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1.
Int J Mol Sci ; 24(9)2023 May 05.
Article in English | MEDLINE | ID: mdl-37176000

ABSTRACT

Proteus mirabilis is a Gram-negative Gammaproteobacterium and a major causative agent of urinary tract infections in humans. It is characterized by its ability to switch between swimming motility in liquid media and swarming on solid surfaces. Here, we used cryo-electron tomography and subtomogram averaging to reveal the structure of the flagellar motor of P. mirabilis at nanometer resolution in intact cells. We found that P. mirabilis has a motor that is structurally similar to those of Escherichia coli and Salmonella enterica, lacking the periplasmic elaborations that characterize other more specialized gammaproteobacterial motors. In addition, no density corresponding to stators was present in the subtomogram average suggesting that the stators are dynamic. Finally, several assembly intermediates of the motor were seen that support the inside-out assembly pathway.


Subject(s)
Bacterial Proteins , Cryoelectron Microscopy , Electron Microscope Tomography , Flagella , Molecular Motor Proteins , Proteus mirabilis , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Bacterial Proteins/ultrastructure , Escherichia coli/chemistry , Flagella/chemistry , Flagella/metabolism , Flagella/ultrastructure , Proteus mirabilis/chemistry , Proteus mirabilis/cytology , Proteus mirabilis/ultrastructure , Salmonella enterica/chemistry , Molecular Motor Proteins/chemistry , Molecular Motor Proteins/metabolism , Molecular Motor Proteins/ultrastructure
2.
PLoS Pathog ; 16(8): e1008707, 2020 08.
Article in English | MEDLINE | ID: mdl-32780778

ABSTRACT

Proteus mirabilis, a Gram-negative uropathogen, is a major causative agent in catheter-associated urinary tract infections (CAUTI). Mannose-resistant Proteus-like fimbriae (MR/P) are crucially important for P. mirabilis infectivity and are required for biofilm formation and auto-aggregation, as well as for bladder and kidney colonization. Here, the X-ray crystal structure of the MR/P tip adhesin, MrpH, is reported. The structure has a fold not previously described and contains a transition metal center with Zn2+ coordinated by three conserved histidine residues and a ligand. Using biofilm assays, chelation, metal complementation, and site-directed mutagenesis of the three histidines, we show that an intact metal binding site occupied by zinc is essential for MR/P fimbria-mediated biofilm formation, and furthermore, that P. mirabilis biofilm formation is reversible in a zinc-dependent manner. Zinc is also required for MR/P-dependent agglutination of erythrocytes, and mutation of the metal binding site renders P. mirabilis unfit in a mouse model of UTI. The studies presented here provide important clues as to the mechanism of MR/P-mediated biofilm formation and serve as a starting point for identifying the physiological MR/P fimbrial receptor.


Subject(s)
Adhesins, Bacterial/metabolism , Biofilms , Fimbriae Proteins/metabolism , Proteus mirabilis/metabolism , Urinary Tract Infections/microbiology , Zinc/metabolism , Adhesins, Bacterial/chemistry , Adhesins, Bacterial/genetics , Amino Acid Sequence , Fimbriae Proteins/chemistry , Fimbriae Proteins/genetics , Humans , Proteus Infections/metabolism , Proteus Infections/microbiology , Proteus mirabilis/chemistry , Proteus mirabilis/genetics , Sequence Alignment , Urinary Tract Infections/metabolism , Zinc/chemistry
3.
Protein Expr Purif ; 193: 106047, 2022 05.
Article in English | MEDLINE | ID: mdl-35026386

ABSTRACT

Suppressor of copper sensitivity (Scs) proteins play a role in the bacterial response to copper stress in many Gram-negative bacteria, including in the human pathogen Proteus mirabilis. Recently, the ScsC protein from P. mirabilis (PmScsC) was characterized as a trimeric protein with isomerase activity that contributes to the ability of the bacterium to swarm in the presence of copper. The CXXC motif catalytic cysteines of PmScsC are maintained in their active reduced state by the action of its membrane-bound partner protein, the Proteus mirabilis ScsB (PmScsB). Thus, PmScsC and PmScsB form a redox relay in vivo. The predicted domain arrangement of PmScsB comprises a central transmembrane ß-domain and two soluble, periplasmic domains, the N-terminal α-domain and C-terminal γ-domain. Here, we provide a procedure for the recombinant expression and purification of the full-length PmScsB protein. Using Lemo21 (DE3) cells we expressed PmScsB and, after extraction and purification, we were able to achieve a yield of 3 mg of purified protein per 8 L of bacterial culture. Furthermore, using two orthogonal methods - AMS labelling of free thiols and a scrambled RNase A activity assay - PmScsB is shown to catalyze the reduction of PmScsC. Our results demonstrate that the PmScsC and PmScsB redox relay can be reconstituted in vitro using recombinant full-length PmScsB membrane protein. This finding provides a promising starting point for the in vitro biochemical and structural characterization of the P. mirabilis ScsC and ScsB interaction.


Subject(s)
Copper , Proteus mirabilis , Bacterial Proteins/chemistry , Copper/metabolism , Humans , Membrane Proteins/metabolism , Periplasm/metabolism , Proteus mirabilis/chemistry , Proteus mirabilis/genetics , Proteus mirabilis/metabolism
4.
Mikrochim Acta ; 187(7): 406, 2020 06 27.
Article in English | MEDLINE | ID: mdl-32594319

ABSTRACT

Aptamer-modified SiC quantum dots (DNA-SiC QDs) as fluorescent aptasensor are described for the determination of Proteus mirabilis. The SiC QDs were synthesized through one-pot hydrothermal method with particle sizes of about 14 nm. The amino-modified aptamers against P. mirabilis were conjugated to the surfaces of SiC QDs for bacteria recognition. The aptamer with an affinity for target protein can bound to P. mirabilis and this causes a decrease in the fluorescence intensity of DNA-SiC QDs. P. mirabilis levels were tested by the aptasensor within 35 min with fluorescence excitation/emission maxima at 320/420 nm. The linear range is from 103 to 108 CFU mL-1 and the limit of detection is 526 CFU mL-1 (S/N = 3). The aptasensor was used for determination of P. mirabilis in pure milk samples and obtained good accuracy (87.6-104.5%) and recovery rates (85-110.2%) were obtained. The detection in simulated forensic identification samples (pure milk, milk powder, blood, and urine) obtained gave satisfactory coincidence rates with the method of bacterial isolation and identification as standard. These results demonstrate that the fluorescent aptasensor is a potential tool for identification of P. mirabilis in forensic food poisoning cases. Graphical abstract Determination of P. mirabilis is based on SiC QDs fluorescence aptasensor. The SiC QDs with plentiful carboxyl groups on the surface can be synthesized via one-pot hydrothermal route. After activated by EDC/NHS, the SiC QDs can bind to aptamer to form fluorescence aptasensors. When the target P. mirabilis exists, the fluorescence of aptasensor will be quenched and the determination of the P. mirabilis based on the fluorescence change can be analyzed.


Subject(s)
Aptamers, Nucleotide/chemistry , Fluorescent Dyes/chemistry , Proteus mirabilis/isolation & purification , Quantum Dots/chemistry , Animals , Biosensing Techniques/methods , Blood/microbiology , Carbon Compounds, Inorganic/chemistry , DNA/chemistry , Food Contamination/analysis , Humans , Immobilized Nucleic Acids/chemistry , Limit of Detection , Milk/microbiology , Proteus mirabilis/chemistry , Silicon Compounds/chemistry , Spectrometry, Fluorescence , Urine/microbiology
5.
Bull Exp Biol Med ; 169(6): 795-797, 2020 Oct.
Article in English | MEDLINE | ID: mdl-33098506

ABSTRACT

The effects of TLR4 blocker on blood cell morphology, concentrations proinflammatory cytokines, and functional state of the liver and kidneys were studied in outbred male rats (n=60) after intravenous injection of 20 mg/kg LPS isolated from opportunistic Proteus mirabilis strain ATCC 51393. TLR4 blocker TLR4-IN-C34 was injected intravenously in a dose of 1 mg/kg/day over 3 days. Systemic inflammatory reaction induced by LPS was characterized by elevation of serum TNFα, IL-1ß, IL-6, erythrocyte sedimentation rate, leukocytosis, and thrombocytosis. Increased activity of hepatocyte enzymes (ALT, alkaline phosphatase, and lactate dehydrogenase), retention of nitrogen metabolites (urea and creatinine), elevated content of protein oxidation products, and enhanced protein catabolism were also observed. Administration of TLR4 blocker reduced parameters of inflammatory reaction and prevented the development of hypercatabolic syndrome; endotoxicosis and kidney function indicators approached the normal levels.


Subject(s)
Anti-Inflammatory Agents/pharmacology , Leukocytosis/drug therapy , Lipopolysaccharides/antagonists & inhibitors , Pyrans/pharmacology , Sepsis/drug therapy , Thrombocytosis/drug therapy , Toll-Like Receptor 4/antagonists & inhibitors , Alanine Transaminase/blood , Alkaline Phosphatase/blood , Animals , Animals, Outbred Strains , Creatinine/blood , Disease Models, Animal , Gene Expression Regulation , Injections, Intravenous , Interleukin-1beta/blood , Interleukin-1beta/genetics , Interleukin-6/blood , Interleukin-6/genetics , Kidney/drug effects , Kidney/metabolism , Kidney/pathology , L-Lactate Dehydrogenase/blood , Leukocytosis/blood , Leukocytosis/pathology , Lipopolysaccharides/toxicity , Liver/drug effects , Liver/metabolism , Liver/pathology , Male , Proteus mirabilis/chemistry , Rats , Sepsis/blood , Sepsis/pathology , Signal Transduction , Thrombocytosis/blood , Thrombocytosis/pathology , Toll-Like Receptor 4/blood , Toll-Like Receptor 4/genetics , Tumor Necrosis Factor-alpha/blood , Tumor Necrosis Factor-alpha/genetics , Urea/blood
6.
J Bacteriol ; 201(11)2019 06 01.
Article in English | MEDLINE | ID: mdl-30858303

ABSTRACT

Swarming on rigid surfaces requires movement of cells as individuals and as a group of cells. For the bacterium Proteus mirabilis, an individual cell can respond to a rigid surface by elongating and migrating over micrometer-scale distances. Cells can form groups of transiently aligned cells, and the collective population is capable of migrating over centimeter-scale distances. To address how P. mirabilis populations swarm on rigid surfaces, we asked whether cell elongation and single-cell motility are coupled to population migration. We first measured the relationship between agar concentration (a proxy for surface rigidity), single-cell phenotypes, and swarm colony phenotypes. We find that cell elongation and single-cell motility are coupled with population migration on low-percentage hard agar (1% to 2.5%) and become decoupled on high-percentage hard agar (>2.5%). Next, we evaluate how disruptions in lipopolysaccharide (LPS), specifically the O-antigen components, affect responses to hard agar. We find that LPS is not essential for elongation and motility of individual cells, as predicted, and instead functions to broaden the range of agar concentrations on which cell elongation and motility are coupled with population migration. These findings demonstrate that cell elongation and motility are coupled with population migration under a permissive range of surface conditions; increasing agar concentration is sufficient to decouple these behaviors. Since swarm colonies cover greater distances when these steps are coupled than when they are not, these findings suggest that collective interactions among P. mirabilis cells might be emerging as a colony expands outwards on rigid surfaces.IMPORTANCE How surfaces influence cell size, cell-cell interactions, and population migration for robust swarmers like P. mirabilis is not fully understood. Here, we have elucidated how cells change length along a spectrum of sizes that positively correlates with increases in agar concentration, regardless of population migration. Single-cell phenotypes can be decoupled from collective population migration simply by increasing agar concentration. A cell's lipopolysaccharides function to broaden the range of agar conditions under which cell elongation and single-cell motility remain coupled with population migration. In eukaryotes, the physical environment, such as a surface matrix, can impact cell development, shape, and migration. These findings support the idea that rigid surfaces similarly act on swarming bacteria to impact cell shape, single-cell motility, and collective population migration.


Subject(s)
Agar/pharmacology , Lipopolysaccharides/chemistry , Proteus mirabilis/drug effects , Agar/chemistry , Biomechanical Phenomena , Movement/drug effects , Movement/physiology , Phenotype , Proteus mirabilis/chemistry , Proteus mirabilis/physiology , Proteus mirabilis/ultrastructure , Single-Cell Analysis , Surface Properties
7.
J Biol Chem ; 293(16): 5793-5805, 2018 04 20.
Article in English | MEDLINE | ID: mdl-29491145

ABSTRACT

Correct disulfide bond formation is essential for proper folding of many proteins, including bacterial virulence factors. The suppressor of copper sensitivity (Scs) proteins have roles in dithiol/disulfide interchange and the bacterial response to copper stress. Encoded in a four-gene cassette (ScsABCD) present in many Gram-negative bacteria, the Scs proteins are enigmatic and poorly characterized. Here, we show that the periplasmic α-domain of the membrane protein ScsB in the Gram-negative bacterium Proteus mirabilis forms a redox relay with the soluble periplasmic protein PmScsC. We also found that the periplasmic α-domain is sufficient to activate the disulfide isomerase activity of PmScsC. The crystal structure of PmScsBα at a resolution of 1.54 Å revealed that it comprises two structurally similar immunoglobulin-like folds, one of which includes a putative redox-active site with the sequence CXXXC. We confirmed the importance of these cysteine residues for PmScsBα function, and in addition, we engineered cysteine variants that produced a stable complex between PmScsC and PmScsBα. Using small-angle X-ray and neutron scattering analyses with contrast variation, we determined a low-resolution structure of the PmScsC-PmScsBα complex. The structural model of this complex suggested that PmScsBα uses both of its immunoglobulin-like folds to interact with PmScsC and revealed that the highly dynamic PmScsC becomes ordered upon PmScsBα binding. These findings add to our understanding of the poorly characterized Scs proteins.


Subject(s)
Bacterial Proteins/metabolism , Protein Disulfide-Isomerases/metabolism , Proteus mirabilis/metabolism , Amino Acid Sequence , Bacterial Proteins/chemistry , Catalytic Domain , Crystallography, X-Ray , Models, Molecular , Oxidation-Reduction , Protein Conformation , Protein Disulfide-Isomerases/chemistry , Protein Domains , Protein Multimerization , Proteus Infections/microbiology , Proteus mirabilis/chemistry , Sequence Alignment
8.
J Biol Chem ; 293(16): 5806-5807, 2018 04 20.
Article in English | MEDLINE | ID: mdl-29678889

ABSTRACT

Aerobic life brings with it a need to respond to external redox stress in ways that preserve key processes. Suppressor of copper sensitivity (Scs) proteins contribute to this response in some bacteria, but have poorly defined molecular functions. Furlong et al. now demonstrate that two Scs proteins from Proteus mirabilis provide a redox relay functionally equivalent to, but structurally distinct from, the Dsb proteins that orchestrate disulfide bonding in Escherichia coli, emphasizing the wide prevalence of this mechanism in bacteria.


Subject(s)
Bacterial Proteins/metabolism , Copper/metabolism , Disulfides/metabolism , Escherichia coli Proteins/metabolism , Escherichia coli/metabolism , Oxidoreductases/metabolism , Proteus mirabilis/metabolism , Stress, Physiological , Bacteria/metabolism , Bacterial Proteins/chemistry , Disulfides/chemistry , Escherichia coli/chemistry , Escherichia coli Proteins/chemistry , Models, Molecular , Oxidation-Reduction , Oxidoreductases/chemistry , Proteus mirabilis/chemistry
9.
J Sci Food Agric ; 99(8): 4123-4128, 2019 Jun.
Article in English | MEDLINE | ID: mdl-30761541

ABSTRACT

BACKGROUND: Cheese ripening involves a complex series of metabolic reactions and numerous concomitant secondary transformations. Alcohol dehydrogenase (ADH) converts aldehydes into their corresponding alcohols, which enrich cheese aroma. RESULTS: In this study, we identified five ADH genes in Proteus mirabilis JN458, and these genes were overexpressed and characterized in Escherichia coli BL21 (DE3). The optimum pH was 7.0 for the purified recombinant ADH-1, ADH-2, and ADH-3 and 8.0 for ADH-4 and ADH-5. The optimum temperature was 40 °C for ADH-1, ADH-3, and ADH-5 and 45 °C for ADH-2 and ADH-4. The Km value of ADH-1, ADH-2, and ADH-3 was 34.45, 16.90, and 10.01 µmol L-1 for phenylacetaldehyde, respectively. The Km value of ADH-4 and ADH-5 was 14.81 and 24.62 µmol L-1 for 2-methylbutanal, respectively. CONCLUSION: Proteus species play important roles during cheese ripening. The results of our study are important for further research on cheese flavor and for quality control during cheese production. © 2019 Society of Chemical Industry.


Subject(s)
Alcohol Dehydrogenase/metabolism , Alcohols/metabolism , Bacterial Proteins/metabolism , Cheese/microbiology , Flavoring Agents/chemistry , Proteus mirabilis/enzymology , Alcohol Dehydrogenase/chemistry , Alcohol Dehydrogenase/genetics , Alcohols/analysis , Aldehydes/chemistry , Aldehydes/metabolism , Animals , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Cattle , Cheese/analysis , Enzyme Stability , Fermentation , Flavoring Agents/metabolism , Food Microbiology , Humans , Kinetics , Milk/chemistry , Milk/microbiology , Odorants/analysis , Proteus mirabilis/chemistry , Proteus mirabilis/genetics , Proteus mirabilis/metabolism , Taste
10.
Med Microbiol Immunol ; 207(2): 129-139, 2018 Apr.
Article in English | MEDLINE | ID: mdl-29330591

ABSTRACT

The impact of planktonic and biofilm lifestyles of the clinical isolate Proteus mirabilis 9B-m on its lipopolysaccharide (O-polysaccharide, core region, and lipid A) was evaluated. Proteus mirabilis bacteria are able to form biofilm and lipopolysaccharide is one of the factors involved in the biofilm formation. Lipopolysaccharide was isolated from planktonic and biofilm cells of the investigated strain and analyzed by SDS-PAGE with silver staining, Western blotting and ELISA, as well as NMR and matrix-assisted laser desorption ionization time-of-flight mass spectrometry techniques. Chemical and NMR spectroscopic analyses revealed that the structure of the O-polysaccharide of P. mirabilis 9B-m strain did not depend on the form of cell growth, but the full-length chains of the O-antigen were reduced when bacteria grew in biofilm. The study also revealed structural modifications of the core region in the lipopolysaccharide of biofilm-associated cells-peaks assigned to compounds absent in cells from the planktonic culture and not previously detected in any of the known Proteus core oligosaccharides. No differences in the lipid A structure were observed. In summary, our study demonstrated for the first time that changes in the lifestyle of P. mirabilis bacteria leads to the modifications of their important virulence factor-lipopolysaccharide.


Subject(s)
Biofilms/growth & development , Lipopolysaccharides/analysis , Proteus mirabilis/chemistry , Proteus mirabilis/growth & development , Blotting, Western , Electrophoresis, Polyacrylamide Gel , Enzyme-Linked Immunosorbent Assay , Humans , Lipopolysaccharides/isolation & purification , Magnetic Resonance Spectroscopy , Proteus Infections/microbiology , Proteus mirabilis/isolation & purification , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Staining and Labeling
11.
Antonie Van Leeuwenhoek ; 110(11): 1435-1443, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28889208

ABSTRACT

Bacteria of the genus Proteus of the family Enterobacteriaceae are facultative human pathogens responsible mainly for urinary tract and wound infections, bacteremia and the development of rheumatoid arthritis (RA). We have analyzed and compared by ELISA the titer of antibodies in plasmas of healthy individuals and in sera of rheumatoid arthritis patients recognizing a potential host cross-reactive epitope (lysine-galacturonic acid epitopes) present in Proteus lipopolysaccharide (LPS). In our experiments LPSs isolated from two mutants of smooth Proteus mirabilis 1959 (O3), i.e. strains R110 and R45, were used. R110 (Ra type mutant) is lacking the O-specific polysaccharide, but possesses a complete core oligosaccharide, while R45 (Re type) has a reduced core oligosaccharide and contains two 3-deoxy-D-manno-oct-2-ulosonic acid residues and one of 4-amino-4-deoxy-L-arabinopyranose residues. Titer of P. mirabilis S1959 LPS-specific-antibodies increased with the age of blood donors. RA and blood donors' sera contained antibodies against S and Ra and Re type of P. mirabilis O3 LPSs. Antibodies recognizing lysine-galacturonic acid epitopes of O3 LPS were detected by ELISA in some plasmas of healthy individuals and sera of rheumatoid arthritis patients. RA patients antibodies reacting with P. mirabilis S1959 S and R LPSs may indicate a potential role of anti-LPS antibodies in molecular mimicry in RA diseases.


Subject(s)
Antibodies, Bacterial/immunology , Arthritis, Rheumatoid/immunology , Lipopolysaccharides/immunology , O Antigens/immunology , Proteus mirabilis/immunology , Adult , Age Factors , Aged , Antibodies, Bacterial/blood , Arthritis, Rheumatoid/blood , Arthritis, Rheumatoid/microbiology , Enzyme-Linked Immunosorbent Assay , Epitopes/immunology , Female , Humans , Lipopolysaccharides/isolation & purification , Male , Middle Aged , Mutation/immunology , O Antigens/chemistry , Protein Binding/immunology , Proteus mirabilis/chemistry , Proteus mirabilis/genetics , Vaccines, Synthetic/immunology , Young Adult
12.
J Nanosci Nanotechnol ; 17(4): 2329-332, 2017 Apr.
Article in English | MEDLINE | ID: mdl-29641157

ABSTRACT

The objective of this study was to investigate the effect of Mg:Ca ratio in the medium on the formation of low- and high-Mg calcite by aerobic microorganisms enriched from rhodoliths (mainly Proteus mirabilis, Wu Do-1). XRD analyses showed that both low- and high-Mg calcites were formed depending on the Mg:Ca ratio in the medium. Calcite was formed at Ca:Mg ratios of 6:0 and 3:1 and high-Mg calcite was formed at Ca:Mg ratios of 1:1 and 1:3 in the medium. Huntite was formed with a Ca:Mg ratio of 0:6. SEM-EDS analyses showed that the low- and high-Mg calcite crystals had a rhombohedron shape and consisted of Ca, Si and Mg with extracellular polymeric substances (EPS). These results indicate that Wu Do-1 induced precipitation of low- and high-Mg calcite crystals depending on the Ca:Mg ratio in the medium. The carbonate minerals were precipitated on the cell walls and EPS via the accumulation of Ca and/or Mg ions. Therefore, microbial formation of carbonate minerals may play an important role in Ca, Mg, and carbon biogeochemistry as well as CO2 fixation in the natural environments.


Subject(s)
Calcium Carbonate , Calcium , Magnesium , Proteus mirabilis , Rhodophyta , Calcification, Physiologic/physiology , Calcium/chemistry , Calcium/metabolism , Calcium Carbonate/chemistry , Calcium Carbonate/metabolism , Magnesium/chemistry , Magnesium/metabolism , Proteus mirabilis/chemistry , Proteus mirabilis/metabolism , Rhodophyta/chemistry , Rhodophyta/metabolism
13.
Microbiology (Reading) ; 162(5): 789-797, 2016 05.
Article in English | MEDLINE | ID: mdl-26959528

ABSTRACT

A hospitalized 73-year-old woman was infected with a Proteus mirabilis strain, 12 B-r, isolated from the place of injection of a blood catheter. Another strain, 12 B-k, recognized as Proteus genomospecies 5 or 6, was isolated from the patient's faeces, which was an example of a nosocomial infection rather than an auto-infection. Serological investigation using ELISA and Western blotting showed that strain 12 B-k from faeces belonged to the Proteus O2 serogroup. Strain 12 B-r from the wound displayed cross-reactions with several Proteus O serogroups due to common epitopes on the core or O-specific parts of the lipopolysaccharide. Studies of the isolated 12 B-r O-specific polysaccharide by NMR spectroscopy revealed its close structural similarity to that of Proteus O8. The only difference in 12 B-r was the presence of an additional GlcNAc-linked phosphoethanolamine residue, which creates a putative epitope responsible for the cross-reactivity with Pt. mirabilis O16. The new O-antigen form could appear as a result of adaptation of the bacterium to a changing environment. On the basis of the data obtained, we suggest division of the O8 serogroup into two subgroups: O8a for strains of various Proteus species that have been previously classified into the O8 serogroup, and O8a,b for Pt. mirabilis 12 B-r, where 'a' is a common epitope and 'b' is a phosphoethanolamine-associated epitope. These findings further confirm serological and structural heterogeneity of O antigens of Proteus strains isolated lately from patients in Poland.


Subject(s)
O Antigens/chemistry , O Antigens/immunology , Proteus Infections/microbiology , Proteus mirabilis/immunology , Aged , Bacterial Typing Techniques , Catheter-Related Infections/microbiology , Cross Infection/microbiology , Enzyme-Linked Immunosorbent Assay , Ethanolamines/chemistry , Feces/microbiology , Female , Humans , Lipopolysaccharides/immunology , Magnetic Resonance Spectroscopy , Poland , Proteus mirabilis/chemistry , Proteus mirabilis/classification , Proteus mirabilis/isolation & purification , Serogroup , Serotyping
14.
Proc Natl Acad Sci U S A ; 110(43): 17296-301, 2013 Oct 22.
Article in English | MEDLINE | ID: mdl-24101465

ABSTRACT

Most secondary-active transporters transport their substrates using an electrochemical ion gradient. In contrast, the carnitine transporter (CaiT) is an ion-independent, l-carnitine/γ-butyrobetaine antiporter belonging to the betaine/carnitine/choline transporter family of secondary transporters. Recently determined crystal structures of CaiT from Escherichia coli and Proteus mirabilis revealed an inverted five-transmembrane-helix repeat similar to that in the amino acid/Na(+) symporter LeuT. The ion independence of CaiT makes it unique in this family. Here we show that mutations of arginine 262 (R262) make CaiT Na(+)-dependent. The transport activity of R262 mutants increased by 30-40% in the presence of a membrane potential, indicating substrate/Na(+) cotransport. Structural and biochemical characterization revealed that R262 plays a crucial role in substrate binding by stabilizing the partly unwound TM1' helix. Modeling CaiT from P. mirabilis in the outward-open and closed states on the corresponding structures of the related symporter BetP reveals alternating orientations of the buried R262 sidechain, which mimic sodium binding and unbinding in the Na(+)-coupled substrate symporters. We propose that a similar mechanism is operative in other Na(+)/H(+)-independent transporters, in which a positively charged amino acid replaces the cotransported cation. The oscillation of the R262 sidechain in CaiT indicates how a positive charge triggers the change between outward-open and inward-open conformations as a unifying critical step in LeuT-type transporters.


Subject(s)
Antiporters/metabolism , Arginine/metabolism , Bacterial Proteins/metabolism , Proteus mirabilis/metabolism , Sodium/metabolism , Amino Acid Sequence , Antiporters/chemistry , Antiporters/genetics , Arginine/chemistry , Arginine/genetics , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Binding Sites/genetics , Biological Transport/genetics , Carnitine/chemistry , Carnitine/metabolism , Crystallography, X-Ray , Kinetics , Models, Molecular , Molecular Sequence Data , Mutation , Protein Binding , Protein Structure, Secondary , Protein Structure, Tertiary , Proteus mirabilis/chemistry , Proteus mirabilis/genetics , Sequence Homology, Amino Acid , Substrate Specificity
15.
Biochem J ; 463(2): 215-24, 2014 Oct 15.
Article in English | MEDLINE | ID: mdl-25056110

ABSTRACT

In many γ-proteobacteria, the RpoS/σS sigma factor associates with the core RNAP (RNA polymerase) to modify global gene transcription in stationary phase and under stress conditions. The small regulatory protein Crl stimulates the association of σS with the core RNAP in Escherichia coli and Salmonella enterica serovar Typhimurium, through direct and specific interaction with σS. The structural determinants of Crl involved in σS binding are unknown. In the present paper we report the X-ray crystal structure of the Proteus mirabilis Crl protein (CrlPM) and a structural model for Salmonella Typhimurium Crl (CrlSTM). Using a combination of in vivo and in vitro assays, we demonstrated that CrlSTM and CrlPM are structurally similar and perform the same biological function. In the Crl structure, a cavity enclosed by flexible arms contains two patches of conserved and exposed residues required for σS binding. Among these, charged residues that are likely to be involved in electrostatic interactions driving Crl-σS complex formation were identified. CrlSTM and CrlPM interact with domain 2 of σS with the same binding properties as with full-length σS. These results suggest that Crl family members share a common mechanism of σS binding in which the flexible arms of Crl might play a dynamic role.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , DNA-Directed RNA Polymerases/metabolism , Proteus mirabilis/metabolism , Salmonella typhimurium/metabolism , Sigma Factor/metabolism , Amino Acid Motifs , Bacterial Proteins/genetics , Binding Sites , Conserved Sequence , Crystallography, X-Ray , DNA-Directed RNA Polymerases/chemistry , DNA-Directed RNA Polymerases/genetics , Protein Binding , Protein Structure, Tertiary , Proteus mirabilis/chemistry , Proteus mirabilis/enzymology , Proteus mirabilis/genetics , Salmonella typhimurium/chemistry , Salmonella typhimurium/enzymology , Salmonella typhimurium/genetics , Sigma Factor/chemistry , Sigma Factor/genetics
16.
Soft Matter ; 10(1): 88-95, 2014 Jan 07.
Article in English | MEDLINE | ID: mdl-24652584

ABSTRACT

This paper reports an investigation of dynamical behaviors of motile rod-shaped bacteria within anisotropic viscoelastic environments defined by lyotropic liquid crystals (LCs). In contrast to passive microparticles (including non-motile bacteria) that associate irreversibly in LCs via elasticity-mediated forces, we report that motile Proteus mirabilis bacteria form dynamic and reversible multi-cellular assemblies when dispersed in a lyotropic LC. By measuring the velocity of the bacteria through the LC (8.8 ± 0.2 µm s(-1)) and by characterizing the ordering of the LC about the rod-shaped bacteria (tangential anchoring), we conclude that the reversibility of the inter-bacterial interaction emerges from the interplay of forces generated by the flagella of the bacteria and the elasticity of the LC, both of which are comparable in magnitude (tens of pN) for motile Proteus mirabilis cells. We also measured the dissociation process, which occurs in a direction determined by the LC, to bias the size distribution of multi-cellular bacterial complexes in a population of motile Proteus mirabilis relative to a population of non-motile cells. Overall, these observations and others reported in this paper provide insight into the fundamental dynamic behaviors of bacteria in complex anisotropic environments and suggest that motile bacteria in LCs are an exciting model system for exploration of principles for the design of active materials.


Subject(s)
Liquid Crystals/chemistry , Proteus mirabilis/chemistry , Thermodynamics , Cells, Cultured , Proteus mirabilis/cytology , Proteus mirabilis/genetics
17.
Anal Bioanal Chem ; 406(13): 3051-8, 2014 May.
Article in English | MEDLINE | ID: mdl-24705957

ABSTRACT

Based on molecular-specific surface-enhanced Raman scattering (SERS) spectroscopy we were able to discriminate between rough and smooth strains of Escherichia coli and Proteus mirabilis bacteria. For this purpose, bacteria have been immobilized through electrostatic forces by inducing a positive charge on the glass slide. This way, SERS spectra on bacterial biomass and also on single bacteria could be recorded in less than 2 h, by using concentrated silver nanoparticles as SERS-active substrate. Single-bacterium SERS spectral fingerprints showed to be sensitive to the presence of the O-antigen at strain level and to the microorganisms growth phase. By using principal component analysis (PCA) on the SERS spectra recorded from E. coli and P. mirabilis, these two uropathogens could be fairly discriminated.


Subject(s)
Escherichia coli/isolation & purification , Metal Nanoparticles/chemistry , Proteus mirabilis/isolation & purification , Silver/chemistry , Spectrum Analysis, Raman/methods , Urinary Tract Infections/diagnosis , Escherichia coli/chemistry , Humans , Principal Component Analysis , Proteus mirabilis/chemistry , Urinary Tract Infections/microbiology , Urinary Tract Infections/urine
18.
J Microbiol Methods ; 220: 106927, 2024 May.
Article in English | MEDLINE | ID: mdl-38561125

ABSTRACT

Bacterial biofilms form when bacteria attach to surfaces and generate an extracellular matrix that embeds and stabilizes a growing community. Detailed visualization and quantitative analysis of biofilm architecture by optical microscopy are limited by the law of diffraction. Expansion Microscopy (ExM) is a novel Super-Resolution technique where specimens are physically enlarged by a factor of ∼4, prior to observation by conventional fluorescence microscopy. ExM requires homogenization of rigid constituents of biological components by enzymatic digestion. We developed an ExM approach capable of expanding 48-h old Proteus mirabilis biofilms 4.3-fold (termed PmbExM), close to the theoretic maximum expansion factor without gross shape distortions. Our protocol, based on lytic and glycoside-hydrolase enzymatic treatments, degrades rigid components in bacteria and extracellular matrix. Our results prove PmbExM to be a versatile and easy-to-use Super-Resolution approach for enabling studies of P. mirabilis biofilm architecture, assembly, and even intracellular features, such as DNA organization.


Subject(s)
Biofilms , Proteus mirabilis , Proteus mirabilis/chemistry , Bacteria , DNA , Microscopy, Fluorescence
19.
J Biol Chem ; 287(38): 31823-32, 2012 Sep 14.
Article in English | MEDLINE | ID: mdl-22843728

ABSTRACT

CaiT is a homotrimeric antiporter that exchanges l-carnitine (CRN) with γ-butyrobetaine (GBB) across the bacterial membrane. Three structures have been resolved to date for CaiT, all in the inward-facing state: CRN-bound (with four CRNs per subunit), GBB-bound (two GBBs per subunit), and apo. One of the reported binding sites is the counterpart of the primary site observed in structurally similar transporters. However, the mechanism and pathway(s) of CRN/GBB unbinding and translocation, or even the ability of the substrates to dislodge from the reported binding sites, are yet to be determined. To shed light on these issues, we performed a total of 1.3 µs of molecular dynamics simulations and examined the dynamics of substrate-bound CaiT structures under different conditions. We find that both CRN and GBB are able to dissociate completely from their primary site into the cytoplasm. Substrate molecules initially located at the secondary sites dissociate even faster (within tens of nanoseconds) into the extra- or intracellular regions. Interestingly, the unbinding pathway from the primary site appears to be dictated by the geometry of the unwound part of the transmembrane (TM) helix 3, mostly around Thr(100) therein. Arg(262) on TM7, which apparently mimics the role of Na(+) in CaiT structural homologues, plays a key role in triggering the dissociation of the substrate away from the primary site and guiding its release to the cytoplasm provided that the unwound part of TM3 switches from a shielding to a yielding pose.


Subject(s)
Antiporters/chemistry , Betaine/analogs & derivatives , Carnitine/chemistry , Escherichia coli Proteins/chemistry , Arginine/chemistry , Betaine/chemistry , Binding Sites , Biophysics/methods , Computer Simulation , Crystallography, X-Ray/methods , Cytoplasm/metabolism , Models, Molecular , Molecular Conformation , Protein Binding , Protein Conformation , Proteus mirabilis/chemistry , Solvents/chemistry , Substrate Specificity
20.
New Microbiol ; 35(2): 221-5, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22707136

ABSTRACT

This work describes a simple and practical double synergy differential test (DSDT) that couples the detection of ESBLs and AmpC-type enzymes by means of a combo-disk approach using cefotaxime and ceftazidime as indicator substrates, and clavulanate and boronic acid as enzyme inhibitors. The DSDT was tested with a collection of 118 Escherichia coli, Klebsiella pneumoniae and Proteus mirabilis strains with different beta-lactamase profiles, and proved to be highly sensitive and specific for the detection of ESBL and AmpC-producing isolates.


Subject(s)
Bacterial Proteins/analysis , Disk Diffusion Antimicrobial Tests/methods , Escherichia coli/enzymology , Klebsiella pneumoniae/enzymology , Proteus mirabilis/enzymology , beta-Lactamases/analysis , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Enzyme Inhibitors/pharmacology , Escherichia coli/chemistry , Escherichia coli/drug effects , Escherichia coli/genetics , Klebsiella pneumoniae/chemistry , Klebsiella pneumoniae/drug effects , Klebsiella pneumoniae/genetics , Proteus mirabilis/chemistry , Proteus mirabilis/drug effects , Proteus mirabilis/genetics , beta-Lactamase Inhibitors , beta-Lactamases/genetics , beta-Lactamases/metabolism
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