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1.
Antonie Van Leeuwenhoek ; 117(1): 75, 2024 May 03.
Article in English | MEDLINE | ID: mdl-38700529

ABSTRACT

Biogenic nanoparticles (NPs) have emerged as promising therapeutic formulations in effective drug delivery. Despite of various positive attributes, these NPs are often conjugated with various cytotoxic organic fluorophores for bioimaging, thereby reducing its effectiveness as a potential carrier. Herein, we aim to formulate biogenic fluorescent pigmented polyhydroxybutyrate (PHB) NPs from Rhodanobacter sp. strain KT31 (OK001852) for drug delivery. The bacterial strain produced 0.5 g L-1 of polyhydroxyalkanoates (PHAs) from 2.04 g L-1 of dry cell weight (DCW) under optimised conditions via submerged fermentation. Further, structural, thermal, and morphological charactersiation of the extracted PHAs was conducted using advance analytical technologies. IR spectra at 1719.25 cm-1 confirmed presence of C = O functional group PHB. NMR and XRD analysis validated the chemical structure and crystallinity of PHB. TG-DTA revealed Tm (168 °C), Td (292 °C), and Xc (35%) of the PHB. FE-SEM imaging indicated rough surface of the PHB film and the biodegradability was confirmed from open windro composting. WST1 assay showed no significant cell death (> 50%) from 100 to 500 µg/mL, endorsing non-cytotoxic nature of PHB. PHB NPs were uniform, smooth and spherical with size distribution and mean zeta potential 44.73 nm and 0.5 mV. IR and XRD peaks obtained at 1721.75 cm-1 and 48.42 Å denoted C = O and crystalline nature of PHB. Cell proliferation rate of PHB NPs was quite significant at 50 µg/mL, establishing the non-cytotoxic nature of NPs. Further, in vitro efficacy of the PHB NPs needs to be evaluated prior to the biomedical applications.


Subject(s)
Nanoparticles , Polyhydroxyalkanoates , Prohibitins , Nanoparticles/chemistry , Polyhydroxyalkanoates/chemistry , Polyhydroxyalkanoates/metabolism , Drug Delivery Systems , Hydroxybutyrates/chemistry , Hydroxybutyrates/metabolism , Humans , Rhodospirillaceae/metabolism , Rhodospirillaceae/chemistry , Drug Carriers/chemistry
2.
World J Microbiol Biotechnol ; 37(9): 161, 2021 Aug 26.
Article in English | MEDLINE | ID: mdl-34436687

ABSTRACT

Shortage of water, energy, and bioresources in the world has led to the exploration of new technologies that achieve resource recovery from wastewater, which has become a new sustainable trend. Photosynthetic non-sulfur bacteria (PNSB), the most ancient photo microorganism, not only treats different wastewater types, but also generates PNSB cells, which are non-toxic bioresources and containing many value-added products. These bioresources can be used as raw materials in the agricultural, food, and medical industries. Therefore, PNSB or PNSB-based wastewater resource recovery technology can be simultaneously used to treat wastewater and produce useful bioresources. Compared with traditional wastewater treatment, this technology can reduce CO2 emissions, promote the N recovery ratio and prevent residual sludge disposal or generation. After being developed for over half a century, PNSB wastewater resource recovery technology is currently extended towards industrial applications. Here, this technology is comprehensively introduced in terms of (1) PNSB characteristics and metabolism; (2) PNSB wastewater treatment and bioresource recovery efficiency; (3) the relative factors influencing the performance of this technology, including light, oxygen, strains, wastewater types, hydraulic retention time, on wastewater treatment, and resource production; (4) PNSB value-added bioresources and their generation from wastewater; (5) the scale-up history of PNSB technology; (6) Finally, the future perspectives and challenges of this technology were also analysed and summarised.


Subject(s)
Rhodospirillaceae/metabolism , Wastewater/microbiology , Water Purification/methods , Biodegradation, Environmental , Bioreactors/microbiology , Wastewater/chemistry , Water Purification/instrumentation
3.
World J Microbiol Biotechnol ; 35(8): 129, 2019 Aug 02.
Article in English | MEDLINE | ID: mdl-31376017

ABSTRACT

Metal whole-cell biosensors (WCBs) have been reported as very useful tools to detect and quantify the presence of bioavailable fractions of certain metals in water and soil samples. In the current work, two bacterial WCBs able to report Cr(VI) presence and plants growing on Cr(VI)-enriched soil/medium were used to assess the potential transfer of this metal to organisms of higher trophic levels, and the risk of transfer to the food chain. To do it, the functionality of the WCBs within tissues of inoculated plants in contact with Cr(VI)-contaminated soil and water was studied in vitro and in a controlled greenhouse environment. One WCB was the previously described Ochrobactrum tritici pCHRGFP2 and the second, Nitrospirillum amazonense pCHRGFP2, is a newly engineered naturally-occurring endophytic microorganism. Three rice varieties (IAC 4440, BRS 6 CHUÍ, IRGA 425) and one maize variety (1060) were tested as hosts and subjected to Cr(VI) treatments (25 µM), with different results obtained. Inoculation of each WCB into plants exposed to Cr(VI) showed GFP expression within plant tissues. WCBs penetrated the root tissues and later colonized the shoots and leaves. In general, a higher fluorescence signal was detected in roots, together with a higher Cr content and denser WCB colonization. Best fluorescence intensities per plant biomass of shoots were obtained for plant host IRGA 425. Therefore, by analyzing colonized tissues, both WCBs allowed the detection of Cr(VI) contamination in soils and its transfer to plants commonly used in crops for human diet.


Subject(s)
Biosensing Techniques/methods , Chromium/analysis , Ochrobactrum/growth & development , Oryza/chemistry , Rhodospirillaceae/growth & development , Zea mays/chemistry , Biological Availability , Metabolic Engineering , Microscopy, Fluorescence , Ochrobactrum/genetics , Ochrobactrum/metabolism , Oryza/growth & development , Oryza/microbiology , Rhodospirillaceae/genetics , Rhodospirillaceae/metabolism , Soil Pollutants/analysis , Water Pollutants, Chemical/analysis , Zea mays/growth & development , Zea mays/microbiology
4.
Prep Biochem Biotechnol ; 48(4): 303-311, 2018 Apr 21.
Article in English | MEDLINE | ID: mdl-29424655

ABSTRACT

This experiment aimed to decolorize Reactive Red 159 using a high potential of a consortium of purple nonsulfur bacteria (PNSB) with an application of response surface methodology through a central composite design in open system. The three factors of hydraulic retention time (HRT), sludge retention time (SRT) and dye concentration were applied to the design. The decolorization was operated in an anaerobic sequencing batch reactor until the system reached to a pseudosteady state for 30 cycles in each experiment. The optimal condition was 6,500 mg/L of Reactive Red 159 concentration with 20 days of SRT and 8 days of HRT, achieving dye effluent of 142.62 ± 5.35 mg/L, decolorization rate of 264.54 ± 7.13 mg/L/h and decolorization efficiency of 97.68 ± 0.74%. The results revealed that PNSB efficiently decolorized the high concentration of Reactive Red 159 and they were a high potential of microorganisms for dyes contaminated wastewater treatment.


Subject(s)
Bioreactors/microbiology , Coloring Agents/isolation & purification , Rhodospirillaceae/metabolism , Sewage/analysis , Sewage/microbiology , Water Pollutants, Chemical/isolation & purification , Water Purification/methods , Coloring Agents/metabolism , Water Pollutants, Chemical/metabolism
5.
Environ Microbiol ; 19(7): 2843-2861, 2017 07.
Article in English | MEDLINE | ID: mdl-28585283

ABSTRACT

Phytoplankton have been shown to harbour a diversity of hydrocarbonoclastic bacteria (HCB), yet it is not understood how these phytoplankton-associated HCB would respond in the event of an oil spill at sea. Here, we assess the diversity and dynamics of the bacterial community associated with a natural population of marine phytoplankton under oil spill-simulated conditions, and compare it to that of the free-living (non phytoplankton-associated) bacterial community. While the crude oil severely impacted the phytoplankton population and was likely conducive to marine oil snow formation, analysis of the MiSeq-derived 16S rRNA data revealed dramatic and differential shifts in the oil-amended communities that included blooms of recognized HCB (e.g., Thalassospira, Cycloclasticus), including putative novel phyla, as well as other groups with previously unqualified oil-degrading potential (Olleya, Winogradskyella, and members of the inconspicuous BD7-3 phylum). Notably, the oil biodegradation potential of the phytoplankton-associated community exceeded that of the free-living community, and it showed a preference to degrade substituted and non-substituted polycyclic aromatic hydrocarbons. Our study provides evidence of compartmentalization of hydrocarbon-degrading capacity in the marine water column, wherein HCB associated with phytoplankton are better tuned to degrading crude oil hydrocarbons than that by the community of planktonic free-living bacteria.


Subject(s)
Biodegradation, Environmental , Flavobacteriaceae/metabolism , Petroleum/metabolism , Phytoplankton/microbiology , Piscirickettsiaceae/metabolism , Polycyclic Aromatic Hydrocarbons/metabolism , Rhodospirillaceae/metabolism , Flavobacteriaceae/genetics , Petroleum Pollution , Piscirickettsiaceae/genetics , RNA, Ribosomal, 16S/genetics , Rhodospirillaceae/genetics
6.
J Basic Microbiol ; 57(4): 316-324, 2017 Apr.
Article in English | MEDLINE | ID: mdl-28054716

ABSTRACT

This study aimed to identify arsenic resistant mechanisms in As-resistant purple nonsulfur bacteria (PNSB) by screening them for presence of As-resistance genes and related enzymes. Resistance to As(III) and As(V) of four As-resistant PNSB determined in terms of median inhibition concentration (IC50 values) were in the order of strains Rhodopseudomonas palustris C1 > R. palustris AB3 > Rubrivivax benzoatilyticus C31 > R. palustris L28 which corresponded to the presence of As-resistance genes in these bacteria. The strain C1 showed all As-marker genes; arsC, arsM, aioA, and acr3, while aioA was not detected in strain AB3. Strains C31 and L28 had only Arsenite-transporter gene, acr3. Translation of all these detected gene sequences of strain C1 to amino acid sequences showed that these proteins have vicinal cysteine; Cys126, Cys105, and Cys178 of Acr3, ArsC, AioA, respectively. Tertiary structure of proteins Acr3, ArsC, AioA, and ArsM showed strain C1 exhibits the high activities of arsenite oxidase and arsenate reductase enzymes that are encoded by aioA and arsC genes, respectively. Moreover, strain C1 with arsM gene produced volatile-methylated As-compounds; monomethylarsonic acid (MMA), dimethylarsenic acid (DMA), and arsenobetaine (AsB) in the presence of either As(III) or As(V). In conclusion, the strain C1 has great potential for its application in bioremediation of As-contaminated sites.


Subject(s)
Arsenates/pharmacology , Arsenic/metabolism , Arsenites/pharmacology , Genes, Bacterial , Protein Structure, Tertiary , Rhodospirillaceae/drug effects , Rhodospirillaceae/genetics , Arsenate Reductases/metabolism , Arsenates/metabolism , Arsenicals/metabolism , Arsenites/metabolism , Biodegradation, Environmental , Cacodylic Acid/metabolism , Gene Expression Regulation, Bacterial , Oxidoreductases/metabolism , Rhodopseudomonas/drug effects , Rhodopseudomonas/genetics , Rhodopseudomonas/isolation & purification , Rhodospirillaceae/isolation & purification , Rhodospirillaceae/metabolism
7.
Antonie Van Leeuwenhoek ; 109(8): 1091-100, 2016 Aug.
Article in English | MEDLINE | ID: mdl-27180097

ABSTRACT

Two Gram-negative, non-pigmented, motile bacteria were isolated from a sea water sample collected at St. Kilda Beach, Port Philip Bay, Victoria, Australia. The two strains were found to grow between 4 and 40 °C, pH 5-10 and tolerate up to 10 % NaCl. A phylogenetic study, based on a 16S rRNA gene sequence analysis indicated that strains NP 3b2(T) and H 94 belong to the genus Thalassospira. The sequence similarity of the 16S rRNA gene between the two new isolates is 99.8 % and between these strains and all validly named Thalassospira species was found to be in the range of 95-99.4 %. The DNA-DNA relatedness between the two strains was found to be 80.2 %, while relatedness with other validly named species of the genus Thalassospira was between 53 and 65 %. The average nucleotide identity (ANI) and the in silico genome-to-genome distance (GGD) between the two bacteria and T. profundimaris WP0211(T), T. xiamenensis M-5(T), 'T. permensis' NBRC 106175(T) and T. lucentensis QMT2(T) was 76-82 % and 21-25 %, respectively. The results of phylogenetic and genomic analysis, together with physiological and biochemical properties, indicated that the two strains represent a new species of the genus Thalassospira. Based on these data, a new species, Thalassospira australica, is proposed with strain NP 3b2(T) (=KMM 6365(T) = JCM 31222(T)) as the type strain.


Subject(s)
Rhodospirillaceae/classification , Rhodospirillaceae/isolation & purification , Seawater/microbiology , Australia , Base Composition , DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Fatty Acids/metabolism , Nucleic Acid Hybridization , Phylogeny , RNA, Ribosomal, 16S/genetics , Rhodospirillaceae/genetics , Rhodospirillaceae/metabolism , Sequence Analysis, DNA , Species Specificity
8.
Arch Biochem Biophys ; 572: 158-166, 2015 Apr 15.
Article in English | MEDLINE | ID: mdl-25536050

ABSTRACT

Stark absorption spectroscopy was applied to clarify the structural differences between carotenoids bound to the B800-820 and B800-850 LH2 complexes from a purple photosynthetic bacterium Phaeospirillum (Phs.) molischianum DSM120. The former complex is produced when the bacteria are grown under stressed conditions of low temperature and dim light. These two LH2 complexes bind carotenoids with similar composition, 10% lycopene and 80% rhodopin, each with the same number of conjugated CC double bonds (n=11). Quantitative classical and semi-quantum chemical analyses of Stark absorption spectra recorded in the carotenoid absorption region reveal that the absolute values of the difference dipole moments |Δµ| have substantial differences (2 [D/f]) for carotenoids bound to either B800-820 or B800-850 complexes. The origin of this striking difference in the |Δµ| values was analyzed using the X-ray crystal structure of the B800-850 LH2 complex from Phs. molischianum DSM119. Semi-empirical molecular orbital calculations predict structural deformations of the major carotenoid, rhodopin, bound within the B800-820 complex. We propose that simultaneous rotations around neighboring CC and CC bonds account for the differences in the 2 [D/f] of the |Δµ| value. The plausible position of the rotation is postulated to be located around C21-C24 bonds of rhodopin.


Subject(s)
Absorption, Physicochemical , Carotenoids/chemistry , Carotenoids/metabolism , Light-Harvesting Protein Complexes/metabolism , Photosynthesis , Rhodospirillaceae/metabolism , Spectrum Analysis , Amino Acid Sequence , Light-Harvesting Protein Complexes/chemistry , Molecular Sequence Data
9.
Int J Syst Evol Microbiol ; 64(Pt 1): 107-115, 2014 Jan.
Article in English | MEDLINE | ID: mdl-24021727

ABSTRACT

Two marine bacteria, designated strains MBE#61(T) and MBE#74(T), were isolated from a piece of sunken bamboo in the marine environment in Japan. Both of these strains were Gram-stain-negative, but had different cell shapes: MBE#61(T) was spiral, whereas MBE#74(T) was rod-shaped. The temperature, pH and salt concentration ranges for growth of strain MBE#61(T) were 4-38 °C (optimal at 32 °C), pH 4.5-11.0 (optimal at pH 7.0-8.0) and 1-11 % (optimal at 2 %) NaCl, whereas those of strain MBE#74(T) were 4-36 °C (optimal at 30 °C), pH 4.0-10.5 (optimal at pH 7.0-8.0) and 1-12 % (optimal at 4 %) NaCl. Phylogenetic analysis based on partial 16S rRNA gene sequences revealed that both strains belong to the genus Thalassospira within the class Alphaproteobacteria. Similarity between the 16S rRNA gene sequence of strain MBE#61(T) and those of the type strains of species of the genus Thalassospira was 97.5-99.0 %, and that of strain MBE#74(T) was 96.9-98.6 %; these two isolates were most closely related to Thalassospira lucentensis QMT2(T). However, the DNA-DNA hybridization values between T. lucentensis QMT2(T) and strain MBE#61(T) or MBE#74(T) were only 16.0 % and 7.1 %, respectively. The DNA G+C content of strain MBE#61(T) was 54.4 mol%, and that of strain MBE#74(T) was 55.9 mol%. The predominant isoprenoid quinone of the two strains was Q-10 (MBE#61(T), 97.3 %; MBE#74(T), 93.5 %). The major cellular fatty acids of strain MBE#61(T) were C18 : 1ω7c (31.1 %), summed feature 3 comprising C16 : 0ω7c/iso-C15 : 0 2-OH (26.1 %) and C16 : 0 (20.9 %); those of strain MBE#74(T) were C16 : 0 (26.2 %), C17 : 0 cyclo (19.9 %) and C18 : 1ω7c (12.1 %). On the basis of these results, strain MBE#61(T) and strain MBE#74(T) are considered to represent novel species of the genus Thalassospira, for which names Thalassospira alkalitolerans sp. nov. and Thalassospira mesophila sp. nov. are proposed. The type strains are MBE#61(T) ( = JCM 18968(T) = CECT 8273(T)) and MBE#74(T) ( = JCM 18969(T) = CECT 8274(T)), respectively. An emended description of the genus Thalassospira is also proposed.


Subject(s)
Alphaproteobacteria/classification , Bambusa/microbiology , Phylogeny , Seawater/microbiology , Alphaproteobacteria/genetics , Alphaproteobacteria/isolation & purification , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Geologic Sediments/microbiology , Japan , Molecular Sequence Data , Nucleic Acid Hybridization , RNA, Ribosomal, 16S/genetics , Rhodospirillaceae/genetics , Rhodospirillaceae/metabolism , Sequence Analysis, DNA , Ubiquinone/chemistry
10.
Microb Ecol ; 68(4): 716-28, 2014 Nov.
Article in English | MEDLINE | ID: mdl-24889288

ABSTRACT

Glycogen-accumulating organisms (GAOs) may compete with phosphate-accumulating organisms (PAOs) for short-chain fatty acids (VFAs) in anaerobic polyhydroxyalkanoates (PHA) synthesis, but no consequently aerobic polyphosphate accumulation in enhanced biological phosphorus removal (EBPR) process, thus deteriorating the EBPR process. They are detected frequently in the deteriorated EBPR process, but their metabolisms are still far from our comprehensions for there is seldom pure culture. In this study, a nearly complete draft genome of a GAOs in Defluviicoccus cluster II, GAO-HK, is recruited from the metagenome of activated sludge in a full-scale industrial anoxic/aerobic wastewater plant. Comparative genomics reveal similar metabolisms of PHA and glycogen in GAOs of GAO-HK, Defluviicoccus tetraformis TFO71 (TFO71) and Competibacter phosphatis clade IIA (CPIIA), and PAOs of Accumulibacter clade IIA UW-1 (UW-1) and Tetrasphaera elongata Lp2 (Lp2). Although there are similar gene cassettes related with polyphosphate metabolism in these GAOs and PAOs, especially for Defluviicoccus-relative bacteria and UW-1, ppk1 in GAOs are diverse from those in the identified PAOs, implying the difference of polyphosphate metabolism in GAOs and PAOs. Additionally, genes related to the dissimilatory denitrification are absent in TFO71 and GAO-HK, implying that additional nitrate or nitrite may favor PAOs over Defluviicoccus-relative GAOs. Therefore, PAOs suffering from competition of Defluviicoccus-relative GAOs might be rescued with the additional nitrate/nitrite, which is important to improve the stability of EBPR processes.


Subject(s)
Genome, Bacterial , Rhodospirillaceae/genetics , Sewage/microbiology , China , DNA, Bacterial/genetics , DNA, Bacterial/metabolism , Genomics , Glycogen/metabolism , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics , RNA, Ribosomal, 16S/metabolism , Rhodospirillaceae/metabolism , Sequence Analysis, DNA
11.
Environ Technol ; 35(21-24): 2961-72, 2014.
Article in English | MEDLINE | ID: mdl-25189844

ABSTRACT

Microbial selection in an enhanced biological phosphorus removal system was investigated in a laboratory-scale sequencing batch reactor fed exclusively with butyrate as a carbon source. As reported in the few previous studies, butyrate uptake was slow and phosphorus (P) release occurred during the entire anaerobic period. Polyphosphate-accumulating organism (PAO), i.e. Candidatus Accumulibacter phosphatis (named as Accumulibacter), glycogen-accumulating organisms (GAOs), i.e. Candidatus Competibacter phosphatis (named as Competibacter) and Defluviicoccus-related, tetrad-forming alphaproteobacteria (named as Defluviicoccus) were identified using fluorescence in situ hybridization analysis. The results show that Accumulibacter and Defluviicoccus were selected in the butyrate-fed reactor, whereas Competibacter was not selected. P removal was efficient at the beginning of the experiment with an increasing percentage relative abundance (% RA) of PAOs. The % RA of Accumulibacter and Defluviicoccus increased from 13% to 50% and 8% to 16%, respectively, and the % RA of Competibacter decreased from 8% to 2% during the experiment. After 6 weeks, P removal deteriorated with the poor correlation between the percentage of P removal and % RA of GAOs.


Subject(s)
Betaproteobacteria/metabolism , Bioreactors/microbiology , Butyrates/metabolism , Phosphorus/metabolism , Rhodospirillaceae/metabolism , Water Pollutants, Chemical/metabolism , Betaproteobacteria/genetics , Gammaproteobacteria/genetics , Gammaproteobacteria/metabolism , In Situ Hybridization, Fluorescence , Rhodospirillaceae/genetics , Waste Disposal, Fluid
12.
J Am Chem Soc ; 135(3): 1155-62, 2013 Jan 23.
Article in English | MEDLINE | ID: mdl-23270364

ABSTRACT

Thalassospiramides A and B are immunosuppressant cyclic lipopeptides first reported from the marine α-proteobacterium Thalassospira sp. CNJ-328. We describe here the discovery and characterization of an extended family of 14 new analogues from four Tistrella and Thalassospira isolates. These potent calpain 1 protease inhibitors belong to six structure classes in which the length and composition of the acylpeptide side chain varies extensively. Genomic sequence analysis of the thalassospiramide-producing microbes revealed related, genus-specific biosynthetic loci encoding hybrid nonribosomal peptide synthetase/polyketide synthases consistent with thalassospiramide assembly. The bioinformatics analysis of the gene clusters suggests that structural diversity, which ranges from the 803.4 Da thalassospiramide C to the 1291.7 Da thalassospiramide F, results from a complex sequence of reactions involving amino acid substrate channeling and enzymatic multimodule skipping and iteration. Preliminary biochemical analysis of the N-terminal nonribosomal peptide synthetase module from the Thalassospira TtcA megasynthase supports a biosynthetic model in which in cis amino acid activation competes with in trans activation to increase the range of amino acid substrates incorporated at the N terminus.


Subject(s)
Aquatic Organisms/chemistry , Glycoproteins/chemistry , Peptides, Cyclic/chemistry , Rhodospirillaceae/chemistry , Aquatic Organisms/metabolism , Calpain/antagonists & inhibitors , Computational Biology , Glycoproteins/metabolism , Glycoproteins/pharmacology , Humans , Molecular Conformation , Peptides, Cyclic/metabolism , Peptides, Cyclic/pharmacology , Rhodospirillaceae/metabolism , Stereoisomerism , Structure-Activity Relationship
13.
Appl Environ Microbiol ; 79(8): 2823-7, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23396329

ABSTRACT

The growth and magnetosome production of the marine magnetotactic vibrio Magnetovibrio blakemorei strain MV-1 were optimized through a statistics-based experimental factorial design. In the optimized growth medium, maximum magnetite yields of 64.3 mg/liter in batch cultures and 26 mg/liter in a bioreactor were obtained.


Subject(s)
Bioreactors , Magnetosomes/metabolism , Rhodospirillaceae/growth & development , Rhodospirillaceae/metabolism , Bacterial Proteins/metabolism , Culture Media , Ferrosoferric Oxide/metabolism , Magnetic Fields , Research Design , Water Microbiology
14.
Int J Syst Evol Microbiol ; 63(Pt 5): 1824-1833, 2013 May.
Article in English | MEDLINE | ID: mdl-22984137

ABSTRACT

A magnetotactic bacterium, designated strain MV-1(T), was isolated from sulfide-rich sediments in a salt marsh near Boston, MA, USA. Cells of strain MV-1(T) were Gram-negative, and vibrioid to helicoid in morphology. Cells were motile by means of a single polar flagellum. The cells appeared to display a transitional state between axial and polar magnetotaxis: cells swam in both directions, but generally had longer excursions in one direction than the other. Cells possessed a single chain of magnetosomes containing truncated hexaoctahedral crystals of magnetite, positioned along the long axis of the cell. Strain MV-1(T) was a microaerophile that was also capable of anaerobic growth on some nitrogen oxides. Salinities greater than 10 % seawater were required for growth. Strain MV-1(T) exhibited chemolithoautotrophic growth on thiosulfate and sulfide with oxygen as the terminal electron acceptor (microaerobic growth) and on thiosulfate using nitrous oxide (N2O) as the terminal electron acceptor (anaerobic growth). Chemo-organoautotrophic and methylotrophic growth was supported by formate under microaerobic conditions. Autotrophic growth occurred via the Calvin-Benson-Bassham cycle. Chemo-organoheterotrophic growth was supported by various organic acids and amino acids, under microaerobic and anaerobic conditions. Optimal growth occurred at pH 7.0 and 26-28 °C. The genome of strain MV-1(T) consisted of a single, circular chromosome, about 3.7 Mb in size, with a G+C content of 52.9-53.5 mol%.Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain MV-1(T) belongs to the family Rhodospirillaceae within the Alphaproteobacteria, but is not closely related to the genus Magnetospirillum. The name Magnetovibrio blakemorei gen. nov., sp. nov. is proposed for strain MV-1(T). The type strain of Magnetovibrio blakemorei is MV-1(T) ( = ATCC BAA-1436(T)  = DSM 18854(T)).


Subject(s)
Phylogeny , Rhodospirillaceae/classification , Seawater/microbiology , Wetlands , Bacterial Typing Techniques , Base Composition , Boston , Chemoautotrophic Growth , DNA, Bacterial/genetics , Magnetosomes/microbiology , Molecular Sequence Data , Photosynthesis , RNA, Ribosomal, 16S/genetics , Rhodospirillaceae/genetics , Rhodospirillaceae/isolation & purification , Rhodospirillaceae/metabolism , Sequence Analysis, DNA , Sodium Chloride
15.
Lett Appl Microbiol ; 57(5): 420-6, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23837648

ABSTRACT

As a consequence of the large-scale cultivation of Stevia plants, releases of plant residues, the byproduct after sweetener extraction, to the environment are inevitable. Stevia residue and its effluent after batching up contain large amounts of organic matters with small molecular weight, which therefore are a potential pollution source. Meanwhile, they are favourite substrates for micro-organism growths. This investigation was aimed to utilize the simulated effluent of Stevia residue to enrich the representative purple nonsulfur bacterium (PNSB), Rhodopseudomonas palustris (Rps. palustris), which has important economic values. The growth profile and quality of Rps. palustris were characterized by spectrophotometry, compared to those grown in common PNSB mineral synthetic medium. Our results revealed that the simulated effluent of Stevia residue not only stimulated Rps. palustris growth to a greater extent, but also increased its physiologically active cytochrome concentrations and excreted indole-3-acetic acid (IAA) content. This variation in phenotype of Rps. palustris could result from the shift in its genotype, further revealed by the repetitive sequence-based PCR (rep-PCR) fingerprinting analysis. Our results showed that the effluent of Stevia residue was a promising substrate for microbial growth.


Subject(s)
Rhodopseudomonas/metabolism , Rhodospirillaceae/metabolism , Stevia , Sweetening Agents/metabolism , Indoleacetic Acids/metabolism , Phenotype , Rhodopseudomonas/chemistry , Rhodopseudomonas/genetics , Rhodopseudomonas/growth & development , Rhodospirillaceae/genetics , Rhodospirillaceae/growth & development
16.
Proc Natl Acad Sci U S A ; 107(12): 5357-62, 2010 Mar 23.
Article in English | MEDLINE | ID: mdl-20212143

ABSTRACT

We have investigated the adaptation of the light-harvesting system of the photosynthetic bacterium Phaeospirillum molischianum (DSM120) to very low light conditions. This strain is able to respond to changing light conditions by differentially modulating the expression of a family of puc operons that encode for peripheral light-harvesting complex (LH2) polypeptides. This modulation can result in a complete shift between the production of LH2 complexes absorbing maximally near 850 nm to those absorbing near 820 nm. In contradiction to prevailing wisdom, analysis of the LH2 rings found in the photosynthetic membranes during light adaptation are shown to have intermediate spectral and electrostatic properties. By chemical cross-linking and mass-spectrometry we show that individual LH2 rings and subunits can contain a mixture of polypeptides derived from the different operons. These observations show that polypeptide synthesis and insertion into the membrane are not strongly coupled to LH2 assembly. We show that the light-harvesting complexes resulting from this mixing could be important in maintaining photosynthetic efficiency during adaptation.


Subject(s)
Light-Harvesting Protein Complexes/chemistry , Light-Harvesting Protein Complexes/metabolism , Rhodospirillaceae/metabolism , Cross-Linking Reagents , Light , Models, Molecular , Photosynthesis , Rhodospirillaceae/radiation effects , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
17.
J Bacteriol ; 194(13): 3559-60, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22689244

ABSTRACT

Here we present the draft genome sequence of the versatile and adaptable purple photosynthetic bacterium Phaeospirillum molischianum DSM120. This study advances the understanding of the adaptability of this bacterium, as well as the differences between the Phaeospirillum and Rhodospirillum genera.


Subject(s)
Genome, Bacterial , Photosynthesis , Rhodospirillaceae/genetics , Sequence Analysis, DNA , Bacterial Proteins/genetics , Molecular Sequence Data , Rhodospirillaceae/classification , Rhodospirillaceae/metabolism , Rhodospirillaceae/physiology
18.
J Bacteriol ; 194(24): 6956, 2012 Dec.
Article in English | MEDLINE | ID: mdl-23209215

ABSTRACT

Thalassospira profundimaris WP0211(T) was isolated from a pyrene-degrading consortium, enriched from deep-sea sediment collected from the West Pacific Ocean. Here, we present the draft genome of strain WP0211(T), which contains 4,380,232 bp with a G+C content of 55.19% and contains 4,040 protein-coding genes and 45 tRNAs.


Subject(s)
Genome, Bacterial , Geologic Sediments/microbiology , Rhodospirillaceae/genetics , Bacterial Typing Techniques , Base Composition , Biodegradation, Environmental , DNA, Bacterial/genetics , Molecular Sequence Data , Phylogeny , Pyrenes/metabolism , Rhodospirillaceae/isolation & purification , Rhodospirillaceae/metabolism , Seawater , Sequence Analysis, DNA
19.
Int J Syst Evol Microbiol ; 62(Pt 6): 1271-1276, 2012 Jun.
Article in English | MEDLINE | ID: mdl-21784960

ABSTRACT

A Gram-negative, aerobic, motile, rod-shaped, antimony-resistant bacterium, designated strain SB22(T), was isolated from soil of Jixi coal mine, China. The major cellular fatty acids (>5 %) were C(18:1)ω7c (63.5 %), summed feature 2 (C(14:0) 3-OH and/or iso-C(16:1) I, 10.8 %) and C(16:0) (9.9 %). The major polar lipids were diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and an unknown aminolipid. The genomic DNA G+C content was 69.6 mol% and Q-10 was the major respiratory quinone. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain SB22(T) was most closely related to Skermanella aerolata 5416T-32(T) (97.3 %), Skermanella parooensis ACM 2042(T) (95.8 %) and Skermanella xinjiangensis 10-1-101(T) (92.9 %). The DNA-DNA hybridization value between strain SB22(T) and S. aerolata KACC 11604(T) ( = 5416T-32(T)) was 43.3 %. On the basis of phenotypic, chemotaxonomic and phylogenetic characteristics of strain SB22(T) and related species, it is considered that the isolate represents a novel species of the genus Skermanella, for which the name Skermanella stibiiresistens sp. nov. is proposed. The type strain is SB22(T) ( = CGMCC 1.10751(T) = KCTC 23364(T)). An emended description of the genus Skermanella is provided.


Subject(s)
Antimony/metabolism , Rhodospirillaceae/classification , Rhodospirillaceae/isolation & purification , Soil Microbiology , Base Composition , China , Coal Mining , DNA, Bacterial/genetics , Fatty Acids/metabolism , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics , Rhodospirillaceae/genetics , Rhodospirillaceae/metabolism
20.
Microbiol Immunol ; 56(1): 21-6, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22145860

ABSTRACT

The genus Enhydrobacter, first reported as a member of the family Vibrionaceae, has been placed in the family Moraxellaceae, but as a genus incertae sedis in Bergey's Manual of Systematic Bacteriology 2nd edition. During our taxonomic investigation of Enhydrobacter-like organisms, we observed that the 16S rRNA sequences of E. aerosaccus-type strain versions NCIMB 12535(T) , ATCC 27094( T) and CCUG 58314(T) were very different from the accessible data (accession no. AJ550856). Phylogenetic analysis of our 16S rRNA sequence data revealed that these organisms were located within the family Rhodospirillaceae. The genera Inquilinus, Oceanibaculum, Skermanella and Nisaea were closely related (sequence similarities were 88.3~87.0%), but Enhydrobacter could be distinguished from these genera by growth characteristics, fatty acid profiles (C(19:0) cyclo ω8c; 38.4% C(18:1) ω7c; 32.2%, and C(16:0) ; 8.9% were major components), in being non-flagellated, and differing in enzymatic activities, including trypsin and ß-glucosidase. From these data, we conclude that the genus Enhydrobacter should be recognized as an independent genus of the family Rhodospirillaceae within the class Alphaproteobacteria.


Subject(s)
Alphaproteobacteria/classification , Moraxellaceae/classification , RNA, Ribosomal, 16S/genetics , Rhodospirillaceae/classification , Alphaproteobacteria/genetics , Alphaproteobacteria/growth & development , Alphaproteobacteria/metabolism , Bacterial Typing Techniques , Enzyme Activation , Fatty Acids/metabolism , Genes, rRNA , Moraxellaceae/genetics , Moraxellaceae/growth & development , Moraxellaceae/metabolism , Phenotype , Phylogeny , RNA, Bacterial/genetics , RNA, Bacterial/metabolism , Rhodospirillaceae/genetics , Rhodospirillaceae/growth & development , Rhodospirillaceae/metabolism , Sequence Alignment , Species Specificity , Trypsin/metabolism , beta-Glucosidase/metabolism
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