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1.
Genes Dev ; 35(21-22): 1445-1460, 2021 11 01.
Article in English | MEDLINE | ID: mdl-34711653

ABSTRACT

Joubert syndrome (JS) is a recessive ciliopathy in which all affected individuals have congenital cerebellar vermis hypoplasia. Here, we report that CEP120, a JS-associated protein involved in centriole biogenesis and cilia assembly, regulates timely neuronal differentiation and the departure of granule neuron progenitors (GNPs) from their germinal zone during cerebellar development. Our results show that depletion of Cep120 perturbs GNP cell cycle progression, resulting in a delay of cell cycle exit in vivo. To dissect the potential mechanism, we investigated the association between CEP120 interactome and the JS database and identified KIAA0753 (a JS-associated protein) as a CEP120-interacting protein. Surprisingly, we found that CEP120 recruits KIAA0753 to centrioles, and that loss of this interaction induces accumulation of GNPs in the germinal zone and impairs neuronal differentiation. Importantly, the replenishment of wild-type CEP120 rescues the above defects, whereas expression of JS-associated CEP120 mutants, which hinder KIAA0753 recruitment, does not. Together, our data reveal a close interplay between CEP120 and KIAA0753 for the germinal zone exit and timely neuronal differentiation of GNPs during cerebellar development, and mutations in CEP120 and KIAA0753 may participate in the heterotopia and cerebellar hypoplasia observed in JS patients.


Subject(s)
Centrioles , Kidney Diseases, Cystic , Abnormalities, Multiple , Cell Cycle , Cell Cycle Proteins/metabolism , Centrioles/genetics , Centrioles/metabolism , Cerebellum/abnormalities , Cerebellum/metabolism , Eye Abnormalities , Humans , Kidney Diseases, Cystic/genetics , Kidney Diseases, Cystic/metabolism , Microtubule-Associated Proteins , Retina/abnormalities
2.
Hum Mol Genet ; 33(16): 1442-1453, 2024 Aug 06.
Article in English | MEDLINE | ID: mdl-38751342

ABSTRACT

Primary cilia are antenna-like structures protruding from the surface of various eukaryotic cells, and have distinct protein compositions in their membranes. This distinct protein composition is maintained by the presence of the transition zone (TZ) at the ciliary base, which acts as a diffusion barrier between the ciliary and plasma membranes. Defects in cilia and the TZ are known to cause a group of disorders collectively called the ciliopathies, which demonstrate a broad spectrum of clinical features, such as perinatally lethal Meckel syndrome (MKS), relatively mild Joubert syndrome (JBTS), and nonsyndromic nephronophthisis (NPHP). Proteins constituting the TZ can be grouped into the MKS and NPHP modules. The MKS module is composed of several transmembrane proteins and three soluble proteins. TMEM218 was recently reported to be mutated in individuals diagnosed as MKS and JBTS. However, little is known about how TMEM218 mutations found in MKS and JBTS affect the functions of cilia. In this study, we found that ciliary membrane proteins were not localized to cilia in TMEM218-knockout cells, indicating impaired barrier function of the TZ. Furthermore, the exogenous expression of JBTS-associated TMEM218 variants but not MKS-associated variants in TMEM218-knockout cells restored the localization of ciliary membrane proteins. In particular, when expressed in TMEM218-knockout cells, the TMEM218(R115H) variant found in JBTS was able to restore the barrier function of cells, whereas the MKS variant TMEM218(R115C) could not. Thus, the severity of symptoms of MKS and JBTS individuals appears to correlate with the degree of their ciliary defects at the cellular level.


Subject(s)
Abnormalities, Multiple , Cilia , Ciliopathies , Encephalocele , Eye Abnormalities , Kidney Diseases, Cystic , Membrane Proteins , Mutation , Retina , Cilia/metabolism , Cilia/genetics , Cilia/pathology , Humans , Membrane Proteins/genetics , Membrane Proteins/metabolism , Ciliopathies/genetics , Ciliopathies/metabolism , Ciliopathies/pathology , Encephalocele/genetics , Encephalocele/metabolism , Encephalocele/pathology , Kidney Diseases, Cystic/genetics , Kidney Diseases, Cystic/metabolism , Kidney Diseases, Cystic/pathology , Abnormalities, Multiple/genetics , Abnormalities, Multiple/metabolism , Abnormalities, Multiple/pathology , Eye Abnormalities/genetics , Eye Abnormalities/pathology , Eye Abnormalities/metabolism , Retina/metabolism , Retina/abnormalities , Retina/pathology , Cerebellum/abnormalities , Cerebellum/metabolism , Cerebellum/pathology , Cerebellar Diseases/genetics , Cerebellar Diseases/metabolism , Cerebellar Diseases/pathology , Animals , Cell Membrane/metabolism , Mice , Ciliary Motility Disorders , Polycystic Kidney Diseases , Retinitis Pigmentosa
3.
J Cell Sci ; 137(13)2024 07 01.
Article in English | MEDLINE | ID: mdl-38841887

ABSTRACT

Centrosomal proteins play pivotal roles in orchestrating microtubule dynamics, and their dysregulation leads to disorders, including cancer and ciliopathies. Understanding the multifaceted roles of centrosomal proteins is vital to comprehend their involvement in disease development. Here, we report novel cellular functions of CEP41, a centrosomal and ciliary protein implicated in Joubert syndrome. We show that CEP41 is an essential microtubule-associated protein with microtubule-stabilizing activity. Purified CEP41 binds to preformed microtubules, promotes microtubule nucleation and suppresses microtubule disassembly. When overexpressed in cultured cells, CEP41 localizes to microtubules and promotes microtubule bundling. Conversely, shRNA-mediated knockdown of CEP41 disrupts the interphase microtubule network and delays microtubule reassembly, emphasizing its role in microtubule organization. Further, we demonstrate that the association of CEP41 with microtubules relies on its conserved rhodanese homology domain (RHOD) and the N-terminal region. Interestingly, a disease-causing mutation in the RHOD domain impairs CEP41-microtubule interaction. Moreover, depletion of CEP41 inhibits cell proliferation and disrupts cell cycle progression, suggesting its potential involvement in cell cycle regulation. These insights into the cellular functions of CEP41 hold promise for unraveling the impact of its mutations in ciliopathies.


Subject(s)
Cell Proliferation , Microtubules , Humans , Microtubules/metabolism , Microtubule-Associated Proteins/metabolism , Microtubule-Associated Proteins/genetics , Centrosome/metabolism , Retina/metabolism , Retina/pathology , Retina/abnormalities , Ciliopathies/metabolism , Ciliopathies/genetics , Ciliopathies/pathology , Cerebellum/metabolism , Cerebellum/abnormalities , Cerebellum/pathology , Kidney Diseases, Cystic/metabolism , Kidney Diseases, Cystic/genetics , Kidney Diseases, Cystic/pathology , Cilia/metabolism , Cilia/pathology , Cell Cycle Proteins/metabolism , Cell Cycle Proteins/genetics , Animals , Abnormalities, Multiple/metabolism , Abnormalities, Multiple/genetics , Abnormalities, Multiple/pathology , Eye Abnormalities/metabolism , Eye Abnormalities/genetics , Eye Abnormalities/pathology , Protein Binding , Cell Cycle/genetics , HEK293 Cells
4.
Annu Rev Genomics Hum Genet ; 23: 301-329, 2022 08 31.
Article in English | MEDLINE | ID: mdl-35655331

ABSTRACT

The Joubert syndrome (JS), Meckel syndrome (MKS), and nephronophthisis (NPH) ciliopathy spectrum could be the poster child for advances and challenges in Mendelian human genetics over the past half century. Progress in understanding these conditions illustrates many core concepts of human genetics. The JS phenotype alone is caused by pathogenic variants in more than 40 genes; remarkably, all of the associated proteins function in and around the primary cilium. Primary cilia are near-ubiquitous, microtubule-based organelles that play crucial roles in development and homeostasis. Protruding from the cell, these cellular antennae sense diverse signals and mediate Hedgehog and other critical signaling pathways. Ciliary dysfunction causes many human conditions termed ciliopathies, which range from multiple congenital malformations to adult-onset single-organ failure. Research on the genetics of the JS-MKS-NPH spectrum has spurred extensive functional work exploring the broadly important role of primary cilia in health and disease. This functional work promises to illuminate the mechanisms underlying JS-MKS-NPH in humans, identify therapeutic targets across genetic causes, and generate future precision treatments.


Subject(s)
Abnormalities, Multiple , Ciliopathies , Eye Abnormalities , Polycystic Kidney Diseases , Abnormalities, Multiple/genetics , Abnormalities, Multiple/metabolism , Abnormalities, Multiple/pathology , Cerebellum/abnormalities , Cerebellum/metabolism , Cerebellum/pathology , Child , Cilia/genetics , Cilia/metabolism , Cilia/pathology , Ciliary Motility Disorders , Ciliopathies/genetics , Ciliopathies/metabolism , Ciliopathies/pathology , Encephalocele , Eye Abnormalities/genetics , Eye Abnormalities/metabolism , Eye Abnormalities/pathology , Hedgehog Proteins/metabolism , Humans , Kidney Diseases, Cystic , Polycystic Kidney Diseases/genetics , Polycystic Kidney Diseases/metabolism , Polycystic Kidney Diseases/pathology , Retina/abnormalities , Retina/metabolism , Retina/pathology , Retinitis Pigmentosa
5.
J Cell Physiol ; 239(4): e31189, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38219074

ABSTRACT

Joubert syndrome (JBTS) is a systematic developmental disorder mainly characterized by a pathognomonic mid-hindbrain malformation. All known JBTS-associated genes encode proteins involved in the function of antenna-like cellular organelle, primary cilium, which plays essential roles in cellular signal transduction and development. Here, we identified four unreported variants in ARL13B in two patients with the classical features of JBTS. ARL13B is a member of the Ras GTPase family and functions in ciliogenesis and cilia-related signaling. The two missense variants in ARL13B harbored the substitutions of amino acids at evolutionarily conserved positions. Using model cell lines, we found that the accumulations of the missense variants in cilia were impaired and the variants showed attenuated functions in ciliogenesis or the trafficking of INPP5E. Overall, these findings expanded the ARL13B pathogenetic variant spectrum of JBTS.


Subject(s)
ADP-Ribosylation Factors , Abnormalities, Multiple , Cerebellum , Eye Abnormalities , Kidney Diseases, Cystic , Retina , Humans , Abnormalities, Multiple/genetics , ADP-Ribosylation Factors/genetics , ADP-Ribosylation Factors/metabolism , Cerebellum/abnormalities , Cilia/genetics , Eye Abnormalities/genetics , Eye Abnormalities/metabolism , Eye Abnormalities/pathology , Kidney Diseases, Cystic/genetics , Kidney Diseases, Cystic/metabolism , Kidney Diseases, Cystic/pathology , Phosphoric Monoester Hydrolases/metabolism , Retina/metabolism , Retina/abnormalities , Male , Female , Infant
6.
Hum Mol Genet ; 31(19): 3245-3265, 2022 09 29.
Article in English | MEDLINE | ID: mdl-35470378

ABSTRACT

Mutations in Talpid3, a basal body protein essential for the assembly of primary cilia, have been reported to be causative for Joubert Syndrome (JS). Herein, we report prominent developmental defects in the hippocampus of a conditional knockout mouse lacking the conserved exons 11 and 12 of Talpid3. At early postnatal stages, the Talpid3 mutants exhibit a reduction in proliferation in the dentate gyrus and a disrupted glial scaffold. The occurrence of mis-localized progenitors in the granule cell layer suggests a role for the disrupted glial scaffold in cell migration resulting in defective subpial neurogenic zone-to-hilar transition. Neurospheres derived from the hippocampus of Talpid3fl/flUbcCre mouse, in which Talpid3 was conditionally deleted, lacked primary cilia and were smaller in size. In addition, neurosphere cells showed a disrupted actin cytoskeleton and defective migration. Our findings suggest a link between the hippocampal defects and the learning/memory deficits seen in JS patients.


Subject(s)
Abnormalities, Multiple , Eye Abnormalities , Kidney Diseases, Cystic , Abnormalities, Multiple/genetics , Animals , Cerebellum/abnormalities , Dentate Gyrus , Eye Abnormalities/genetics , Hippocampus , Kidney Diseases, Cystic/genetics , Mice , Mice, Knockout , Neurogenesis/genetics , Retina/abnormalities
7.
Ann Hum Genet ; 88(1): 86-100, 2024 01.
Article in English | MEDLINE | ID: mdl-37921557

ABSTRACT

INTRODUCTION: Joubert syndrome (JS) arises from defects of primary cilia resulting in potential malformations of the brain, kidneys, eyes, liver, and limbs. Several of the 35+ genes associated with JS have recognized genotype/phenotype correlations, but most genes have not had enough reported individuals to draw meaningful conclusions. METHODS: A PubMed literature review identified 688 individuals with JS across 32 genes and 112 publications to bolster known genotype/phenotype relationships and identify new correlations. All included patients had the "molar tooth sign" and a confirmed genetic diagnosis. Individuals were categorized by age, ethnicity, sex and the presence of developmental disability/intellectual disability, hypotonia, abnormal eye movements, ataxia, visual impairment, renal impairment, polydactyly, and liver abnormalities. RESULTS: Most genes demonstrated unique phenotypic profiles. Grouping proteins based on physiologic interactions established stronger phenotypic relationships that reflect known ciliary pathophysiology. Age-stratified data demonstrated that end-organ disease is progressive in JS. Most genes demonstrated a significant skew towards having variants with either residual protein function or no residual protein function. CONCLUSION: This cohort demonstrates that clinically meaningful genotype/phenotype relationships exist within most JS-related genes and can be referenced to allow for more personalized clinical care.


Subject(s)
Abnormalities, Multiple , Eye Abnormalities , Kidney Diseases, Cystic , Humans , Abnormalities, Multiple/genetics , Cerebellum/abnormalities , Kidney Diseases, Cystic/genetics , Eye Abnormalities/genetics , Retina/abnormalities , Proteins/genetics , Biological Variation, Population
8.
Development ; 148(9)2021 05 01.
Article in English | MEDLINE | ID: mdl-33960384

ABSTRACT

Angiogenesis in the developing mammalian retina requires patterning cues from astrocytes. Developmental disorders of retinal vasculature, such as retinopathy of prematurity (ROP), involve arrest or mispatterning of angiogenesis. Whether these vascular pathologies involve astrocyte dysfunction remains untested. Here, we demonstrate that the major risk factor for ROP - transient neonatal exposure to excess oxygen - disrupts formation of the angiogenic astrocyte template. Exposing newborn mice to elevated oxygen (75%) suppressed astrocyte proliferation, whereas return to room air (21% oxygen) at postnatal day 4 triggered extensive proliferation, massively increasing astrocyte numbers and disturbing their spatial patterning prior to the arrival of developing vasculature. Proliferation required astrocytic HIF2α and was also stimulated by direct hypoxia (10% oxygen), suggesting that astrocyte oxygen sensing regulates the number of astrocytes produced during development. Along with astrocyte defects, return to room air also caused vascular defects reminiscent of ROP. Strikingly, these vascular phenotypes were more severe in animals that had larger numbers of excess astrocytes. Together, our findings suggest that fluctuations in environmental oxygen dysregulate molecular pathways controlling astrocyte proliferation, thereby generating excess astrocytes that interfere with retinal angiogenesis.


Subject(s)
Astrocytes/metabolism , Cell Proliferation/physiology , Neovascularization, Pathologic/metabolism , Neovascularization, Physiologic/physiology , Oxygen/metabolism , Retina/growth & development , Animals , Animals, Newborn , Astrocytes/cytology , Astrocytes/drug effects , Cell Proliferation/drug effects , Female , Hypoxia/metabolism , Mice , Neovascularization, Physiologic/drug effects , Oxygen/pharmacology , Retina/abnormalities , Retina/metabolism , Retina/pathology , Retinal Vessels/metabolism , Retinopathy of Prematurity
9.
Cell Tissue Res ; 396(2): 255-267, 2024 May.
Article in English | MEDLINE | ID: mdl-38502237

ABSTRACT

Joubert syndrome (JS) is a recessively inherited congenital ataxia characterized by hypotonia, psychomotor delay, abnormal ocular movements, intellectual disability, and a peculiar cerebellar and brainstem malformation, the "molar tooth sign." Over 40 causative genes have been reported, all encoding for proteins implicated in the structure or functioning of the primary cilium, a subcellular organelle widely present in embryonic and adult tissues. In this paper, we developed an in vitro neuronal differentiation model using patient-derived induced pluripotent stem cells (iPSCs), to evaluate possible neurodevelopmental defects in JS. To this end, iPSCs from four JS patients harboring mutations in distinct JS genes (AHI1, CPLANE1, TMEM67, and CC2D2A) were differentiated alongside healthy control cells to obtain mid-hindbrain precursors and cerebellar granule cells. Differentiation was monitored over 31Ā days through the detection of lineage-specific marker expression by qRT-PCR, immunofluorescence, and transcriptomics analysis. All JS patient-derived iPSCs, regardless of the mutant gene, showed a similar impairment to differentiate into mid-hindbrain and cerebellar granule cells when compared to healthy controls. In addition, analysis of primary cilium count and morphology showed notable ciliary defects in all differentiating JS patient-derived iPSCs compared to controls. These results confirm that patient-derived iPSCs are an accessible and relevant in vitro model to analyze cellular phenotypes connected to the presence of JS gene mutations in a neuronal context.


Subject(s)
Abnormalities, Multiple , Cell Differentiation , Cerebellum , Cerebellum/abnormalities , Eye Abnormalities , Induced Pluripotent Stem Cells , Kidney Diseases, Cystic , Neurons , Retina , Retina/abnormalities , Induced Pluripotent Stem Cells/metabolism , Induced Pluripotent Stem Cells/cytology , Humans , Eye Abnormalities/genetics , Eye Abnormalities/pathology , Cerebellum/pathology , Cerebellum/metabolism , Neurons/metabolism , Abnormalities, Multiple/genetics , Abnormalities, Multiple/pathology , Retina/metabolism , Kidney Diseases, Cystic/genetics , Kidney Diseases, Cystic/pathology , Kidney Diseases, Cystic/metabolism , Male , Female , Mutation/genetics , Cilia/metabolism
10.
Cerebellum ; 23(2): 579-588, 2024 Apr.
Article in English | MEDLINE | ID: mdl-37351729

ABSTRACT

The neuropsychological characteristics of the cerebellar cognitive affective syndrome (CCAS) in congenital, non-progressive malformations of the cerebellum have been scarcely investigated, and even less is known for Joubert syndrome (JS), an inherited, non-progressive cerebellar ataxia characterized by the so-called molar tooth sign. The few studies on this topic reported inconsistent results about intellectual functioning and specific neuropsychological impairments. The aim of this research is to examine the neuropsychological profile of JS compared to other congenital cerebellar malformations (CM), considering individual variability of intellectual quotient (IQ) in the two groups. Fourteen patients with JS and 15 patients with CM aged 6-25 years were tested through a comprehensive, standardized neuropsychological battery. Their scores in the neuropsychological domains were inspected through descriptive analysis and compared by mean of MANOVA and ANOVA models, then replicated inserting IQ as covariate. The two groups showed a largely overlapping neuropsychological profile, consistent with CCAS. However, the JS group showed worse performance in visual-spatial memory compared to CM patients, although this difference was mitigated when considering IQ. These findings highlight a divergence between JS and other CM in visual-spatial memory, which might suggest a critical role of the cerebellum in recalling task-relevant memories and might inform rehabilitative interventions.


Subject(s)
Abnormalities, Multiple , Cerebellar Diseases , Cerebellum/abnormalities , Eye Abnormalities , Kidney Diseases, Cystic , Retina/abnormalities , Humans , Abnormalities, Multiple/psychology , Kidney Diseases, Cystic/genetics , Kidney Diseases, Cystic/psychology , Eye Abnormalities/psychology
11.
Exp Brain Res ; 242(3): 619-637, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38231387

ABSTRACT

Cilia are organelles extend from cells to sense external signals for tuning intracellular signaling for optimal cellular functioning. They have evolved sensory and motor roles in various cells for tissue organization and homeostasis in development and post-development. More than a thousand genes are required for cilia function. Mutations in them cause multisystem disorders termed ciliopathies. The null mutations in CC2D2A result in Meckel syndrome (MKS), which is embryonic lethal, whereas patients who have missense mutations in the C2 domain of CC2D2A display Joubert syndrome (JBTS). They survive with blindness and mental retardation. How C2 domain defects cause disease conditions is not understood. To answer this question, C2 domain of Cc2d2a (mice gene) was knocked down (KD) in IMCD-3 cells by shRNA. This resulted in defective cilia morphology observed by immunofluorescence analysis. To further probe the cellular signaling alteration in affected cells, gene expression profiling was done by RNAseq and compared with the controls. Bioinformatics analysis revealed that the differentially expressed genes (DEGs) have functions in cilia. Among the 61 cilia DEGs identified, 50 genes were downregulated and 11 genes were upregulated. These cilia genes are involved in cilium assembly, protein trafficking to the cilium, intraflagellar transport (IFT), cellular signaling like polarity patterning, and Hedgehog signaling pathway. This suggests that the C2 domain of CC2D2A plays a critical role in cilia assembly and molecular signaling hosted in cilia for cellular homeostasis. Taken together, the missense mutations in the C2 domain of CC2D2A seen in JBTS might have affected cilia-mediated signaling in neurons of the retina and brain.


Subject(s)
Abnormalities, Multiple , Cerebellum , Eye Abnormalities , Kidney Diseases, Cystic , Polycystic Kidney Diseases , Retina , Animals , Mice , Abnormalities, Multiple/genetics , Abnormalities, Multiple/metabolism , C2 Domains , Cerebellum/metabolism , Cerebellum/abnormalities , Cilia/genetics , Cilia/metabolism , Cytoskeletal Proteins/genetics , Eye Abnormalities/genetics , Eye Abnormalities/metabolism , Hedgehog Proteins/genetics , Hedgehog Proteins/metabolism , Mutation/genetics , Polycystic Kidney Diseases/genetics , Polycystic Kidney Diseases/metabolism , Retina/abnormalities
12.
Dev Med Child Neurol ; 66(7): 948-957, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38247023

ABSTRACT

Hydrocephalus is rarely described in Joubert-Boltshauser syndrome (JBTS). The aim of this study was to investigate whether this association is a chance occurrence or potentially signifies a new phenotypic subtype. The databases of Wolfson Medical Center, Sourasky Medical Center, and EB's personal collection were reviewed. Records from an additional family were obtained from RG. The patients' medical records, prenatal ultrasounds, and magnetic resonance imaging were assessed. In addition, we reviewed the medical literature for the association of ventriculomegaly/hydrocephalus (VM/HC) in JBTS. Only seven cases (from five families) were found with prenatal onset of VM/HC, diagnosed during the second trimester; three pregnancies were terminated, one was stillborn and three were born, of which one died within a week, and another died at the age of 6 years. Additional central nervous system findings included dysgenesis of the corpus callosum, delayed sulcation, polymicrogyria, and pachygyria. We found 16 publications describing 54 patients with JBTS and VM/HC: only five were diagnosed at birth and three were diagnosed prenatally. Hydrocephalus is extremely rare in JBTS. The recurrence of this association, reported in several publications in multiple family members, suggests that it might represent a new phenotypic subtype of JBTS possibly associated with specific genes or variants. Further genetic studies are needed to confirm this hypothesis. WHAT THIS PAPER ADDS: The association of fetal hydrocephalus with Joubert-Boltshauser syndrome (JBTS) is very rare but not a chance association. This association represents a new phenotypic subtype of JBTS possibly linked to specific genes or variants.


Subject(s)
Abnormalities, Multiple , Cerebellum , Eye Abnormalities , Hydrocephalus , Kidney Diseases, Cystic , Retina , Humans , Hydrocephalus/diagnostic imaging , Hydrocephalus/complications , Cerebellum/abnormalities , Cerebellum/diagnostic imaging , Eye Abnormalities/complications , Eye Abnormalities/diagnostic imaging , Abnormalities, Multiple/diagnostic imaging , Female , Kidney Diseases, Cystic/complications , Kidney Diseases, Cystic/diagnostic imaging , Kidney Diseases, Cystic/genetics , Male , Retina/abnormalities , Retina/diagnostic imaging , Cerebellar Vermis/abnormalities , Cerebellar Vermis/diagnostic imaging , Magnetic Resonance Imaging , Phenotype , Cerebellar Diseases/diagnostic imaging , Cerebellar Diseases/complications , Child , Infant, Newborn
13.
J Med Genet ; 60(9): 885-893, 2023 09.
Article in English | MEDLINE | ID: mdl-36788019

ABSTRACT

BACKGROUND: Joubert syndrome (JS) is a neurodevelopmental ciliopathy characterised by a distinctive mid-hindbrain malformation, the 'molar tooth sign'. Over 40 JS-associated genes are known, accounting for two-thirds of cases. METHODS: While most variants are novel or extremely rare, we report on 11 recurring variants in seven genes, including three known 'founder variants' in the Ashkenazi Jewish, Hutterite and Finnish populations. We evaluated variant frequencies in ~550 European patients with JS and compared them with controls (>15 000 Italian plus gnomAD), and with an independent cohort of ~600 JS probands from the USA. RESULTS: All variants were markedly enriched in the European JS cohort compared with controls. When comparing allele frequencies in the two JS cohorts, the Ashkenazim founder variant (TMEM216 c.218G>T) was significantly enriched in American compared with European patients with JS, while MKS1 c.1476T>G was about 10 times more frequent among European JS. Frequencies of other variants were comparable in the two cohorts. Genotyping of several markers identified four novel European founder haplotypes.Two recurrent variants (MKS1 c.1476T>G and KIAA0586 c.428delG), have been detected in homozygosity in unaffected individuals, suggesting they could act as hypomorphic variants. However, while fibroblasts from a MKS1 c.1476T>G healthy homozygote showed impaired ability to form primary cilia and mildly reduced ciliary length, ciliary parameters were normal in cells from a KIAA0586 c.428delG healthy homozygote. CONCLUSION: This study contributes to understand the complex genetic landscape of JS, explain its variable prevalence in distinct geographical areas and characterise two recurrent hypomorphic variants.


Subject(s)
Abnormalities, Multiple , Eye Abnormalities , Kidney Diseases, Cystic , Humans , Cerebellum/abnormalities , Abnormalities, Multiple/genetics , Eye Abnormalities/genetics , Kidney Diseases, Cystic/genetics , Retina/abnormalities
14.
Int J Mol Sci ; 25(14)2024 Jul 19.
Article in English | MEDLINE | ID: mdl-39063141

ABSTRACT

KIAA0586 variants have been associated with a wide range of ciliopathies, mainly Joubert syndrome (JS, OMIM #616490) and short-rib thoracic dysplasia syndrome (SRTD, OMIM #616546). However, the hypothesis that this gene is involved with hydrolethalus syndrome (HSL, OMIM #614120) and orofaciodigital syndrome IV (OMIM #258860) has already been raised. Ciliopathies' clinical features are often overlapped despite differing in phenotype severity. Besides KIAA0586, HYLS1 and KIF7 are also known for being causative of ciliopathies, indicating that all three genes may have similar or converging genomic pathways. Overall, the genotypic and phenotypic spectrum of ciliopathies becomes wider and conflicting while more and more new variants are added to this group of disorders' molecular pot. In this case report we discuss the first Brazilian individual clinically diagnosed with hydrolethalus syndrome and molecular findings that demonstrate the role of KIAA0586 as a causative gene of a group of genetic disorders. Also, recent reports on individuals with intronic and exonic variants combined leading to ciliopathies support our patient's molecular diagnosis. At the same time, we discuss variable expressivity and overlapping features in ciliopathies.


Subject(s)
Abnormalities, Multiple , Cerebellum , Eye Abnormalities , Kidney Diseases, Cystic , Phenotype , Retina , Humans , Eye Abnormalities/genetics , Eye Abnormalities/pathology , Kidney Diseases, Cystic/genetics , Abnormalities, Multiple/genetics , Retina/abnormalities , Retina/pathology , Retina/metabolism , Cerebellum/abnormalities , Cerebellum/pathology , Ciliopathies/genetics , Male , Mutation , Female , Cell Cycle Proteins
15.
Zhonghua Yi Xue Yi Chuan Xue Za Zhi ; 41(8): 957-961, 2024 Aug 10.
Article in Zh | MEDLINE | ID: mdl-39097279

ABSTRACT

OBJECTIVE: To explore the clinical characteristics and genetic basis for a fetus with Joubert syndrome. METHODS: A pregnant woman who had visited Suzhou Municipal Hospital on February 26, 2021 was selected as the study subject. The fetus and her parents were subjected to whole exome sequencing (WES), and candidate variants were verified by Sanger sequencing. cDNA analysis of her father and RNA sequencing of her sister were also carried out. RESULTS: The fetus was found to harbor compound heterozygous variants of the TCTN1 gene, namely c.624G>A and c.96dupA (p.Glu33Argfs*49), which were inherited from her father and mother, respectively. Her sister also carried the paternal c.624G>A variant, and mRNA transcripts with the c.624G>A variant of the TCTN1 gene were not detected by cDNA analysis of her father and RNA sequencing of her sister. Based on the guidelines from the American College of Medical Genetics and Genomics (ACMG), the c.624G>A and c.96dupA variants were both classified as likely pathogenic (PVS1+PM2_Supporting). CONCLUSION: The compound heterozygous variants of the TCTN1 gene probably underlay the pathogenesis in this fetus. Above finding has also expanded the mutational spectrum of the TCTN1 gene.


Subject(s)
Abnormalities, Multiple , Cerebellum , Eye Abnormalities , Fetus , Kidney Diseases, Cystic , Adult , Female , Humans , Male , Pregnancy , Abnormalities, Multiple/genetics , Cerebellum/abnormalities , Exome Sequencing , Eye Abnormalities/genetics , Fetus/abnormalities , Heterozygote , Kidney Diseases, Cystic/genetics , Membrane Proteins/genetics , Mutation , Retina/abnormalities , Prenatal Diagnosis
16.
Am J Med Genet A ; 191(8): 2156-2163, 2023 08.
Article in English | MEDLINE | ID: mdl-37227088

ABSTRACT

Joubert syndrome (JBTS) is a Mendelian disorder of the primary cilium defined by the clinical triad of hypotonia, developmental delay, and a distinct cerebellar malformation called the molar tooth sign. JBTS is inherited in an autosomal recessive, autosomal dominant, or X-linked recessive manner. Though over 40 genes have been identified as causal for JBTS, molecular diagnosis is not made in 30%-40% of individuals who meet clinical criteria. TOPORS encodes topoisomerase I-binding arginine/serine-rich protein, and homozygosity for a TOPORS missense variant (c.29C > A; p.(Pro10Gln)) was identified in individuals with the ciliopathy oral-facial-digital syndrome in two families of Dominican descent. Here, we report an additional proband of Dominican ancestry with JBTS found by exome sequencing to be homozygous for the identical p.(Pro10Gln) TOPORS missense variant. Query of the Mount Sinai BioMe biobank, which includes 1880 individuals of Dominican ancestry, supports a high carrier frequency of the TOPORS p.(Pro10Gln) variant in individuals of Dominican descent. Our data nominates TOPORS as a novel causal gene for JBTS and suggests that TOPORS variants should be considered in the differential of ciliopathy-spectrum disease in individuals of Dominican ancestry.


Subject(s)
Abnormalities, Multiple , Ciliopathies , Eye Abnormalities , Kidney Diseases, Cystic , Nervous System Malformations , Humans , Cerebellum/abnormalities , Abnormalities, Multiple/diagnosis , Abnormalities, Multiple/genetics , Abnormalities, Multiple/metabolism , Eye Abnormalities/diagnosis , Eye Abnormalities/genetics , Retina/abnormalities , Kidney Diseases, Cystic/diagnosis , Kidney Diseases, Cystic/genetics , Mutation , Ciliopathies/genetics
17.
Neuropediatrics ; 54(3): 217-221, 2023 06.
Article in English | MEDLINE | ID: mdl-35642300

ABSTRACT

Joubert syndrome (JS) is a genetic neurodevelopmental disorder characterized by lower brainstem dysplasia and cerebellar vermis agenesis termed molar tooth sign (MTS), psychomotor retardation, abnormal respiratory pattern in infancy, and oculomotor abnormalities. Arima syndrome (AS), which is a severe form of JS, is characterized by severe psychomotor retardation, congenital visual impairment, progressive renal dysfunction, and lower brainstem dysplasia from early infancy. Numerous patients with AS expire in early childhood. Recently, c.6012-12T> A in the CEP290 gene was reported as a specific variant of AS. Herein, we report the cases of two siblings showing a phenotype of JS with compound heterozygous mutations (c.6012-12T > A / c.5924delT) in the CEP290 gene. The older sister (aged 19 years) had hypotonia, hypertelorism, and anteverted nares since birth. As a neonate, she developed a transient abnormal respiratory pattern and nystagmus, and brain magnetic resonance imaging (MRI) showed MTS. The younger sister (aged 13 years) exhibited mild hypotonia and pendular nystagmus as a neonate; MRI revealed MTS. Both sisters had psychomotor retardation, oculomotor dysfunction, and bilateral renal cysts with normal renal function. They can walk and have simple conversation. They do not meet the diagnostic criteria for AS, and their symptoms were milder than those of previously reported cases with this specific mutation. This report indicates the expanding spectrum of the CEP290 variant.


Subject(s)
Abnormalities, Multiple , Eye Abnormalities , Polycystic Kidney Diseases , Child, Preschool , Female , Humans , Abnormalities, Multiple/diagnostic imaging , Abnormalities, Multiple/genetics , Antigens, Neoplasm/genetics , Cell Cycle Proteins/genetics , Cerebellum/pathology , Cytoskeletal Proteins/genetics , Eye Abnormalities/diagnostic imaging , Eye Abnormalities/genetics , Muscle Hypotonia , Phenotype , Polycystic Kidney Diseases/pathology , Retina/abnormalities , Siblings
18.
J Med Genet ; 59(9): 888-894, 2022 Sep.
Article in English | MEDLINE | ID: mdl-34675124

ABSTRACT

BACKGROUND: Joubert syndrome (JS) is a recessively inherited ciliopathy characterised by congenital ocular motor apraxia (COMA), developmental delay (DD), intellectual disability, ataxia, multiorgan involvement, and a unique cerebellar and brainstem malformation. Over 40 JS-associated genes are known with a diagnostic yield of 60%-75%.In 2018, we reported homozygous hypomorphic missense variants of the SUFU gene in two families with mild JS. Recently, heterozygous truncating SUFU variants were identified in families with dominantly inherited COMA, occasionally associated with mild DD and subtle cerebellar anomalies. METHODS: We reanalysed next generation sequencing (NGS) data in two cohorts comprising 1097 probands referred for genetic testing of JS genes. RESULTS: Heterozygous truncating and splice-site SUFU variants were detected in 22 patients from 17 families (1.5%) with strong male prevalence (86%), and in 8 asymptomatic parents. Patients presented with COMA, hypotonia, ataxia and mild DD, and only a third manifested intellectual disability of variable severity. Brain MRI showed consistent findings characterised by vermis hypoplasia, superior cerebellar dysplasia and subtle-to-mild abnormalities of the superior cerebellar peduncles. The same pattern was observed in two out of three tested asymptomatic parents. CONCLUSION: Heterozygous truncating or splice-site SUFU variants cause a novel neurodevelopmental syndrome encompassing COMA and mild JS, which likely represent overlapping entities. Variants can arise de novo or be inherited from a healthy parent, representing the first cause of JS with dominant inheritance and reduced penetrance. Awareness of this condition will increase the diagnostic yield of JS genetic testing, and allow appropriate counselling about prognosis, medical monitoring and recurrence risk.


Subject(s)
Abnormalities, Multiple , Cerebellar Ataxia , Eye Abnormalities , Intellectual Disability , Kidney Diseases, Cystic , Abnormalities, Multiple/genetics , Cerebellar Ataxia/genetics , Cerebellum/abnormalities , Cerebellum/diagnostic imaging , Eye Abnormalities/genetics , Haploinsufficiency/genetics , Humans , Intellectual Disability/genetics , Kidney Diseases, Cystic/diagnosis , Kidney Diseases, Cystic/genetics , Male , Phenotype , Repressor Proteins/genetics , Retina/abnormalities
19.
BMC Pediatr ; 23(1): 590, 2023 11 23.
Article in English | MEDLINE | ID: mdl-37993833

ABSTRACT

BACKGROUND: Joubert syndrome (JS) is a rare genetically heterogeneous primary ciliopathy characterized by a pathognomonic cerebellar and brainstem malformation, the "molar tooth sign", and variable organ involvement (such as eye, kidney, liver, and skeleton). Here, we present a case of JS in a Chinese boy. CASE PRESENTATION: An 11-year-old Chinese boy presented with neonatal asphyxiation and hypoxia, strabismus, subsequent developmental delay, ataxia and end-stage kidney disease (ESKD). Routine blood tests showed severe anemia, increasing blood urea nitrogen and creatinine, elevated parathyroid hormone, hypocalcemia, hypokalemia and metabolic acidosis. Urine tests showed mild proteinuria. Ultrasound showed two small kidneys. Brain magnetic resonance imaging (MRI) showed dysplasia of the cerebellar vermis and extension of the upper cerebellar feet with the "molar tooth sign". Genetic analysis showed novel compound heterozygous mutations in the RPGRIP1L gene [p.L447fs*7(p.Leu447fsTer7) and p.G908V (p.Gly908Val)]. CONCLUSION: In the present study, we identified novel compound heterozygous mutations in the RPGRIP1L gene in a Chinese boy. The clinical and genetic findings of this study will expand the understanding of JS.


Subject(s)
Abnormalities, Multiple , Eye Abnormalities , Kidney Diseases, Cystic , Child , Humans , Male , Abnormalities, Multiple/genetics , Adaptor Proteins, Signal Transducing/genetics , Cerebellum/diagnostic imaging , Cerebellum/abnormalities , East Asian People , Eye Abnormalities/complications , Eye Abnormalities/genetics , Kidney Diseases, Cystic/complications , Kidney Diseases, Cystic/diagnostic imaging , Kidney Diseases, Cystic/genetics , Mutation , Retina/abnormalities
20.
Proc Natl Acad Sci U S A ; 117(2): 1113-1118, 2020 01 14.
Article in English | MEDLINE | ID: mdl-31879347

ABSTRACT

Genetic and phenotypic heterogeneity and the lack of sufficiently large patient cohorts pose a significant challenge to understanding genetic associations in rare disease. Here we identify Bsnd (alias Barttin) as a genetic modifier of cystic kidney disease in Joubert syndrome, using a Cep290-deficient mouse model to recapitulate the phenotypic variability observed in patients by mixing genetic backgrounds in a controlled manner and performing genome-wide analysis of these mice. Experimental down-regulation of Bsnd in the parental mouse strain phenocopied the severe cystic kidney phenotype. A common polymorphism within human BSND significantly associates with kidney disease severity in a patient cohort with CEP290 mutations. The striking phenotypic modifications we describe are a timely reminder of the value of mouse models and highlight the significant contribution of genetic background. Furthermore, if appropriately managed, this can be exploited as a powerful tool to elucidate mechanisms underlying human disease heterogeneity.


Subject(s)
Abnormalities, Multiple/genetics , Cerebellum/abnormalities , Chloride Channels/genetics , Chloride Channels/metabolism , Eye Abnormalities/genetics , Genes, Modifier , Kidney Diseases, Cystic/genetics , Retina/abnormalities , Animals , Antigens, Neoplasm/genetics , Cell Cycle Proteins/genetics , Cytoskeletal Proteins/genetics , Disease Models, Animal , Genetic Predisposition to Disease/genetics , Kidney Diseases , Mice , Mice, Inbred C57BL , Mutation , Phenotype , Polymorphism, Single Nucleotide , Severity of Illness Index
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