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1.
Nature ; 609(7927): 605-610, 2022 09.
Article in English | MEDLINE | ID: mdl-35768502

ABSTRACT

Auxins are hormones that have central roles and control nearly all aspects of growth and development in plants1-3. The proteins in the PIN-FORMED (PIN) family (also known as the auxin efflux carrier family) are key participants in this process and control auxin export from the cytosol to the extracellular space4-9. Owing to a lack of structural and biochemical data, the molecular mechanism of PIN-mediated auxin transport is not understood. Here we present biophysical analysis together with three structures of Arabidopsis thaliana PIN8: two outward-facing conformations with and without auxin, and one inward-facing conformation bound to the herbicide naphthylphthalamic acid. The structure forms a homodimer, with each monomer divided into a transport and scaffold domain with a clearly defined auxin binding site. Next to the binding site, a proline-proline crossover is a pivot point for structural changes associated with transport, which we show to be independent of proton and ion gradients and probably driven by the negative charge of the auxin. The structures and biochemical data reveal an elevator-type transport mechanism reminiscent of bile acid/sodium symporters, bicarbonate/sodium symporters and sodium/proton antiporters. Our results provide a comprehensive molecular model for auxin recognition and transport by PINs, link and expand on a well-known conceptual framework for transport, and explain a central mechanism of polar auxin transport, a core feature of plant physiology, growth and development.


Subject(s)
Arabidopsis Proteins , Arabidopsis , Indoleacetic Acids , Membrane Transport Proteins , Antiporters/metabolism , Arabidopsis/chemistry , Arabidopsis/metabolism , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/metabolism , Bicarbonates/metabolism , Bile Acids and Salts/metabolism , Binding Sites , Biological Transport , Herbicides/metabolism , Indoleacetic Acids/chemistry , Indoleacetic Acids/metabolism , Membrane Transport Proteins/chemistry , Membrane Transport Proteins/metabolism , Phthalimides/metabolism , Plant Growth Regulators/chemistry , Plant Growth Regulators/metabolism , Proline/metabolism , Protein Domains , Protein Multimerization , Protons , Sodium/metabolism , Symporters/metabolism
2.
Proc Natl Acad Sci U S A ; 121(26): e2313683121, 2024 Jun 25.
Article in English | MEDLINE | ID: mdl-38905237

ABSTRACT

Strigolactones (SLs) are plant apocarotenoids with diverse roles and structures. Canonical SLs, widespread and characterized by structural variations in their tricyclic lactone (ABC-ring), are classified into two types based on C-ring configurations. The steric C-ring configuration emerges during the BC-ring closure, downstream of the biosynthetic intermediate, carlactonoic acid (CLA). Most plants produce either type of canonical SLs stereoselectively, e.g., tomato (Solanum lycopersicum) yields orobanchol with an α-oriented C-ring. The mechanisms driving SL structural diversification are partially understood, with limited insight into functional implications. Furthermore, the exact molecular mechanism for the stereoselective BC-ring closure reaction is yet to be known. We identified an enzyme, the stereoselective BC-ring-forming factor (SRF), from the dirigent protein (DIR) family, specifically the DIR-f subfamily, whose biochemical function had not been characterized, making it a key enzyme in stereoselective canonical SL biosynthesis with the α-oriented C-ring. We first confirm the precise catalytic function of the tomato cytochrome P450 SlCYP722C, previously shown to be involved in orobanchol biosynthesis [T. Wakabayashi et al., Sci. Adv. 5, eaax9067 (2019)], to convert CLA to 18-oxocarlactonoic acid. We then show that SRF catalyzes the stereoselective BC-ring closure reaction of 18-oxocarlactonoic acid, forming orobanchol. Our methodology combines experimental and computational techniques, including SRF structure prediction and conducting molecular dynamics simulations, suggesting a catalytic mechanism based on the conrotatory 4π-electrocyclic reaction for the stereoselective BC-ring formation in orobanchol. This study sheds light on the molecular basis of how plants produce SLs with specific stereochemistry in a controlled manner.


Subject(s)
Lactones , Lactones/metabolism , Lactones/chemistry , Stereoisomerism , Solanum lycopersicum , Plant Proteins/metabolism , Plant Proteins/chemistry , Plant Growth Regulators/chemistry , Plant Growth Regulators/metabolism
3.
Nature ; 586(7828): 311-316, 2020 10.
Article in English | MEDLINE | ID: mdl-32788727

ABSTRACT

Salicylic acid (SA) is a plant hormone that is critical for resistance to pathogens1-3. The NPR proteins have previously been identified as SA receptors4-10, although how they perceive SA and coordinate hormonal signalling remain unknown. Here we report the mapping of the SA-binding core of Arabidopsis thaliana NPR4 and its ligand-bound crystal structure. The SA-binding core domain of NPR4 refolded with SA adopts an α-helical fold that completely buries SA in its hydrophobic core. The lack of a ligand-entry pathway suggests that SA binding involves a major conformational remodelling of the SA-binding core of NPR4, which we validated using hydrogen-deuterium-exchange mass spectrometry analysis of the full-length protein and through SA-induced disruption of interactions between NPR1 and NPR4. We show that, despite the two proteins sharing nearly identical hormone-binding residues, NPR1 displays minimal SA-binding activity compared to NPR4. We further identify two surface residues of the SA-binding core, the mutation of which can alter the SA-binding ability of NPR4 and its interaction with NPR1. We also demonstrate that expressing a variant of NPR4 that is hypersensitive to SA could enhance SA-mediated basal immunity without compromising effector-triggered immunity, because the ability of this variant to re-associate with NPR1 at high levels of SA remains intact. By revealing the structural mechanisms of SA perception by NPR proteins, our work paves the way for future investigation of the specific roles of these proteins in SA signalling and their potential for engineering plant immunity.


Subject(s)
Arabidopsis/metabolism , Plant Growth Regulators/metabolism , Salicylic Acid/metabolism , Arabidopsis/chemistry , Arabidopsis/immunology , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Crystallography, X-Ray , Deuterium Exchange Measurement , Ligands , Mass Spectrometry , Models, Molecular , Mutation , Plant Growth Regulators/chemistry , Plant Immunity , Protein Binding , Protein Domains/genetics , Salicylic Acid/chemistry , Signal Transduction
4.
J Biol Chem ; 299(12): 105456, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37949229

ABSTRACT

Plant hormones are small molecules that regulate plant growth, development, and responses to biotic and abiotic stresses. They are specifically recognized by the binding site of their receptors. In this work, we resolved the binding pathways for eight classes of phytohormones (auxin, jasmonate, gibberellin, strigolactone, brassinosteroid, cytokinin, salicylic acid, and abscisic acid) to their canonical receptors using extensive molecular dynamics simulations. Furthermore, we investigated the role of water displacement and reorganization at the binding site of the plant receptors through inhomogeneous solvation theory. Our findings predict that displacement of water molecules by phytohormones contributes to free energy of binding via entropy gain and is associated with significant free energy barriers for most systems analyzed. Also, our results indicate that displacement of unfavorable water molecules in the binding site can be exploited in rational agrochemical design. Overall, this study uncovers the mechanism of ligand binding and the role of water molecules in plant hormone perception, which creates new avenues for agrochemical design to target plant growth and development.


Subject(s)
Plant Growth Regulators , Plants , Water , Agrochemicals/chemistry , Agrochemicals/metabolism , Plant Growth Regulators/chemistry , Plant Growth Regulators/classification , Plant Growth Regulators/metabolism , Plants/metabolism , Thermodynamics , Water/chemistry , Water/metabolism , Solvents/chemistry , Solvents/metabolism , Binding Sites , Ligands , Drug Design , Plant Development , Protein Binding
5.
Chembiochem ; 25(12): e202400133, 2024 Jun 17.
Article in English | MEDLINE | ID: mdl-38607659

ABSTRACT

Today, the use of artificial pesticides is questionable and the adaptation to global warming is a necessity. The promotion of favorable natural interactions in the rhizosphere offers interesting perspectives for changing the type of agriculture. Strigolactones (SLs), the latest class of phytohormones to be discovered, are also chemical mediators in the rhizosphere. We present in this review the diversity of natural SLs, their analogs, mimics, and probes essential for the biological studies of this class of compounds. Their biosynthesis and access by organic synthesis are highlighted especially concerning noncanonical SLs, the more recently discovered natural SLs. Organic synthesis of analogs, stable isotope-labeled standards, mimics, and probes are also reviewed here. In the last part, the knowledge about the SL perception is described as well as the different inhibitors of SL receptors that have been developed.


Subject(s)
Lactones , Plant Growth Regulators , Plants , Lactones/chemistry , Lactones/metabolism , Plant Growth Regulators/chemistry , Plant Growth Regulators/metabolism , Plant Growth Regulators/chemical synthesis , Plants/metabolism , Plants/chemistry
6.
Org Biomol Chem ; 22(26): 5406-5413, 2024 07 03.
Article in English | MEDLINE | ID: mdl-38874945

ABSTRACT

Besides its native biological function as a plant hormone, cis-(+)-12-oxo-phytodienoic acid (12-OPDA) serves as a metabolite for the cellular formation of (-)-jasmonic acid and has also been shown to have an influence on mammalian cells. In order to make this biologically active, but at the same time very expensive natural product 12-OPDA broadly accessible for further biological and medicinal research, we developed an efficient bioprocess based on the utilization of a tailor-made whole-cell catalyst by following the principles of its biosynthesis in nature. After process optimization, the three-step one-pot synthesis of 12-OPDA starting from readily accessible α-linolenic acid could be conducted at appropriate technically relevant substrate loadings in the range of 5-20 g L-1. The desired 12-OPDA was obtained with an excellent conversion efficiency, and by means of the developed, efficient downstream-processing, this emulsifying as well as stereochemically labile biosynthetic metabolite 12-OPDA was then obtained with very high chemical purity (>99%) and enantio- and diastereomeric excess (>99% ee, 96% de) as well as negligible side-product formation (<1%). With respect to future technical applications, we also demonstrated the scalability of the production of the whole cell-biocatalyst in a high cell-density fermentation process.


Subject(s)
Fatty Acids, Unsaturated , Plant Growth Regulators , Fatty Acids, Unsaturated/chemistry , Fatty Acids, Unsaturated/metabolism , Fatty Acids, Unsaturated/biosynthesis , Fatty Acids, Unsaturated/chemical synthesis , Plant Growth Regulators/chemical synthesis , Plant Growth Regulators/chemistry , Plant Growth Regulators/metabolism , Stereoisomerism , Molecular Structure
7.
Nature ; 563(7733): 652-656, 2018 11.
Article in English | MEDLINE | ID: mdl-30464344

ABSTRACT

The strigolactones, a class of plant hormones, regulate many aspects of plant physiology. In the inhibition of shoot branching, the α/ß hydrolase D14-which metabolizes strigolactone-interacts with the F-box protein D3 to ubiquitinate and degrade the transcription repressor D53. Despite the fact that multiple modes of interaction between D14 and strigolactone have recently been determined, how the hydrolase functions with D3 to mediate hormone-dependent D53 ubiquitination remains unknown. Here we show that D3 has a C-terminal α-helix that can switch between two conformational states. The engaged form of this α-helix facilitates the binding of D3 and D14 with a hydrolysed strigolactone intermediate, whereas the dislodged form can recognize unmodified D14 in an open conformation and inhibits its enzymatic activity. The D3 C-terminal α-helix enables D14 to recruit D53 in a strigolactone-dependent manner, which in turn activates the hydrolase. By revealing the structural plasticity of the SCFD3-D14 ubiquitin ligase, our results suggest a mechanism by which the E3 coordinates strigolactone signalling and metabolism.


Subject(s)
Heterocyclic Compounds, 3-Ring/metabolism , Lactones/metabolism , Oryza/enzymology , Oryza/metabolism , Plant Growth Regulators/metabolism , SKP Cullin F-Box Protein Ligases/chemistry , SKP Cullin F-Box Protein Ligases/metabolism , Signal Transduction , Heterocyclic Compounds, 3-Ring/chemistry , Lactones/chemistry , Models, Molecular , Multienzyme Complexes/antagonists & inhibitors , Multienzyme Complexes/chemistry , Multienzyme Complexes/metabolism , Plant Growth Regulators/chemistry , Plant Proteins/chemistry , Plant Proteins/metabolism , Protein Binding , Protein Structure, Secondary , SKP Cullin F-Box Protein Ligases/antagonists & inhibitors , Structure-Activity Relationship , Ubiquitin , Ubiquitination
8.
J Sep Sci ; 46(15): e2300066, 2023 Aug.
Article in English | MEDLINE | ID: mdl-37349860

ABSTRACT

Plant growth regulators are a class of physiologically active substances that could modify or regulate basic physiological processes in the plant and defense against abiotic and biotic stresses, including natural plant growth regulators and synthetic ones. Different from natural plant growth regulators with low content and high cost of extraction in plants, synthetic ones can be produced in large-scale production and widely used in agriculture for increasing and securing yield and quality of the harvested produce. However, like pesticides, the abuse of plant growth regulators will have negative impacts on human beings. Therefore, it is important to monitor plant growth regulators residues. Due to the low concentration of plant growth regulators and complex matrices of food, it is necessary to isolate and extract plant growth regulators by appropriate adsorbents in sample preparation for obtaining satisfactory results. In the last decade, several advanced materials as adsorbents have shown superiority in sample preparation. This review briefly introduces the recent application and progress of advanced materials as adsorbents in sample preparation for extraction of plant growth regulators from the complex matrix. In the end, the challenge and outlook about the extraction of plant growth regulators of these advanced adsorbents in sample preparation are presented.


Subject(s)
Pesticides , Plant Growth Regulators , Humans , Plant Growth Regulators/chemistry , Plants
9.
Proc Natl Acad Sci U S A ; 117(5): 2693-2703, 2020 02 04.
Article in English | MEDLINE | ID: mdl-31964818

ABSTRACT

Plants use leucine-rich repeat receptor kinases (LRR-RKs) to sense sequence diverse peptide hormones at the cell surface. A 3.0-Å crystal structure of the LRR-RK GSO1/SGN3 regulating Casparian strip formation in the endodermis reveals a large spiral-shaped ectodomain. The domain provides a binding platform for 21 amino acid CIF peptide ligands, which are tyrosine sulfated by the tyrosylprotein sulfotransferase TPST/SGN2. GSO1/SGN3 harbors a binding pocket for sulfotyrosine and makes extended backbone interactions with CIF2. Quantitative biochemical comparisons reveal that GSO1/SGN3-CIF2 represents one of the strongest receptor-ligand pairs known in plants. Multiple missense mutations are required to block CIF2 binding in vitro and GSO1/SGN3 function in vivo. Using structure-guided sequence analysis we uncover previously uncharacterized CIF peptides conserved among higher plants. Quantitative binding assays with known and novel CIFs suggest that the homologous LRR-RKs GSO1/SGN3 and GSO2 have evolved unique peptide binding properties to control different developmental processes. A quantitative biochemical interaction screen, a CIF peptide antagonist and genetic analyses together implicate SERK proteins as essential coreceptor kinases required for GSO1/SGN3 and GSO2 receptor activation. Our work provides a mechanistic framework for the recognition of sequence-divergent peptide hormones in plants.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Peptides/metabolism , Protein Kinases/metabolism , Amino Acid Sequence , Arabidopsis/chemistry , Arabidopsis/enzymology , Arabidopsis/genetics , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/genetics , Kinetics , Ligands , Peptides/chemistry , Plant Growth Regulators/chemistry , Plant Growth Regulators/metabolism , Protein Binding , Protein Kinases/chemistry , Protein Kinases/genetics
10.
PLoS Genet ; 16(12): e1009249, 2020 12.
Article in English | MEDLINE | ID: mdl-33370251

ABSTRACT

Karrikins (KARs), smoke-derived butenolides, are perceived by the α/ß-fold hydrolase KARRIKIN INSENSITIVE2 (KAI2) and thought to mimic endogenous, yet elusive plant hormones tentatively called KAI2-ligands (KLs). The sensitivity to different karrikin types as well as the number of KAI2 paralogs varies among plant species, suggesting diversification and co-evolution of ligand-receptor relationships. We found that the genomes of legumes, comprising a number of important crops with protein-rich, nutritious seed, contain two or more KAI2 copies. We uncover sub-functionalization of the two KAI2 versions in the model legume Lotus japonicus and demonstrate differences in their ability to bind the synthetic ligand GR24ent-5DS in vitro and in genetic assays with Lotus japonicus and the heterologous Arabidopsis thaliana background. These differences can be explained by the exchange of a widely conserved phenylalanine in the binding pocket of KAI2a with a tryptophan in KAI2b, which arose independently in KAI2 proteins of several unrelated angiosperms. Furthermore, two polymorphic residues in the binding pocket are conserved across a number of legumes and may contribute to ligand binding preferences. The diversification of KAI2 binding pockets suggests the occurrence of several different KLs acting in non-fire following plants, or an escape from possible antagonistic exogenous molecules. Unexpectedly, L. japonicus responds to diverse synthetic KAI2-ligands in an organ-specific manner. Hypocotyl growth responds to KAR1, KAR2 and rac-GR24, while root system development responds only to KAR1. This differential responsiveness cannot be explained by receptor-ligand preferences alone, because LjKAI2a is sufficient for karrikin responses in the hypocotyl, while LjKAI2a and LjKAI2b operate redundantly in roots. Instead, it likely reflects differences between plant organs in their ability to transport or metabolise the synthetic KLs. Our findings provide new insights into the evolution and diversity of butenolide ligand-receptor relationships, and open novel research avenues into their ecological significance and the mechanisms controlling developmental responses to divergent KLs.


Subject(s)
Arabidopsis Proteins/genetics , Furans/metabolism , Hydrolases/genetics , Hypocotyl/growth & development , Lotus/metabolism , Plant Growth Regulators/metabolism , Plant Roots/growth & development , Pyrans/metabolism , Arabidopsis/genetics , Arabidopsis Proteins/metabolism , Furans/chemistry , Gene Duplication , Gene Expression Regulation, Plant/genetics , Heterocyclic Compounds, 3-Ring/metabolism , Hydrolases/metabolism , Hypocotyl/metabolism , Lactones/metabolism , Ligands , Lotus/genetics , Microarray Analysis , Phylogeny , Plant Growth Regulators/chemistry , Plant Growth Regulators/genetics , Plant Roots/metabolism , Pyrans/chemistry
11.
Plant J ; 107(1): 54-66, 2021 07.
Article in English | MEDLINE | ID: mdl-33837613

ABSTRACT

Carotenoid-derived regulatory metabolites and hormones are generally known to arise through the oxidative cleavage of a single double bond in the carotenoid backbone, which yields mono-carbonyl products called apocarotenoids. However, the extended conjugated double bond system of these pigments predestines them also to repeated cleavage forming dialdehyde products, diapocarotenoids, which have been less investigated due to their instability and low abundance. Recently, we reported on the short diapocarotenoid anchorene as an endogenous Arabidopsis metabolite and specific signaling molecule that promotes anchor root formation. In this work, we investigated the biological activity of a synthetic isomer of anchorene, iso-anchorene, which can be derived from repeated carotenoid cleavage. We show that iso-anchorene is a growth inhibitor that specifically inhibits primary root growth by reducing cell division rates in the root apical meristem. Using auxin efflux transporter marker lines, we also show that the effect of iso-anchorene on primary root growth involves the modulation of auxin homeostasis. Moreover, by using liquid chromatography-mass spectrometry analysis, we demonstrate that iso-anchorene is a natural Arabidopsis metabolite. Chemical inhibition of carotenoid biosynthesis led to a significant decrease in the iso-anchorene level, indicating that it originates from this metabolic pathway. Taken together, our results reveal a novel carotenoid-derived regulatory metabolite with a specific biological function that affects root growth, manifesting the biological importance of diapocarotenoids.


Subject(s)
Arabidopsis/growth & development , Arabidopsis/metabolism , Plant Growth Regulators/metabolism , Plant Roots/growth & development , Arabidopsis/drug effects , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Carotenoids/metabolism , Gene Expression Regulation, Plant/drug effects , Indoleacetic Acids/metabolism , Meristem/cytology , Meristem/drug effects , Plant Growth Regulators/chemistry , Plant Growth Regulators/pharmacology , Plant Roots/drug effects , Plants, Genetically Modified
12.
Plant J ; 107(1): 67-76, 2021 07.
Article in English | MEDLINE | ID: mdl-33860570

ABSTRACT

Strigolactones play crucial roles in regulating plant architecture and development, as endogenous hormones, and orchestrating symbiotic interactions with fungi and parasitic plants, as components of root exudates. rac-GR24 is currently the most widely used strigolactone analog and serves as a reference compound in investigating the action of strigolactones. In this study, we evaluated a suite of debranones and found that 2-nitrodebranone (2NOD) exhibited higher biological activity than rac-GR24 in various aspects of plant growth and development in Arabidopsis, including hypocotyl elongation inhibition, root hair promotion and senescence acceleration. The enhanced activity of 2NOD in promoting AtD14-SMXL7 and AtD14-MAX2 interactions indicates that the molecular structure of 2NOD is a better match for the ligand perception site pocket of D14. Moreover, 2NOD showed lower activity than rac-GR24 in promoting Orobanche cumana seed germination, suggesting its higher ability to control plant architecture than parasitic interactions. In combination with the improved stability of 2NOD, these results demonstrate that 2NOD is a strigolactone analog that can specifically mimic the activity of strigolactones and that 2NOD exhibits strong potential as a tool for studying the strigolactone signaling pathway in plants.


Subject(s)
Arabidopsis/drug effects , Arabidopsis/growth & development , Heterocyclic Compounds, 3-Ring/pharmacology , Lactones/pharmacology , Plant Growth Regulators/pharmacology , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/metabolism , Carrier Proteins/metabolism , Co-Repressor Proteins/metabolism , Furans/chemistry , Furans/pharmacology , Germination/drug effects , Hypocotyl/drug effects , Molecular Docking Simulation , Orobanche/drug effects , Orobanche/growth & development , Plant Growth Regulators/chemistry , Plant Weeds/drug effects , Plant Weeds/growth & development , Receptors, Cell Surface/chemistry , Receptors, Cell Surface/metabolism , Seeds/drug effects , Water/chemistry
13.
Nature ; 536(7617): 469-73, 2016 08 25.
Article in English | MEDLINE | ID: mdl-27479325

ABSTRACT

Classical hormone receptors reversibly and non-covalently bind active hormone molecules, which are generated by biosynthetic enzymes, to trigger signal transduction. The α/ß hydrolase DWARF14 (D14), which hydrolyses the plant branching hormone strigolactone and interacts with the F-box protein D3/MAX2, is probably involved in strigolactone detection. However, the active form of strigolactone has yet to be identified and it is unclear which protein directly binds the active form of strigolactone, and in which manner, to act as the genuine strigolactone receptor. Here we report the crystal structure of the strigolactone-induced AtD14-D3-ASK1 complex, reveal that Arabidopsis thaliana (At)D14 undergoes an open-to-closed state transition to trigger strigolactone signalling, and demonstrate that strigolactone is hydrolysed into a covalently linked intermediate molecule (CLIM) to initiate a conformational change of AtD14 to facilitate interaction with D3. Notably, analyses of a highly branched Arabidopsis mutant d14-5 show that the AtD14(G158E) mutant maintains enzyme activity to hydrolyse strigolactone, but fails to efficiently interact with D3/MAX2 and loses the ability to act as a receptor that triggers strigolactone signalling in planta. These findings uncover a mechanism underlying the allosteric activation of AtD14 by strigolactone hydrolysis into CLIM, and define AtD14 as a non-canonical hormone receptor with dual functions to generate and sense the active form of strigolactone.


Subject(s)
Arabidopsis Proteins/chemistry , Arabidopsis Proteins/metabolism , Arabidopsis/chemistry , Heterocyclic Compounds, 3-Ring/chemistry , Heterocyclic Compounds, 3-Ring/metabolism , Lactones/chemistry , Lactones/metabolism , Plant Growth Regulators/chemistry , Plant Growth Regulators/metabolism , Receptors, Cell Surface/metabolism , Allosteric Regulation , Amino Acid Sequence , Carrier Proteins/chemistry , Carrier Proteins/metabolism , Crystallography, X-Ray , F-Box Proteins/chemistry , F-Box Proteins/metabolism , Hydrolysis , Models, Molecular , Molecular Sequence Data , Protein Binding , Protein Conformation , Signal Transduction
14.
J Biol Chem ; 295(13): 4181-4193, 2020 03 27.
Article in English | MEDLINE | ID: mdl-32071083

ABSTRACT

Strigolactones (SLs) are terpenoid-derived plant hormones that regulate various developmental processes, particularly shoot branching, root development, and leaf senescence. The SL receptor has an unusual mode of action. Upon binding SL, it hydrolyzes the hormone, and then covalently binds one of the hydrolytic products. These initial events enable the SL receptor DAD2 (in petunia) to interact with the F-box protein PhMAX2A of the Skp-Cullin-F-box (SCF) complex and/or a repressor of SL signaling, PhD53A. However, it remains unclear how binding and hydrolysis structurally alters the SL receptor to enable its engagement with signaling partners. Here, we used mutagenesis to alter DAD2 and affect SL hydrolysis or DAD2's ability to interact with its signaling partners. We identified three DAD2 variants whose hydrolytic activity had been separated from the receptor's interactions with PhMAX2A or PhD53A. Two variants, DAD2N242I and DAD2F135A, having substitutions in the core α/ß hydrolase-fold domain and the hairpin, exhibited hormone-independent interactions with PhMAX2A and PhD53A, respectively. Conversely, the DAD2D166A variant could not interact with PhMAX2A in the presence of SL, but its interaction with PhD53A remained unaffected. Structural analyses of DAD2N242I and DAD2D166A revealed only small differences compared with the structure of the WT receptor. Results of molecular dynamics simulations of the DAD2N242I structure suggested that increased flexibility is a likely cause for its SL-independent interaction with PhMAX2A. Our results suggest that PhMAX2A and PhD53A have distinct binding sites on the SL receptor and that its flexibility is a major determinant of its interactions with these two downstream regulators.


Subject(s)
Heterocyclic Compounds, 3-Ring/chemistry , Lactones/chemistry , Petunia/chemistry , Plant Growth Regulators/genetics , Plant Proteins/chemistry , F-Box Proteins/chemistry , F-Box Proteins/genetics , Gene Expression Regulation, Plant/genetics , Hydrolases/chemistry , Hydrolases/genetics , Petunia/genetics , Plant Growth Regulators/chemistry , Plant Proteins/genetics , Protein Binding/genetics , SKP Cullin F-Box Protein Ligases/chemistry , SKP Cullin F-Box Protein Ligases/genetics , Signal Transduction/genetics
15.
Plant Mol Biol ; 107(4-5): 245-277, 2021 Nov.
Article in English | MEDLINE | ID: mdl-34245404

ABSTRACT

KEY MESSAGE: Most known phytohormones regulate moss development. We present a comprehensive view of the synthesis and signaling pathways for the most investigated of these compounds in mosses, focusing on the model Physcomitrium patens. The last 50 years of research have shown that most of the known phytohormones are synthesized by the model moss Physcomitrium patens (formerly Physcomitrella patens) and regulate its development, in interaction with responses to biotic and abiotic stresses. Biosynthesis and signaling pathways are best described in P. patens for the three classical hormones auxins, cytokinins and abscisic acid. Furthermore, their roles in almost all steps of development, from early filament growth to gametophore development and sexual reproduction, have been the focus of much research effort over the years. Evidence of hormonal roles exist for ethylene and for CLE signaling peptides, as well as for salicylic acid, although their possible effects on development remain unclear. Production of brassinosteroids by P. patens is still debated, and modes of action for these compounds are even less known. Gibberellin biosynthesis and signaling may have been lost in P. patens, while gibberellin precursors such as ent-kaurene derivatives could be used as signals in a yet to discover pathway. As for jasmonic acid, it is not used per se as a hormone in P. patens, but its precursor OPDA appears to play a corresponding role in defense against abiotic stress. We have tried to gather a comprehensive view of the biosynthesis and signaling pathways for all these compounds in mosses, without forgetting strigolactones, the last class of plant hormones to be reported. Study of the strigolactone response in P. patens points to a novel signaling compound, the KAI2-ligand, which was likely employed as a hormone prior to land plant emergence.


Subject(s)
Bryophyta/metabolism , Plant Growth Regulators/biosynthesis , Plant Proteins/metabolism , Signal Transduction/physiology , Bryophyta/drug effects , Bryophyta/genetics , Cyclopentanes/chemistry , Cyclopentanes/metabolism , Cyclopentanes/pharmacology , Cytokinins/chemistry , Cytokinins/metabolism , Cytokinins/pharmacology , Gene Expression Regulation, Plant/drug effects , Gibberellins/chemistry , Gibberellins/metabolism , Gibberellins/pharmacology , Indoleacetic Acids/chemistry , Indoleacetic Acids/metabolism , Indoleacetic Acids/pharmacology , Molecular Structure , Oxylipins/chemistry , Oxylipins/metabolism , Oxylipins/pharmacology , Plant Growth Regulators/chemistry , Plant Growth Regulators/pharmacology , Plant Proteins/genetics , Signal Transduction/drug effects , Signal Transduction/genetics
16.
Plant Physiol ; 182(4): 1537-1544, 2020 04.
Article in English | MEDLINE | ID: mdl-31919187

ABSTRACT

Hormonal cues regulate many aspects of plant growth and development, facilitating the plant's ability to systemically respond to environmental changes. Elucidating the molecular mechanisms governing these signaling pathways is crucial to understanding how plants function. Structural and functional biology methods have been essential in decoding plant genetic findings and revealing precise molecular actions at the protein level. Past studies of plant hormone signaling have uncovered mechanisms that involve highly coordinated protein turnover to elicit immediate cellular responses. Many phytohormone signaling pathways rely on the ubiquitin (Ub) proteasome system, specifically E3 Ub ligases, for perception and initiation of signaling transduction. In this review, we highlight structural aspects of plant hormone-sensing mechanisms by Ub ligases and discuss our current understanding of the emerging field of strigolactone signaling.


Subject(s)
Plant Growth Regulators/chemistry , Plant Growth Regulators/metabolism , Signal Transduction , Ubiquitin-Protein Ligases/metabolism , Models, Molecular , Proteasome Endopeptidase Complex/metabolism , Ubiquitin/metabolism
17.
Amino Acids ; 53(9): 1373-1389, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34386848

ABSTRACT

Glycogen synthase kinase 3ß (GSK3ß) is considered an important element of glycogen metabolism; however, it has many other regulatory roles. Changes in the GSK3ß signaling mechanism have been associated with various disorders, such as Alzheimer's disease (AD), type II diabetes, and cancer. Although the effects of GSK3ß inhibitors on reducing the pathological effects of AD have been described, an effective inhibitor has not yet been developed. Epibrassinolide (EBR), a brassinosteroid (BR), is structurally similar to mammalian steroid hormones. Our studies have shown that EBR has an inhibitory effect on GSK3ß in different cell lines. Roscovitine (ROSC), a cyclin-dependent kinase (CDK) inhibitor, has also been identified as a potential GSK3 inhibitor. Within the scope of this study, we propose that EBR and/or ROSC might have mechanistic action in AD models. To test this hypothesis, we used in vitro models and Caenorhabditis elegans (C. elegans) AD strains. Finally, EBR treatment successfully protected cells from apoptosis and increased the inhibitory phosphorylation of GSK3ß. In addition, EBR and/or ROSC treatment had a positive effect on the survival rates of C. elegans strains. More interestingly, the paralysis phenotype of the C. elegans AD model due to Aß42 toxicity was prevented by EBR and/or ROSC. Our findings suggest that EBR and ROSC administration have neuroprotective effects on both in vitro and C. elegans models via inhibitory GSK3ß phosphorylation at Ser9.


Subject(s)
Brassinosteroids/pharmacology , Caenorhabditis elegans/growth & development , Glycogen Synthase Kinase 3 beta/antagonists & inhibitors , Longevity , Motor Disorders/drug therapy , Roscovitine/pharmacology , Steroids, Heterocyclic/pharmacology , tau Proteins/metabolism , Animals , Brassinosteroids/chemistry , Caenorhabditis elegans/drug effects , Caenorhabditis elegans/metabolism , Caenorhabditis elegans Proteins/genetics , Caenorhabditis elegans Proteins/metabolism , Drug Therapy, Combination , Glycogen Synthase Kinase 3 beta/genetics , Glycogen Synthase Kinase 3 beta/metabolism , Neuroprotective Agents/pharmacology , Phosphorylation , Plant Growth Regulators/chemistry , Plant Growth Regulators/pharmacology , Protein Kinase Inhibitors/pharmacology , Steroids, Heterocyclic/chemistry , tau Proteins/genetics
18.
Org Biomol Chem ; 19(13): 2978-2985, 2021 04 07.
Article in English | MEDLINE | ID: mdl-33729254

ABSTRACT

We report here the synthesis and biological testing of 3'-(phenyl alkynyl) abscisic ABA analogs, a new class of potent ABA antagonists. These ABA analogs incorporate a rigid framework of eight carbon atoms attached at the 3'-carbon atom of ABA that prevents folding of the ABA analog-bound receptor required for ABA signalling. The two-step synthesis is based upon the optimized conversion of natural (S)-ABA to 3'-iodo ABA which can be coupled to phenyl acetylenes using Sonogashira conditions, or to styryl compounds through Suzuki chemistry. The parent 3'-(phenyl alkynyl) ABA analog 7 was obtained in 29% yield, 74% yield based on recovered starting material. In a lentil seed germination assay, compound 7 was found to have more potent activity than other known 3'-substituted ABA antagonists to date. In a structure activity study parasubstituted phenyl alkynyl analogs had comparable activity to the analog 7 while the 3'-styryl ABA 18 was only slightly less active. Analog 7 overcame ABA inhibition of germination and seedling growth in a wide range of mono and dicot plant species, including canola, lentil, soybean, rice, wheat, barley, cannabis and canary seed. 3'-(Phenyl alkynyl) ABA analogs have numerous potential practical agricultural applications including promoting ripening of crops, dormancy breaking of seeds and woody perennials, as well as promoting seed germination, and growth under stress conditions as demonstrated in this report.


Subject(s)
Abscisic Acid/pharmacology , Alkynes/pharmacology , Plant Growth Regulators/pharmacology , Plants/drug effects , Abscisic Acid/chemical synthesis , Abscisic Acid/chemistry , Alkynes/chemical synthesis , Alkynes/chemistry , Germination/drug effects , Molecular Structure , Plant Growth Regulators/chemical synthesis , Plant Growth Regulators/chemistry , Plants/metabolism , Seeds/drug effects , Signal Transduction/drug effects
19.
Nature ; 525(7568): 265-8, 2015 Sep 10.
Article in English | MEDLINE | ID: mdl-26308901

ABSTRACT

Phytosulfokine (PSK) is a disulfated pentapeptide that has a ubiquitous role in plant growth and development. PSK is perceived by its receptor PSKR, a leucine-rich repeat receptor kinase (LRR-RK). The mechanisms underlying the recognition of PSK, the activation of PSKR and the identity of the components downstream of the initial binding remain elusive. Here we report the crystal structures of the extracellular LRR domain of PSKR in free, PSK- and co-receptor-bound forms. The structures reveal that PSK interacts mainly with a ß-strand from the island domain of PSKR, forming an anti-ß-sheet. The two sulfate moieties of PSK interact directly with PSKR, sensitizing PSKR recognition of PSK. Supported by biochemical, structural and genetic evidence, PSK binding enhances PSKR heterodimerization with the somatic embryogenesis receptor-like kinases (SERKs). However, PSK is not directly involved in PSKR-SERK interaction but stabilizes PSKR island domain for recruitment of a SERK. Our data reveal the structural basis for PSKR recognition of PSK and allosteric activation of PSKR by PSK, opening up new avenues for the design of PSKR-specific small molecules.


Subject(s)
Arabidopsis Proteins/agonists , Arabidopsis Proteins/chemistry , Arabidopsis/chemistry , Plant Growth Regulators/chemistry , Plant Growth Regulators/pharmacology , Receptors, Cell Surface/agonists , Receptors, Cell Surface/chemistry , Allosteric Regulation/drug effects , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Crystallography, X-Ray , Models, Molecular , Mutation/genetics , Peptide Hormones/chemistry , Peptide Hormones/metabolism , Peptide Hormones/pharmacology , Plant Growth Regulators/metabolism , Plant Proteins/chemistry , Plant Proteins/metabolism , Plant Proteins/pharmacology , Protein Binding , Protein Kinases/chemistry , Protein Kinases/metabolism , Protein Multimerization/drug effects , Protein Serine-Threonine Kinases/chemistry , Protein Serine-Threonine Kinases/metabolism , Protein Stability , Protein Structure, Secondary/drug effects , Protein Structure, Tertiary/drug effects , Receptors, Cell Surface/genetics , Receptors, Cell Surface/metabolism , Substrate Specificity
20.
Ecotoxicol Environ Saf ; 220: 112361, 2021 Sep 01.
Article in English | MEDLINE | ID: mdl-34052757

ABSTRACT

Exposure to ethephon (ETH), a plant growth regulator commonly used for several purposes, can potentially decrease sperm numbers and viability. Occasional findings regarding ETH effects on female reproduction during early pregnancy have also been reported. During early pregnancy, endometrial decidualization is a critical event for embryo implantation and pregnancy maintenance. Thus, we aimed to explore the effect and mechanism of ETH on endometrial decidualization both in vivo and in vitro. Mice were gavaged with 0 and 285 mg/kg b.w. ETH from gestational days (GD)1 until sacrifice, whereas pseudopregnant mice from pseudopregnant day 1 (PPD-1) until PPD-8. Primary mouse endometrial stromal cells (mESCs) received 640 ug/ml ETH and added E2 and P4 to induce decidualization. Results indicated female albino CD1 mice exposed to high dose of ETH (285 mg/kg b.w.) by oral gavage, the number of embryo implantation sites on GD6 and GD8 were significantly decreased, the levels of serum E2 and P4 on GD8 were significantly decreased. Compared with the control group, the decidualization response artificially induced by corn oil in pseudopregnant mice and by E2 and P4 in primary mouse endometrial stromal cells (mESCs) was weakened in the high dose of ETH treated group. The high dose, 285 mg/kg b.w ETH treated group altered the expression of endometrial decidual markers on GD6 and GD8. The triglyceride and fatty acid metabolism-related genes were significantly increased after female albino CD1 mice exposed to high does, 285 mg/kg b.w ETH on GD6 and GD8. GPR120 was substantially reduced after ETH treatment. When overexpression of GPR120, the compromised decidualization induced by ETH treatment was rescued. Furthermore, molecular docking presented Thr234 and His251 of GPR120 as preferred binding sites for ETH. Mutation of these two sites rescued the compromised decidualization induced by ETH. In conclusion, we demonstrated that ETH exposure could impair decidualization during early pregnancy. GPR120 expression and binding between GPR120 and ETH are crucial for impaired decidualization mediated via ETH.


Subject(s)
Endometrium/drug effects , Organophosphorus Compounds/toxicity , Plant Growth Regulators/toxicity , Receptors, G-Protein-Coupled/metabolism , Animals , Decidua/drug effects , Decidua/metabolism , Decidua/pathology , Embryo Implantation/drug effects , Endometrium/metabolism , Endometrium/pathology , Female , Mice , Molecular Docking Simulation , Organophosphorus Compounds/chemistry , Plant Growth Regulators/chemistry , Pregnancy , Receptors, G-Protein-Coupled/chemistry , Stromal Cells/drug effects , Stromal Cells/metabolism , Stromal Cells/pathology
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