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1.
Virol J ; 16(1): 36, 2019 03 20.
Article in English | MEDLINE | ID: mdl-30894176

ABSTRACT

BACKGROUND: Cross protection is a promising alternative to control plant viral diseases. One critical factor limiting the application of cross protection is the availability of attenuated mutants or mild strains. Potato virus X (PVX) infects many crops and induces huge economic losses to agricultural production. However, researches on the variability and mechanism of PVX virulence are scarce. METHODS: The mutants were obtained by introducing mutations into the RNA dependent RNA polymerase (RdRp) gene of PVX via site-directed mutagenesis. Attenuated mutants were screen according to their symptoms in Nicotiana benthamiana plants. The protection efficacy against severe infection were evaluated with interval of 5, 10 and 15 days. RESULTS: Among the 40 mutants obtained, four mutants carrying substitutions of either Glu46, Asn863, Asn968 or Glu1001 to Ala in PVX RdRp showed drastically attenuated symptom, accompanying with reduced accumulation levels of coat protein, plus- and minus-sense RNAs. When the interval between protective and challenging inoculations was 15 days, mutant E1001A (with substitution of Glu1001 to Ala in RdRp) provided complete protection against severe infection in both Nicotiana benthamiana and tomato, while E46A (Glu46 mutated to Ala) provided incomplete protection. To reduce the risk of reverse mutation, we constructed mutant dM which carries double mutations of both Glu46 and Glu1001 to Ala in RdRp. The mutant dM could provide effective protection against severe PVX infection. CONCLUSION: Mutations of Glu46, Asn863, Asn968 or Glu1001 to Ala in PVX RdRp significantly reduced the viral symptoms. Mutants E1001A and E46A could provide effective protection against wild type PVX in both Nicotiana benthamiana and tomato. These results provide theoretical and practical bases for the control of PVX via cross protection.


Subject(s)
Cross Protection , Mutation , Plant Diseases/virology , Potexvirus/genetics , China , Genome, Viral , Solanum lycopersicum/virology , Mutagenesis, Site-Directed , Plant Leaves/virology , Potexvirus/enzymology , Potexvirus/physiology , RNA, Viral/genetics , RNA-Dependent RNA Polymerase/genetics , Reverse Genetics , Nicotiana/virology , Viral Proteins/genetics , Virulence/genetics
2.
Phytopathology ; 106(4): 395-406, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26667188

ABSTRACT

Pepino mosaic virus (PepMV) is an emerging pathogen that represents a serious threat to tomato production worldwide. PepMV-induced diseases manifest with a wide range of symptoms, including systemic necrosis. Our results showed that PepMV accumulation depends on the virus isolate, tomato cultivar, and environmental conditions, and associates with the development of necrosis. Substitution of lysine for glutamic acid at position 67 in the triple gene block 3 (TGB3) protein, previously described as a necrosis determinant, led to increased virus accumulation and was necessary but not sufficient to induce systemic necrosis. Systemic necrosis both in tomato and Nicotiana benthamiana shared hypersensitive response (HR) features, allowing the assessment of the role of different genomic regions on necrosis induction. Overexpression of both TGB3 and the polymerase domain (POL) of the RNA-dependent RNA polymerase (RdRp) resulted in necrosis, although only local expression of POL triggered HR-like symptoms. Our results also indicated that the necrosis-eliciting activity of POL resides in its highly conserved "palm" domain, and that necrosis was jasmonic acid-dependent but not salicylic acid-dependent. Altogether, our data suggest that the RdRp-POL domain plays an important role in PepMV necrosis induction, with necrosis development depending on the virus accumulation level, which can be modulated by the nature of TGB3, host genotype and environmental conditions.


Subject(s)
Plant Diseases/virology , Potexvirus/enzymology , RNA-Dependent RNA Polymerase/genetics , Solanum lycopersicum/virology , Amino Acid Sequence , Cyclopentanes/metabolism , Environment , Genotype , Host-Pathogen Interactions , Solanum lycopersicum/genetics , Solanum lycopersicum/ultrastructure , Molecular Sequence Data , Oxylipins/metabolism , Plant Growth Regulators/metabolism , Plant Leaves/genetics , Plant Leaves/ultrastructure , Plant Leaves/virology , Potexvirus/genetics , Potexvirus/pathogenicity , Potexvirus/ultrastructure , Protein Structure, Tertiary , Salicylic Acid/metabolism , Sequence Alignment , Nicotiana/genetics , Nicotiana/ultrastructure , Nicotiana/virology
3.
Mol Plant Microbe Interact ; 26(9): 1106-12, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23906090

ABSTRACT

Lectin-mediated resistance (LMR) has been suggested to comprise an uncharacterized branch of antiviral plant innate immunity. To unveil the feature of resistance conferred by jacalin-type lectin required for potexvirus resistance 1 (JAX1), a recently isolated LMR gene against potexviruses, we analyzed the resistance-breaking variants to find the viral component involved in resistance. We employed grafting-mediated inoculation, a high-pressure virus inoculation method, to obtain Potato virus X (PVX) variants that can overcome JAX1-mediated resistance. Whole-genome sequencing of the variants suggested that a single amino acid in the methyl transferase domain of the replicase encoded by PVX is responsible for this resistance-breaking property. Reintroduction of the amino-acid substitution to avirulent wild-type PVX was sufficient to overcome the JAX1-mediated resistance. These results suggest that viral replicase is involved in JAX1-mediated resistance. The residue that determines the resistance-breaking properties was highly conserved among potexviruses, suggesting a general role of the residue in potexvirus-JAX1 interactions.


Subject(s)
Nicotiana/virology , Plant Diseases/virology , Plant Immunity , Potexvirus/enzymology , Potexvirus/pathogenicity , RNA-Dependent RNA Polymerase/genetics , Amino Acid Sequence , Amino Acid Substitution , Molecular Sequence Data , Plant Diseases/immunology , Plant Lectins/metabolism , Plants, Genetically Modified , Potexvirus/genetics , RNA, Viral/genetics , RNA-Dependent RNA Polymerase/metabolism , Sequence Alignment , Sequence Analysis, DNA , Nicotiana/immunology , Viral Proteins/genetics , Viral Proteins/metabolism
4.
Mol Plant Microbe Interact ; 24(4): 408-20, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21190438

ABSTRACT

Systemic necrosis is the most destructive symptom induced by plant pathogens. We previously identified amino acid 1154, in the polymerase domain (POL) of RNA-dependent RNA polymerase (RdRp) of Plantago asiatica mosaic virus (PlAMV), which affects PlAMV-induced systemic necrosis in Nicotiana benthamiana. By point-mutation analysis, we show that amino acid 1,154 alone is not sufficient for induction of necrotic symptoms. However, PlAMV replicons that can express only RdRp, derived from a necrosis-inducing PlAMV isolate, retain their ability to induce necrosis, and transient expression of PlAMV-encoded proteins indicated that the necrosis-eliciting activity resides in RdRp. Moreover, inducible-overexpression analysis demonstrated that the necrosis was induced in an RdRp dose-dependent manner. In addition, during PlAMV infection, necrotic symptoms are associated with high levels of RdRp accumulation. Surprisingly, necrosis-eliciting activity resides in the helicase domain (HEL), not in the amino acid 1,154-containing POL, of RdRp, and this activity was observed even in HELs of PlAMV isolates of which infection does not cause necrosis. Moreover, HEL-induced necrosis had characteristics similar to those induced by PlAMV infection. Overall, our data suggest that necrotic symptoms induced by PlAMV infection depend on the accumulation of a non-isolate specific elicitor HEL (even from nonnecrosis isolates), whose expression is indirectly regulated by amino acid 1,154 that controls replication.


Subject(s)
Gene Expression Regulation, Viral , Nicotiana/virology , Potexvirus/genetics , Potexvirus/physiology , RNA-Dependent RNA Polymerase/genetics , Virus Replication/physiology , Frameshift Mutation , Gene Expression Regulation, Enzymologic , Necrosis , Plant Diseases/virology , Point Mutation , Potexvirus/enzymology , Potexvirus/pathogenicity , Protein Structure, Tertiary , RNA-Dependent RNA Polymerase/metabolism , RNA-Dependent RNA Polymerase/physiology , Viral Proteins/genetics , Viral Proteins/metabolism , Viral Proteins/physiology , Virus Replication/genetics
5.
Front Immunol ; 12: 739837, 2021.
Article in English | MEDLINE | ID: mdl-34721406

ABSTRACT

We have developed a new binary epitope-presenting CVP platform based on bamboo mosaic virus (BaMV) by using the sortase A (SrtA)-mediated ligation technology. The reconstructed BaMV genome harbors two modifications: 1) a coat protein (CP) with N-terminal extension of the tobacco etch virus (TEV) protease recognition site plus 4 extra glycine (G) residues as the SrtA acceptor; and 2) a TEV protease coding region replacing that of the triple-gene-block proteins. Inoculation of such construct, pKB5G, on Nicotiana benthamiana resulted in the efficient production of filamentous CVPs ready for SrtA-mediated ligation with desired proteins. The second part of the binary platform includes an expression vector for the bacterial production of donor proteins. We demonstrated the applicability of the platform by using the recombinant envelope protein domain III (rEDIII) of Japanese encephalitis virus (JEV) as the antigen. Up to 40% of the BaMV CP subunits in each CVP were loaded with rEDIII proteins in 1 min. The rEDIII-presenting BaMV CVPs (BJLPET5G) could be purified using affinity chromatography. Immunization assays confirmed that BJLPET5G could induce the production of neutralizing antibodies against JEV infections. The binary platform could be adapted as a useful alternative for the development and mass production of vaccine candidates.


Subject(s)
Aminoacyltransferases/metabolism , Antigens, Viral/administration & dosage , Bacterial Proteins/metabolism , Cysteine Endopeptidases/metabolism , Encephalitis Virus, Japanese/immunology , Encephalitis, Japanese/prevention & control , Endopeptidases/metabolism , Japanese Encephalitis Vaccines/administration & dosage , Potexvirus/enzymology , Virion/enzymology , Aminoacyltransferases/genetics , Animals , Antibodies, Neutralizing/blood , Antibodies, Neutralizing/immunology , Antigens, Viral/genetics , Antigens, Viral/immunology , Bacterial Proteins/genetics , Cell Line , Cysteine Endopeptidases/genetics , Disease Models, Animal , Encephalitis Virus, Japanese/genetics , Encephalitis, Japanese/blood , Encephalitis, Japanese/immunology , Encephalitis, Japanese/virology , Endopeptidases/genetics , Escherichia coli/genetics , Escherichia coli/immunology , Escherichia coli/metabolism , Female , Genetic Vectors , Immunogenicity, Vaccine , Japanese Encephalitis Vaccines/genetics , Japanese Encephalitis Vaccines/immunology , Mice, Inbred BALB C , Plants, Genetically Modified/genetics , Plants, Genetically Modified/immunology , Plants, Genetically Modified/metabolism , Potexvirus/genetics , Potexvirus/immunology , Nicotiana/genetics , Nicotiana/immunology , Nicotiana/metabolism , Virion/genetics , Virion/immunology
6.
J Virol ; 83(15): 7761-9, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19439477

ABSTRACT

Recombination in RNA viruses, one of the main factors contributing to their genetic variability and evolution, is a widespread phenomenon. In this study, an in vivo assay to characterize RNA recombination in potato virus X (PVX), under high selection pressure, was established. Agrobacterium tumefaciens was used to express in Nicotiana benthamiana leaf tissue both a PVX isolate labeled with green fluorescent protein (GFP) containing a coat protein deletion mutation (DeltaCP) and a transcript encoding a functional coat protein +3'-ntr. Coexpression of the constructs led to virus movement and systemic infection; reconstituted recombinants were observed in 92% of inoculated plants. Similar results were obtained using particle bombardment, demonstrating that recombination mediated by A. tumefaciens was not responsible for the occurrence of PXC recombinants. The speed of recombination could be estimated by agroinfection of two PVX mutants lacking the 3' and 5' halves of the genome, respectively, with an overlap in the triple gene block 1 gene, allowing GFP expression only in the case of recombination. Ten different pentapeptide insertion scanning replicase mutants with replication abilities comparable to wild-type virus were applied in the different recombination assays. Two neighboring mutants affecting the linker between the methyltransferase and helicase domains were shown to be strongly debilitated in their ability to recombine. The possible functional separation of replication and recombination in the replicase molecule supports the model that RNA recombination represents a distinct function of this protein, although the underlying mechanism still needs to be investigated.


Subject(s)
Nicotiana/virology , Potexvirus/enzymology , Potexvirus/genetics , RNA-Dependent RNA Polymerase/metabolism , Recombination, Genetic , Viral Proteins/metabolism , Potexvirus/chemistry , Protein Structure, Tertiary , RNA-Dependent RNA Polymerase/chemistry , RNA-Dependent RNA Polymerase/genetics , Viral Proteins/chemistry , Viral Proteins/genetics
7.
J Virol ; 83(11): 5796-805, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19297487

ABSTRACT

Bamboo mosaic virus (BaMV) is a 6.4-kb positive-sense RNA virus belonging to the genus Potexvirus of the family Flexiviridae. The 155-kDa viral replicase, the product of ORF1, comprises an N-terminal S-adenosyl-l-methionine (AdoMet)-dependent guanylyltransferase, a nucleoside triphosphatase/RNA 5'-triphosphatase, and a C-terminal RNA-dependent RNA polymerase (RdRp). To search for cellular factors potentially involved in the regulation of replication and/or transcription of BaMV, the viral RdRp domain was targeted as bait to screen against a leaf cDNA library of Nicotiana benthamiana using a yeast two-hybrid system. A putative methyltransferase (PNbMTS1) of 617 amino acid residues without an established physiological function was identified. Cotransfection of N. benthamiana protoplasts with a BaMV infectious clone and the PNbMTS1-expressing plasmid showed a PNbMTS1 dosage-dependent inhibitory effect on the accumulation of BaMV coat protein. Deletion of the N-terminal 36 amino acids, deletion of a predicted signal peptide or transmembrane segment, or mutations in the putative AdoMet-binding motifs of PNbMTS1 abolished the inhibitory effect. In contrast, suppression of PNbMTS1 by virus-induced gene silencing in N. benthamiana increased accumulation of the viral coat protein as well as the viral genomic RNA. Collectively, PNbMTS1 may function as an innate defense protein against the accumulation of BaMV through an uncharacterized mechanism.


Subject(s)
Methyltransferases/metabolism , Nicotiana/virology , Potexvirus/enzymology , Amino Acid Sequence , Methyltransferases/chemistry , Methyltransferases/genetics , Molecular Sequence Data , Potexvirus/genetics , Protein Binding , Protoplasts/metabolism , Substrate Specificity , Two-Hybrid System Techniques
8.
Mol Plant Pathol ; 20(5): 673-684, 2019 05.
Article in English | MEDLINE | ID: mdl-30924604

ABSTRACT

One up-regulated host gene identified previously was found involved in the infection process of Bamboo mosaic virus (BaMV), a single-stranded positive-sense RNA virus. The full length cDNA of this gene was cloned by 5' and 3'-rapid amplification of cDNA ends and found to encode a polypeptide containing a conserved really interesting new gene (RING) domain and a transmembrane domain. The gene might function as an ubiquitin E3 ligase. We designated this protein in Nicotiana benthamiana as ubiquitin E3 ligase containing RING domain 1 (NbUbE3R1). Further characterization by using Tobacco rattle virus-based virus-induced gene silencing (loss-of-function) revealed that increased BaMV accumulation was in both knockdown plants and protoplasts. The gene might have a defensive role in the replication step of BaMV infection. To further inspect the functional role of NbUbE3R1 in BaMV accumulation, NbUbE3R1 was expressed in N. benthamiana plants. The wild-type NbUbE3R1-orange fluorescent protein (NbUbE3R1-OFP), NbUbE3R1/Ć¢Ā–Ā³TM-OFP (removal of the transmembrane domain) and NbUbE3R1/mRING-OFP (mutation at the RING domain, the E2 interaction site) were transiently expressed in plants. NbUbE3R1 and its derivatives all functioned in restricting the accumulation of BaMV. The common feature of these constructs was the intact substrate-interacting domain. Yeast two-hybrid and co-immunoprecipitation experiments used to determine the possible viral-encoded substrate of NbUbE3R1 revealed the replicase of BaMV as the possible substrate. In conclusion, we identified an up-regulated gene, NbUbE3R1 that plays a role in BaMV replication.


Subject(s)
Nicotiana/enzymology , Nicotiana/virology , Potexvirus/physiology , RNA-Dependent RNA Polymerase/metabolism , Virus Replication/physiology , Capsid Proteins/metabolism , DNA, Complementary/genetics , Gene Expression Regulation, Plant/drug effects , Genes, Plant , Leupeptins/pharmacology , Plant Diseases/virology , Plant Proteins/genetics , Plant Proteins/metabolism , Potexvirus/drug effects , Potexvirus/enzymology , Protein Binding/drug effects , Protein Stability/drug effects , Saccharomyces cerevisiae/metabolism , Subcellular Fractions/metabolism , Nicotiana/drug effects , Nicotiana/genetics , Ubiquitin-Protein Ligases/genetics , Ubiquitin-Protein Ligases/metabolism , Up-Regulation/drug effects , Up-Regulation/genetics , Virus Replication/drug effects
9.
FEBS Lett ; 579(22): 4955-60, 2005 Sep 12.
Article in English | MEDLINE | ID: mdl-16115626

ABSTRACT

Coat proteins (CPs) of plant viruses are involved in different stages of the viral life cycle such as virion assembly, replication, movement, vector transmission, and regulation of host defense responses. Here, we report that the CPs of two filamentous RNA viruses, potato virus X (PVX, Potexvirus) and potato virus A (PVA, Potyvirus) exhibit an enzyme activity. The CP isolated from PVX virions possesses ATP-binding and ATPase activities. Recombinant PVX and PVA CPs produced in Escherichia coli show Mg2+-dependent ATPase and UTPase activities inhibited by antibodies against virus particles. Deletion of the C-terminal regions of these proteins diminishes their ATPase activity.


Subject(s)
Capsid Proteins/metabolism , Nucleoside-Triphosphatase/metabolism , Potexvirus/enzymology , Potyvirus/enzymology , Adenosine Triphosphate/metabolism , Capsid Proteins/genetics , Magnesium/metabolism , Nucleoside-Triphosphatase/genetics , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Virion/metabolism
10.
Virus Res ; 110(1-2): 177-82, 2005 Jun.
Article in English | MEDLINE | ID: mdl-15845269

ABSTRACT

A Potato virus X (PVX) strain, PVX-OS, causes a necrotic mosaic in Nicotiana benthamiana and ring spot mosaic in N. tabacum cv. SamsunNN. By contrast, strain PVX-BS causes a mild mosaic in N. benthamiana and systemic asymptomatic infection in N. tabacum cv. SamsunNN. To investigate the viral determinant of this difference, we produced various infectious cDNA clones chimeric between these PVX genomes and clones with point mutations introduced by site-directed mutagenesis. Inoculation tests with these clones mapped the symptom determinant in Nicotiana plants to the 1422 amino acid residue in the region of the C-terminus of RNA-dependent RNA polymerase (RdRp). Western blot analysis and local lesion assay indicated that virus accumulation in the infected leaves was similar for these PVX strains, suggesting that the symptom difference was not due to virus accumulation.


Subject(s)
Nicotiana/virology , Plant Diseases/virology , Potexvirus/enzymology , RNA-Directed DNA Polymerase/genetics , RNA-Directed DNA Polymerase/physiology , Amino Acid Substitution , Mutagenesis, Site-Directed , Mutation, Missense , Plant Leaves/virology , Potexvirus/genetics , Potexvirus/pathogenicity , Recombination, Genetic , Viral Proteins/analysis , Viral Proteins/isolation & purification
11.
Virus Res ; 58(1-2): 127-36, 1998 Nov.
Article in English | MEDLINE | ID: mdl-9879769

ABSTRACT

A mutant population of bamboo mosaic potexvirus (BaMV) was isolated after serial passage using Chenopodium quinoa plants. While the wild type inoculum induced indistinct chlorotic lesions, the mutant produced obvious lesions on C. quinoa although RNA accumulation of the mutant in Nicotiana benthamiana protoplasts was significantly reduced compared to wild type. Mutations were identified in the helicase-like domain. One RT-PCR-generated cDNA clone (designated pL1-33) representing the helicase-like region showed four nucleotide mutations encoding three amino acid changes that were shown to result in dramatically decreased viral accumulation. Independent analyses of the effects of these substitutions showed that nucleotide changes at position 1722 resulting in a leucine to proline switch and position 2129 resulting in a histidine to tyrosine switch had the greatest effect on viral accumulation. Combination of these two mutations resulted in a undetectable viral accumulation. We have identified that amino acids within the helicase domain but outside the universally conserved helicase-like motifs that play an important role in viral amplification.


Subject(s)
Evolution, Molecular , Mosaic Viruses/genetics , Mutation , Potexvirus/genetics , RNA Helicases/metabolism , RNA, Viral/metabolism , Amino Acid Sequence , Amino Acids/metabolism , Molecular Sequence Data , Mosaic Viruses/enzymology , Open Reading Frames , Poaceae/virology , Potexvirus/enzymology , RNA, Viral/physiology , Sequence Homology, Amino Acid , Virus Replication
12.
Virus Res ; 80(1-2): 41-52, 2001 Nov 28.
Article in English | MEDLINE | ID: mdl-11597747

ABSTRACT

RNA-dependent RNA polymerases (RdRp) isolated from bamboo mosaic potexvirus (BaMV) and potato virus X infected Nicotiana benthamiana plants and solubilized with the detergent NP-40, generated a full-length genomic and two subgenomic double-stranded RNAs of respective viruses in an in vitro RdRp assay containing endogenous RNA templates. Template-dependent and species-specific RdRp activity could be detected after the removal of endogenous RNA templates. The 3' untranslated regions (UTR) containing a stretch of 40 adenylate residues were shown to be an efficient exogenous RNA template for in vitro RdRp reactions. Solution hybridization and nuclease digestion studies revealed that the products transcribed in vitro were minus-sense. Besides using the 3' UTR for minus-sense RNA synthesis, the BaMV RdRp can also recognize 3' terminal 77 nucleotides of the minus-strand for plus-sense RNA synthesis. Promoter studies with BaMV RdRp showed that domain D containing the potexviral hexamer motif of the 3' UTR would be the major contributor of minus-sense RNA synthesis in vitro. On the other hand, the pseudoknot domain containing the poly(A) sequences would be sufficient for minus-sense RNA synthesis.


Subject(s)
Mosaic Viruses/enzymology , Nicotiana/virology , Potexvirus/enzymology , RNA-Dependent RNA Polymerase/isolation & purification , 3' Untranslated Regions/chemistry , Mosaic Viruses/genetics , Nucleic Acid Conformation , Potexvirus/genetics , RNA, Viral/biosynthesis , RNA, Viral/chemistry , RNA-Dependent RNA Polymerase/genetics , Species Specificity , Templates, Genetic
13.
Virus Res ; 167(2): 267-72, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22617023

ABSTRACT

Pepino mosaic virus (PepMV)-infected tomato plants were used to develop an in vitro template-dependent system for the study of viral RNA synthesis. Differential sedimentation and sucrose-gradient purification of PepMV-infected tomato extracts resulted in fractions containing a transcriptionally active membrane-bound RNA-dependent RNA polymerase (RdRp). In the presence of Mg(2+) ions, (32)P-labelled UTP and unlabelled ATP, CTP, GTP, the PepMV RdRp catalysed the conversion of endogenous RNA templates into single- and double-stranded (ds) genomic RNAs and three 3'-co-terminal subgenomic dsRNAs. Hybridisation experiments showed that the genomic ssRNA was labelled only in the plus strand, the genomic dsRNA mainly in the plus strand and the three subgenomic dsRNAs equally in both strands. Following removal of the endogenous templates from the membrane-bound complex, the purified template-dependent RdRp could specifically catalyse transcription of PepMV virion RNA, in vitro-synthesized full-length plus-strand RNA and the 3'-termini of both the plus- and minus-strand RNAs. Rabbit polyclonal antibodies against an immunogenic epitope of the PepMV RdRp (anti-RdRp) detected a protein of approximately 164kDa in the membrane-bound and template-dependent RdRp preparations and exclusively inhibited PepMV RNA synthesis when added to the template-dependent in vitro transcription system. The 300 nucleotides long 3'-terminal region of the PepMV genome, containing a stretch of at least 20 adenosine (A) residues, was an adequate exogenous RNA template for RdRp initiation of the minus-strand synthesis but higher transcription efficiency was observed as the number of A residues increased. This observation might indicate a role for the poly(A)-tail in the formation and stabilisation of secondary structure(s) essential for initiation of transcription. The template-dependent specific RdRp system described in this article will facilitate identification of RNA elements and host components required for PepMV RNA synthesis.


Subject(s)
Potexvirus/enzymology , Potexvirus/genetics , RNA, Viral/biosynthesis , RNA, Viral/genetics , RNA-Dependent RNA Polymerase/metabolism , Solanum lycopersicum/virology , Coenzymes/metabolism , Magnesium/metabolism , Plant Extracts/metabolism
14.
Virology ; 367(1): 41-50, 2007 Oct 10.
Article in English | MEDLINE | ID: mdl-17585982

ABSTRACT

The helicase-like domain of BaMV replicase possesses NTPase and RNA 5'-triphosphatase activities. In this study, mutational effects of the helicase signature motifs and residue L543 on the two activities were investigated. Either activity was inactivated by K643A-S644A, D702A, D730A, R855A, or L543P mutations. On the other hand, Q826A, D858A and L543A had activities, in terms of k(cat)/K(m), reduced by 5- to 15-fold. AMPPNP, a nonhydrolyzable ATP analogue, competitively inhibited RNA 5'-triphosphatase activity. Analogies of mutational effects on the two activities and approximation of K(i(AMPPNP)) and K(m(ATP)) suggest that the catalytic sites of the activities are overlapped. Mutational effects on the viral accumulation in Chenopodium quinoa indicated that the activities manifested by the domain are required for BaMV survival. Results also suggest that Q826 in motif V plays an additional role in preventing tight binding to ATP, which would otherwise decrease further RNA 5'-triphosphatase, leading to demise of the virus in plant.


Subject(s)
Acid Anhydride Hydrolases/genetics , DNA Mutational Analysis , Nucleoside-Triphosphatase/genetics , Potexvirus/enzymology , Potexvirus/physiology , RNA Helicases/genetics , Acid Anhydride Hydrolases/chemistry , Acid Anhydride Hydrolases/metabolism , Amino Acid Motifs , Amino Acid Sequence , Chenopodium quinoa/virology , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Viral , Molecular Sequence Data , Nucleoside-Triphosphatase/chemistry , Nucleoside-Triphosphatase/metabolism , Plant Diseases/virology , Plant Leaves/virology , Potexvirus/genetics , RNA Helicases/chemistry , RNA Helicases/metabolism , Sasa/virology
15.
J Gen Virol ; 78 ( Pt 6): 1247-51, 1997 Jun.
Article in English | MEDLINE | ID: mdl-9191915

ABSTRACT

The RNA-dependent RNA polymerase (RdRp) of potato virus X (PVX) contains a glycine-lysine-serine (GKS) motif. This motif is present in the replication enzyme of many RNA viruses and is thought to be required for nucleoside triphosphate-binding. Three single amino acid changes, glycine to alanine (AKS), lysine to asparagine (GNS) and lysine to glutamate (GES) within the GKS motif of the PVX RdRp were tested for their effect on PVX accumulation. The GNS and GES mutations rendered the virus unable to accumulate in either tobacco plants or protoplasts, whereas substitution of glycine with alanine had only a minor effect on accumulation of PVX. The glycine to alanine mutation reverted to wild-type after passage on Nicotiana clevelandii plants. These findings suggest that the GKS motif is required for PVX replication and that strong selection pressures are active to maintain necessary sequences of the viral RdRp.


Subject(s)
Potexvirus/physiology , RNA-Dependent RNA Polymerase/physiology , Virus Replication , Amino Acid Sequence , Base Sequence , Molecular Sequence Data , Point Mutation , Potexvirus/enzymology , RNA-Dependent RNA Polymerase/chemistry , RNA-Dependent RNA Polymerase/genetics , Structure-Activity Relationship
16.
J Virol ; 75(24): 12114-20, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11711602

ABSTRACT

Open reading frame 1 (ORF1) of potexviruses encodes a viral replicase comprising three functional domains: a capping enzyme at the N terminus, a putative helicase in the middle, and a polymerase at the C terminus. To verify the enzymatic activities associated with the putative helicase domain, the corresponding cDNA fragment from bamboo mosaic virus (BaMV) was cloned into vector pET32 and the protein was expressed in Escherichia coli and purified by metal affinity chromatography. An activity assay confirmed that the putative helicase domain has nucleoside triphosphatase activity. We found that it also possesses an RNA 5'-triphosphatase activity that specifically removes the gamma phosphate from the 5' end of RNA. Both enzymatic activities were abolished by the mutation of the nucleoside triphosphate-binding motif (GKS), suggesting that they have a common catalytic site. A typical m(7)GpppG cap structure was formed at the 5' end of the RNA substrate when the substrate was treated sequentially with the putative helicase domain and the N-terminal capping enzyme, indicating that the putative helicase domain is truly involved in the process of cap formation by exhibiting its RNA 5'-triphosphatase activity.


Subject(s)
Acid Anhydride Hydrolases/metabolism , Potexvirus/genetics , RNA Caps/chemistry , RNA Helicases/chemistry , RNA, Viral/chemistry , Nucleoside-Triphosphatase , Potexvirus/enzymology
17.
Virology ; 197(2): 695-703, 1993 Dec.
Article in English | MEDLINE | ID: mdl-8249292

ABSTRACT

The RNA-dependent RNA polymerase (RdRp) of foxtail mosaic virus (FMV) was partially purified from infected leaves of Chenopodium quinoa. The membrane fraction of crude plant extracts contained most of the FMV RdRp activity. Additional purification was obtained by solubilization of the RdRp using KCl and dodecyl-sucrose and by centrifugation through a glycerol gradient. The RNA template endogenous to RdRp preparations could be removed using micrococcal nuclease but the resulting fraction was unable to copy added template purified from FMV virions. However, supplementation of fractions containing RdRp activity with FMV RNA resulted in a significant decrease in the level of RNA synthesis. This effect was specific to potexviral RNAs since a similar interference was also observed with clover yellow mosaic virus RNA but not with brome mosaic virus RNA or yeast RNA. RNA transcripts corresponding to various regions of the FMV genome were tested for their ability to inhibit RNA synthesis on endogenous template. The simultaneous presence of both 5' and 3' terminal regions of the viral genome was necessary to interfere with RNA synthesis suggesting that this inhibition resulted from competition for the binding of component(s) of the RdRp complex.


Subject(s)
Potexvirus/enzymology , RNA-Dependent RNA Polymerase/isolation & purification , Base Sequence , Fabaceae/microbiology , Genome, Viral , Hordeum/microbiology , Micrococcal Nuclease/metabolism , Molecular Sequence Data , Plants/microbiology , Plants, Medicinal , Plasmids , RNA, Messenger/biosynthesis , RNA, Viral/biosynthesis , RNA-Dependent RNA Polymerase/metabolism , Ribonuclease, Pancreatic/metabolism , Single-Strand Specific DNA and RNA Endonucleases/metabolism
18.
J Virol ; 72(12): 10093-9, 1998 Dec.
Article in English | MEDLINE | ID: mdl-9811749

ABSTRACT

Bamboo mosaic virus (BaMV), a member of the potexvirus group, infects primarily members of the Bambusoideae. The open reading frame 1 (ORF1) of BaMV encodes a 155-kDa polypeptide that was postulated to be involved in the replication and the formation of cap structure at the 5' end of the viral genome. To characterize the activities associated with the 155-kDa viral protein, it was expressed in Escherichia coli BL21(DE3) cells with thioredoxin, hexahistidine, and S. Tag fused consecutively at its amino terminus, and the fusion protein was purified by metal affinity chromatography. Several RNA fragments, prepared by in vitro transcription, were tested as substrates for the RNA-dependent RNA polymerase (RdRp) activity. Among them, the expressed fusion enzyme was able to generate a 32P-labeled RNA product when 3'-end RNA fragments of the positive strand or negative strand of BaMV were included in the assay mixture. Dot hybridization assay revealed that the reaction products are complementary to their RNA substrates. Taken together, the evidence suggests that the 155-kDa protein encoded by ORF1 of BaMV has an RdRp activity and should be involved in the replication of BaMV. Mutational analyses demonstrate the importance of the GDD motif in the polymerase activity, and deletion studies suggest that the polymerase activity resides in the carboxyl terminus of the 155-kDa viral protein.


Subject(s)
Escherichia coli/genetics , Potexvirus/enzymology , Potexvirus/genetics , RNA-Dependent RNA Polymerase/genetics , Base Sequence , DNA Primers/genetics , Gene Expression , Mutation , Open Reading Frames , Poaceae/virology , RNA, Viral/genetics , RNA, Viral/metabolism , RNA-Dependent RNA Polymerase/isolation & purification , RNA-Dependent RNA Polymerase/metabolism , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism , Sequence Deletion , Substrate Specificity
19.
J Virol ; 78(3): 1271-80, 2004 Feb.
Article in English | MEDLINE | ID: mdl-14722282

ABSTRACT

Open reading frame 1 of Bamboo mosaic virus (BaMV), a Potexvirus in the alphavirus-like superfamily, encodes a 155-kDa replicase responsible for the formation of the 5' cap structure and replication of the viral RNA genome. The N-terminal domain of the viral replicase functions as an mRNA capping enzyme, which exhibits both GTP methyltransferase and S-adenosylmethionine (AdoMet)-dependent guanylyltransferase activities. We mutated each of the four conserved amino acids among the capping enzymes of members within alphavirus-like superfamily and a dozen of other residues to gain insight into the structure-function relationship of the viral enzyme. The mutant enzymes were purified and subsequently characterized. H68A, the mutant enzyme bearing a substitution at the conserved histidine residue, has an approximately 10-fold increase in GTP methyltransferase activity but completely loses the ability to form the covalent m(7)GMP-enzyme intermediate. High-pressure liquid chromatography analysis confirmed the production of m(7)GTP by the GTP methyltransferase activity of H68A. Furthermore, the produced m(7)GTP sustained the formation of the m(7)GMP-enzyme intermediate for the wild-type enzyme in the presence of S-adenosylhomocysteine (AdoHcy), suggesting that the previously observed AdoMet-dependent guanylation of the enzyme using GTP results from reactions of GTP methylation and subsequently guanylation of the enzyme using m(7)GTP. Mutations occurred at the other three conserved residues (D122, R125, and Y213), and H66 resulted in abolition of activities for both GTP methylation and formation of the covalent m(7)GMP-enzyme intermediate. Mutations of amino acids such as K121, C234, D310, W312, R316, K344, W406, and K409 decreased both activities by various degrees, and the extents of mutational effects follow similar trends. The affinity to AdoMet of the various BaMV capping enzymes, except H68A, was found in good correlations with not only the magnitude of GTP methyltransferase activity but also the capability of forming the m(7)GMP-enzyme intermediate. Taken together with the AdoHcy dependence of guanylation of the enzyme using m(7)GTP, a basic working mechanism, with the contents of critical roles played by the binding of AdoMet/AdoHcy, of the BaMV capping enzyme is proposed and discussed.


Subject(s)
Guanosine Triphosphate/metabolism , Methyltransferases/metabolism , Nucleotidyltransferases/metabolism , Potexvirus/enzymology , RNA Cap Analogs/chemistry , RNA-Dependent RNA Polymerase/chemistry , Amino Acid Sequence , Methylation , Methyltransferases/chemistry , Molecular Sequence Data , Mutagenesis, Site-Directed , Nucleotidyltransferases/chemistry , RNA Cap Analogs/metabolism , RNA Caps/metabolism , RNA, Viral/biosynthesis , RNA-Dependent RNA Polymerase/genetics , RNA-Dependent RNA Polymerase/metabolism , S-Adenosylmethionine/metabolism , Sasa/virology , Structure-Activity Relationship , Virus Replication
20.
Virology ; 296(2): 321-9, 2002 May 10.
Article in English | MEDLINE | ID: mdl-12069530

ABSTRACT

Cell-to-cell and long-distance transport of some plant viruses requires coordinated action of three movement proteins encoded by triple gene block (TGB). The largest of TGB proteins, TGBp1, is a member of the superfamily I of DNA/RNA helicases and possesses a set of conserved helicase sequence motifs necessary for virus movement. A recombinant His-tagged form of TGBp1 of two hordeiviruses and potato virus X, a potexvirus, produced in Escherichia coli had unwinding activity on a partially duplexed RNA, but not DNA substrate. The helicase activity of these proteins was dependent on Mg2+ and ATP. The isolated C-terminal half of the PSLV TGBp1 retaining all helicase motifs was also able to unwind RNA duplex.


Subject(s)
Adenosine Triphosphatases/metabolism , Mosaic Viruses/enzymology , RNA Helicases/metabolism , RNA Viruses/enzymology , RNA, Double-Stranded/metabolism , Viral Proteins/metabolism , Adenosine Triphosphatases/genetics , Amino Acid Sequence , DNA/metabolism , Genes, Viral/physiology , Molecular Sequence Data , Mosaic Viruses/genetics , Plant Viral Movement Proteins , Plant Viruses/enzymology , Plant Viruses/genetics , Potexvirus/enzymology , Potexvirus/genetics , RNA Helicases/genetics , RNA Viruses/genetics , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Sequence Homology, Amino Acid , Viral Proteins/genetics
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