability to speciate MAC isolates in the clinical microbiology laboratory is critical for determining the organism implicated in clinical disease and for epidemiological investigation of the source of infection. Investigation of a 711 bp variable fragment of rpoB flanked by the Myco-F/Myco-R primers found a 0.7-5.1 % divergence among MAC reference strains, with Mycobacterium chimaera and Mycobacterium intracellulare being the most closely related. Using a 0.7 % divergence cut-off, 83 % of 100 clinical isolates, which had been previously identified by phenotypic characteristics and 16S-23S rDNA intergenic spacer (ITS) probing, were identified as M. avium, 8 % as M. intracellulare and 2 % as M. chimaera. The uniqueness of seven isolates, exhibiting < 99.3 % rpoB sequence similarity with MAC reference strains, was confirmed by 16S rDNA, ITS and hsp65 sequencing and phylogenetic analyses. Partial rpoB gene sequencing using the Myco-F/Myco-R primers permits one-step identification of MAC isolates at the species level and the detection of potentially novel MAC species.


Subject(s)
Bacterial Typing Techniques , DNA-Directed RNA Polymerases/chemistry , Mycobacterium avium Complex/classification , Sequence Analysis, DNA , Animals , Bacterial Proteins/genetics , Chaperonin 60 , Chaperonins/genetics , DNA, Ribosomal Spacer/analysis , DNA-Directed RNA Polymerases/genetics , Humans , Molecular Sequence Data , Mycobacterium avium Complex/enzymology , Mycobacterium avium Complex/genetics , Mycobacterium avium-intracellulare Infection/microbiology , Phylogeny , RNA, Ribosomal, 16S/genetics , Species Specificity
17.
J Bacteriol ; 189(15): 5515-22, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17526707

ABSTRACT

The cell envelopes of several species of nontuberculous mycobacteria, including the Mycobacterium avium complex, contain glycopeptidolipids (GPLs) as major glycolipid components. GPLs are highly antigenic surface molecules, and their variant oligosaccharides define each serotype of the M. avium complex. In the oligosaccharide portion of GPLs, the fucose residue is one of the major sugar moieties, but its biosynthesis remains unclear. To elucidate it, we focused on the 5.0-kb chromosomal region of the M. avium complex that includes five genes, two of which showed high levels of similarity to the genes involved in fucose synthesis. For the characterization of this region by deletion and expression analyses, we constructed a recombinant Mycobacterium smegmatis strain that possesses the rtfA gene of the M. avium complex to produce serovar 1 GPL. The results revealed that the 5.0-kb chromosomal region is responsible for the addition of the fucose residue to serovar 1 GPL and that the three genes mdhtA, merA, and gtfD are indispensable for the fucosylation. Functional characterization revealed that the gtfD gene encodes a glycosyltransferase that transfers a fucose residue via 1-->3 linkage to a rhamnose residue of serovar 1 GPL. The other two genes, mdhtA and merA, contributed to the formation of the fucose residue and were predicted to encode the enzymes responsible for the synthesis of fucose from mannose based on their deduced amino acid sequences. These results indicate that the fucosylation pathway in GPL biosynthesis is controlled by a combination of the mdhtA, merA, and gtfD genes. Our findings may contribute to the clarification of the complex glycosylation pathways involved in forming the oligosaccharide portion of GPLs from the M. avium complex, which are structurally distinct.


Subject(s)
Bacterial Proteins/physiology , Fucose/biosynthesis , Glycolipids/biosynthesis , Mycobacterium avium Complex/genetics , Mycobacterium avium Complex/metabolism , Bacterial Proteins/genetics , Biosynthetic Pathways/genetics , Cell Membrane/chemistry , Fucose/chemistry , Fucose/metabolism , Gas Chromatography-Mass Spectrometry , Gene Deletion , Genes, Bacterial , Glucosyltransferases/genetics , Glucosyltransferases/physiology , Glycolipids/chemistry , Mannose/metabolism , Molecular Structure , Mycobacterium avium Complex/chemistry , Mycobacterium avium Complex/enzymology , Mycobacterium smegmatis/enzymology , Mycobacterium smegmatis/genetics , Mycobacterium smegmatis/metabolism , Oxidoreductases/genetics , Oxidoreductases/physiology , Rhamnose/metabolism
18.
Bioorg Med Chem ; 15(13): 4552-76, 2007 Jul 01.
Article in English | MEDLINE | ID: mdl-17451962

ABSTRACT

Tuberculosis is an increasing threat, owing to the spread of AIDS and to the development of resistance of the causative organism, Mycobacterium tuberculosis, to the currently available drugs. Dihydrofolate reductase (DHFR) is an important enzyme of the folate cycle; inhibition of DHFR inhibits growth and causes cell death. The crystal structure of M. tuberculosis DHFR revealed a glycerol tightly bound close to the binding site for the substrate dihydrofolate; this glycerol-binding motif is absent from the human enzyme. A series of pyrimidine-2,4-diamines was designed with a two-carbon tether between a glycerol-mimicking triol and the 6-position of the heterocycle; these compounds also carried aryl substituents at the 5-position. These, their diastereoisomers, analogues lacking two hydroxy groups and analogues lacking the two-carbon spacing linker were synthesised by acylation of the anions derived from phenylacetonitriles with ethyl (4S,5R)-4-benzyloxymethyl-2,2-dimethyl-1,3-dioxolane-4-propanoate, ethyl (4S,5S)-4-benzyloxymethyl-2,2-dimethyl-1,3-dioxolane-4-propanoate, tetrahydrooxepin-2-one and 2,3-O-isopropylidene-d-erythronolactone, respectively, to give the corresponding alpha-acylphenylacetonitriles. Formation of the methyl enol ethers, condensation with guanidine and deprotection gave the pyrimidine-2,4-diamines. Preliminary assay of the abilities of these compounds to inhibit the growth of TB5 Saccharomyces cerevisiae carrying the DHFR genes from M. tuberculosis, human and yeast indicated that 5-phenyl-6-((3R,4S)-3,4,5-trihydroxypentyl)pyrimidine-2,4-diamine selectively inhibited M. tuberculosis DHFR and had little effect on the human or yeast enzymes.


Subject(s)
Antitubercular Agents/chemical synthesis , Antitubercular Agents/pharmacology , Folic Acid Antagonists/chemical synthesis , Folic Acid Antagonists/pharmacology , Mycobacterium tuberculosis/drug effects , Mycobacterium tuberculosis/enzymology , Tetrahydrofolate Dehydrogenase/metabolism , Binding Sites/drug effects , Glycerol/metabolism , Humans , Indicators and Reagents , Magnetic Resonance Spectroscopy , Microbial Sensitivity Tests , Models, Molecular , Mycobacterium avium Complex/drug effects , Mycobacterium avium Complex/enzymology , Saccharomyces cerevisiae/drug effects , Structure-Activity Relationship
19.
Mol Microbiol ; 56(5): 1262-73, 2005 Jun.
Article in English | MEDLINE | ID: mdl-15882419

ABSTRACT

Mycobacterium avium is a major opportunistic pathogen of AIDS patients in the United States. The understanding of M. avium pathogenesis has been hampered by the inability to create gene knockouts by homologous recombination, an important mechanism for defining and characterizing virulence factors. In this study a functional methyltransferase D (mtfD) gene was deleted by allelic replacement in the M. avium strain 104. Methyltransferase D is involved in the methylation of glycopeptidolipids (GPLs); highly antigenic glycolipids found in copious amounts on the M. avium cell surface. Interestingly, the loss of mtfD resulted in M. avium 104 containing only the non-serotype specific GPL. Results also suggest that the mtfD encodes for a 3-O-methyltransferase. The absence of significant amounts of any serotype-specific GPLs as a consequence of mtfD deletion indicates that the synthesis of the core 3,4-di-O-methyl rhamnose is a prerequisite for synthesis of the serotype-specific GPLs. Macrophages infected with the mtfD mutant show elevated production of tumour necrosis factor-alpha (TNF-alpha) and RANTES compared to control infections. In addition, the M. avium 104 mtfD mutant exhibits decreased ability to survive/proliferate in mouse liver and lung compared to wild-type 104, as assessed by bacterial counts. Importantly, the mtfD mutant complemented with a wild-type mtfD gene maintained an infection level similar to wild-type. These experiments demonstrate that the loss of mtfD results in a M. avium 104 strain, which preferentially activates macrophages in vitro and shows attenuated virulence in mice. Together our data support a role for GPLs in M. avium pathogenesis.


Subject(s)
Genes, Bacterial/physiology , Glycolipids/metabolism , Glycopeptides/metabolism , Methyltransferases/metabolism , Mycobacterium avium Complex/enzymology , Mycobacterium avium Complex/pathogenicity , Animals , Antigens, Bacterial , Cells, Cultured , Chemokine CCL5/analysis , Colony Count, Microbial , Disease Models, Animal , Gene Deletion , Genetic Complementation Test , Liver/microbiology , Lung/microbiology , Macrophages/immunology , Macrophages/microbiology , Methyltransferases/genetics , Mice , Mycobacterium avium Complex/genetics , Mycobacterium avium-intracellulare Infection/microbiology , Tuberculosis/microbiology , Tumor Necrosis Factor-alpha/analysis , Virulence/genetics
20.
Int J Syst Bacteriol ; 40(1): 66-70, 1990 Jan.
Article in English | MEDLINE | ID: mdl-2223599

ABSTRACT

A rapid (3-h) arylsulfatase assay for cell suspensions of mycobacteria, in which p-nitrophenyl sulfate is used as the substrate, was developed. Arylsulfatase activity was found in cell suspensions of representative strains of Mycobacterium avium, Mycobacterium intracellulare, and Mycobacterium scrofulaceum grown without the substrate in either Middlebrook 7H9 medium containing 0.2% (wt/vol) glucose and 0.05% (vol/vol) Tween 80 or Dubos broth medium, but was absent in cells grown in a low-pH, minimal medium containing 1% (vol/vol) Tween 80 as the sole carbon source. The levels of arylsulfatase activity of representatives of all three species were equal whether the activity was measured at pH 5.5, 6.5, or 7.5 and whether the cells were suspended in phosphate or Tris buffer. The addition of high levels of sulfate (present in the low-pH, Tween 80-containing medium) to Middlebrook 7H9 medium resulted in significantly lower levels of arylsulfatase activity in strains of M. scrofulaceum, but did not affect the levels in either M. avium or M. intracellulare. The levels of arylsulfatase activity were highest in M. avium, intermediate in M. intracellulare, and lowest in M. scrofulaceum strains. Polyacrylamide gel electrophoresis of crude extracts from late-log-phase cells of representatives of each species produced activity bands of unique mobility (one in M. avium, three in M. intracellulare [82, 5, and 13%], and two in M. scrofulaceum [60 and 40%]).


Subject(s)
Arylsulfatases/analysis , Bacterial Proteins/analysis , Mycobacterium avium Complex/enzymology , Mycobacterium avium/enzymology , Mycobacterium scrofulaceum/enzymology , Hydrogen-Ion Concentration , Nitrobenzenes , Species Specificity , Subcellular Fractions/enzymology , Substrate Specificity
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