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1.
Molecules ; 26(5)2021 Feb 26.
Article in English | MEDLINE | ID: mdl-33652889

ABSTRACT

Genetic code expansion (GCE) technology is a useful tool for the site-specific modification of proteins. An unnatural amino acid (UAA) is one of the essential components of this technique, typically required at high concentration (1 mM or higher) in growth medium. The supply of UAAs is an important limitation to the application of GCE technology, as many UAAs are either expansive or commercially unavailable. In this study, two UAAs in a racemic mixture were converted into optically pure forms using two enzymes, the d-amino acid oxidase (RgDAAO) from Rhodotorula gracilis and the aminotransferase (TtAT) from Thermus thermophilus. In the coupled enzyme system, RgDAAO oxidizes the d-form of UAAs in a stereospecific manner and produces the corresponding α-keto acids, which are then converted into the l-form of UAAs by TtAT, resulting in the quantitative and stereospecific conversion of racemic UAAs to optically pure forms. The genetic incorporation of the optically pure UAAs into a target protein produced a better protein yield than the same experiments using the racemic mixtures of the UAAs. This method could not only be used for the preparation of optically pure UAAs from racemic mixtures, but also the broad substrate specificity of both enzymes would allow for its expansion to structurally diverse UAAs.


Subject(s)
Amino Acids/genetics , Protein Engineering , Proteins/genetics , Rhodotorula/genetics , Amino Acids/chemistry , Cloning, Molecular , Culture Media/chemistry , Escherichia coli/genetics , Genetic Code , Proteins/chemistry , Rhodotorula/chemistry , Substrate Specificity
2.
Biotechnol Lett ; 42(5): 757-772, 2020 May.
Article in English | MEDLINE | ID: mdl-31997042

ABSTRACT

OBJECTIVE: Oleaginous yeasts are a renewable and alternative source of oil for third-generation biodiesel. This work aimed to evaluate the effects of glucose concentration (30-100 g L-1) on growth, lipid synthesis, and fatty acids (FA) profile of three Rhodotorula spp. (R. glacialis R15, R. glutinis R4, and R. glutinis R48) isolated from Antarctica, and estimate the key quality parameters of the biodiesel produced by yeasts to confirm their potential as feedstocks for third-generation biodiesel synthesis. RESULTS: Yeasts accumulated 50-69.5% of lipids (w/w) under nitrogen-limitation and glucose-excess (C/N = 40-133). Glucose concentration increase influenced positively lipid accumulation (69.5% w/w) and FA profile of R. glacialis R15. Lipid accumulation (53% on average) of R. glutinis strains was not significantly affected by glucose concentration; content of saturated (~ 30%) and polyunsaturated FA (~ 29-30%) was slightly influenced. FA profiles of lipids synthesized by R15, R4, and R48 are similar to vegetable oils used in biodiesel industry with C16 and C18 FA (95-99%) as the major components, and contain mainly oleic (C18:1), palmitic (C16:0), and linoleic (C18:2) acids, which are suitable for biodiesel synthesis. Estimated fuel properties for biodiesel produced by R15, R4, and R48 satisfied all the criteria established by ASTM D6751 and EN 14214 with good cetane number, iodine value, and oxidation stability. An improvement in biodiesel quality of R15 was observed with the glucose increase. The best global properties of biodiesel from R4 were obtained with 30 g L-1 of glucose. CONCLUSIONS: Rhodotorula spp. from Antarctica are promising candidates for third-generation biodiesel synthesis.


Subject(s)
Biofuels/analysis , Fatty Acids/analysis , Rhodotorula/growth & development , Antarctic Regions , Biomass , Culture Media/chemistry , Glucose/metabolism , Rhodotorula/chemistry , Rhodotorula/metabolism
3.
Extremophiles ; 23(4): 461-466, 2019 Jul.
Article in English | MEDLINE | ID: mdl-31089891

ABSTRACT

To investigate the potential of matrix-assisted laser desorption ionization mass spectrometry (MALDI-TOF/MS) as a platform to support biodiversity and phylogenetic studies of psychrophilic yeasts in cold environments, the technique was employed to rapidly characterize and distinguish three psychrophilic yeasts (Rhodotorula mucilaginosa, Naganishia vishniacii, and Dioszegia cryoxerica) from three mesophilic counterparts (Saccharomyces cerevisiae Cry Havoc, S. cerevisiae California V Ale, and S. pastorianus). A detailed workflow for providing reproducible mass spectral fingerprints of low molecular weight protein/peptide features specific to the organisms studied is presented. The potential of this approach as a tool in the study of biodiversity, systematics, and phylogeny of psychrophilic microorganisms is highlighted.


Subject(s)
Fungal Proteins/chemistry , Microbiota , Proteomics/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Antarctic Regions , Rhodotorula/chemistry , Rhodotorula/metabolism , Saccharomyces/chemistry , Saccharomyces/metabolism
4.
Fish Shellfish Immunol ; 90: 30-39, 2019 Jul.
Article in English | MEDLINE | ID: mdl-31004799

ABSTRACT

An 8 weeks feeding experiment was conducted to evaluate the effects of dietary supplementation with hydrolyzed yeast (HY) (Rhodotorula mucilaginosa) on growth performance, hematological parameters, immune response and antioxidant ability of juvenile Nile tilapia. Five isonitrogenous and isolipidic diets (32% protein and 4% lipid) with different levels (0%, 0.125%, 0.25%, 0.5%, 1%) of HY were formulated. Each diet was randomly assigned to quadruplicate groups of fish (initial body weight 19.1 ±â€¯0.01 g). Results indicated that significantly higher specific growth rate (SGR) and lower feed conversion rate (FCR) were obtained in fish fed 1% HY diet than that of fish fed 0% HY diet (P < 0.05). Fish fed 0.25% HY diet showed the lowest value of hepatopancreas somatic indices (HSI) and significantly lower than that of fish fed 0% HY diet (P < 0.05). Meanwhile, protein and ash in the whole-body content of fish fed 1% HY diet was significantly higher than that of fish fed 0%-0.5% HY diets. Serum immunological parameters showed that the lysozyme (LZM) activity and Complement C3 content were significantly increased by dietary supplementation of 0.5%-1% HY (P < 0.05). However, dietary supplementation with 0.125%-1% HY significantly decreased the activity of myeloperoxidase (MPO) (P < 0.05). Antioxidant status in serum and liver was significantly enhanced by dietary supplementation of 0.25%-1% HY through the remarkably improved superoxide dismutase (SOD) activity both in serum and liver, the raised total antioxidative capacity (T-AOC) of serum as well as the notably reduced malondialdehyde (MDA) content in the liver (P < 0.05). However, T-AOC in the liver was not significantly influenced among all diet treatments (P > 0.05). Villi height and intraepithelial lymphocytes (IEFs) of mid-intestine were significantly higher in fish fed 0.5%-1% HY diets (P < 0.05). The challenge test demonstrated the enhanced protection against Streptococcus iniae strain by the obtained higher cumulative survival rate. In conclusion, dietary supplementation of 1% HY could maintain the better growth performance, nutrient composition as well as immune response and antioxidant capacity for juvenile Nile tilapia.


Subject(s)
Cichlids/immunology , Disease Resistance/immunology , Fish Diseases/immunology , Rhodotorula/chemistry , Streptococcal Infections/veterinary , Animal Feed/analysis , Animals , Antioxidants/metabolism , Cichlids/growth & development , Cichlids/physiology , Diet/veterinary , Dietary Supplements/analysis , Dose-Response Relationship, Drug , Random Allocation , Streptococcal Infections/immunology , Streptococcus iniae/physiology
5.
Molecules ; 24(21)2019 Oct 31.
Article in English | MEDLINE | ID: mdl-31683743

ABSTRACT

Onychomycosis is a major health problem due to its chronicity and resistance to therapy. Because some cases associate paronychia, any therapy must target the fungus and the inflammation. Medicinal plants represent an alternative for onychomycosis control. In the present work the antifungal and antioxidant activities of Alium sativum extract against Meyerozyma guilliermondii (Wick.) Kurtzman & M. Suzuki and Rhodotorula mucilaginosa (A. Jörg.) F.C. Harrison, isolated for the first time from a toenail onychomycosis case, were investigated. The fungal species were confirmed by DNA molecular analysis. A. sativum minimum inhibitory concentration (MIC) and ultrastructural effects were examined. At the MIC concentration (120 mg/mL) the micrographs indicated severe structural alterations with cell death. The antioxidant properties of the A. sativum extract were evaluated is a rat turpentine oil induced inflammation, and compared to an anti-inflammatory drug, diclofenac, and the main compound from the extract, allicin. A. sativum reduced serum total oxidative status, malondialdehyde and nitric oxide production, and increased total thiols. The effects were comparable to those of allicin and diclofenac. In conclusion, the garlic extract had antifungal effects against M. guilliermondii and R. mucilaginosa, and antioxidant effect in turpentine-induced inflammation. Together, the antifungal and antioxidant activities support that A. sativum is a potential alternative treatment in onychomycosis.


Subject(s)
Antifungal Agents/therapeutic use , Antioxidants/therapeutic use , Garlic/chemistry , Onychomycosis/drug therapy , Onychomycosis/microbiology , Plant Extracts/therapeutic use , Rhodotorula/chemistry , Saccharomycetales/chemistry , Animals , Antifungal Agents/pharmacology , Antioxidants/pharmacology , Benzothiazoles/chemistry , Biphenyl Compounds/chemistry , Colony Count, Microbial , Free Radical Scavengers/chemistry , Humans , Male , Nails/drug effects , Nails/microbiology , Nails/pathology , Phytochemicals/analysis , Phytochemicals/pharmacology , Picrates/chemistry , Plant Extracts/pharmacology , Rats, Wistar , Rhodotorula/drug effects , Rhodotorula/growth & development , Rhodotorula/ultrastructure , Saccharomycetales/drug effects , Saccharomycetales/growth & development , Saccharomycetales/ultrastructure , Sulfonic Acids/chemistry
6.
Chem Biodivers ; 15(6): e1800069, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29655310

ABSTRACT

Three strains of red yeast Rhodosporidium kratochvilovae, Rhodotorula glutinis and Sporidiobolus salmonicolor were studied for their responses to the presence metal stress, oxidative stress and a combination of these stress factors. For all yeast strains, the production of ß-carotene increased in stress conditions. The combination of H2 O2 and Zn2+ significantly activated the pathways for the production of torularhodin in the strain R. glutinis (from 250 to 470 µg g-1 DCW) as well as ß-carotene (from 360 to 1100 µg g-1 DCW) and torulene (from 100 to 360 µg g-1 DCW) in Sp. salmonicolor. Strains of R. glutinis and Rh. kratochvilovae bound the majority of Zn(II) ions to the fibrillar part of the cell walls, whereas the strain Sp. salmonicolor bound them to both extracellular polymers and the fibrillar part of the cell walls. A decrease in the ability of yeasts to tolerate higher concentrations of Zn(II) in the presence of free radicals (hydrogen peroxide) was also found.


Subject(s)
Basidiomycota/chemistry , Carotenoids/biosynthesis , Reactive Oxygen Species/metabolism , Rhodospirillum/chemistry , Rhodotorula/chemistry , Zinc/metabolism , Basidiomycota/metabolism , Carotenoids/chemistry , Ions/chemistry , Ions/metabolism , Rhodospirillum/metabolism , Rhodotorula/metabolism , Zinc/chemistry
7.
Prep Biochem Biotechnol ; 48(3): 296-302, 2018 Mar 16.
Article in English | MEDLINE | ID: mdl-29424627

ABSTRACT

Production of lipid from oleaginous yeast using starch as a carbon source is not a common practice; therefore, the purpose of this investigation was to explore the capability of starch assimilating microbes to produce oil, which was determined in terms of biomass weight, productivity, and lipid yield. Saccharomyces pastorianus, Rhodotorula mucilaginosa, Rhodotorula glutinis, and fungal isolate Ganoderma wiiroense were screened for the key parameters. The optimization was also performed by one-factor-at-a-time approach. Considering the specific yield of lipid and cell dry weight yield, R. glutinis and R. mucilaginosa showed superiority over other strains. G. wiiroense, a new isolate, would also be a promising strain for starch waste utilization in terms of extracellular and intracellular specific yield of lipids. Extracellular specific yield of lipid was highest in R. glutinis culture (0.025 g g-1 of biomass) followed by R. mucilaginosa (0.022 g g-1 of biomass) and G. wiiroense (0.020 g g-1 of biomass). Intracellular lipid was again highest in R. glutinis (0.048 g g-1 of biomass). The most prominent fatty acid methyl esters among the lipid as detected by GC-MS were saturated lipids mainly octadecanoic acid, tetradecanoate, and hexadecanoate. Extracellular lipid produced on starch substrate waste would be a cost-effective alternative for energy-intensive extraction process in biodiesel industry.


Subject(s)
Biofuels/microbiology , Bioprospecting/methods , Ganoderma/chemistry , Industrial Microbiology/methods , Lipids/analysis , Rhodotorula/chemistry , Saccharomyces/chemistry , Biofuels/analysis , Fatty Acids/analysis , Ganoderma/metabolism , Lipid Metabolism , Rhodotorula/metabolism , Saccharomyces/metabolism , Solid Waste/analysis , Starch/chemistry , Starch/metabolism
8.
Microb Cell Fact ; 16(1): 95, 2017 May 30.
Article in English | MEDLINE | ID: mdl-28558761

ABSTRACT

BACKGROUND: Sophorolipids are one of the most promising glycolipid biosurfactants and have been successfully employed in bioremediation and various other industrial sectors. They have also been described to exhibit antimicrobial activity against different bacterial species. Nevertheless, previous literature pertaining to the antifungal activity of sophorolipids are limited indicating the need for further research to explore novel strains with wide antimicrobial activity. A novel yeast strain, Rhodotorula babjevae YS3, was recently isolated from an agricultural field in Assam, Northeast India. This study was primarily emphasized at the characterization and subsequent evaluation of antifungal activity of the sophorolipid biosurfactant produced by R. babjevae YS3. RESULTS: The growth kinetics and biosurfactant production by R. babjevae YS3 was evaluated by cultivation in Bushnell-Haas medium containing glucose (10% w/v) as the sole carbon source. A reduction in the surface tension of the culture medium from 70 to 32.6 mN/m was observed after 24 h. The yield of crude biosurfactant was recorded to be 19.0 g/l which might further increase after optimization of the growth parameters. The biosurfactant was characterized to be a heterogeneous sophorolipid (SL) with both lactonic and acidic forms after TLC, FTIR and LC-MS analyses. The SL exhibited excellent oil spreading and emulsifying activity against crude oil at 38.46 mm2 and 100% respectively. The CMC was observed to be 130 mg/l. The stability of the SL was evaluated over a wide range of pH (2-10), salinity (2-10% NaCl) and temperature (at 120 °C for time intervals of 30 up to 120 min). The SL was found to retain surface-active properties under the extreme conditions. Additionally, the SL exhibited promising antifungal activity against a considerably broad group of pathogenic fungi viz. Colletotrichum gloeosporioides, Fusarium verticilliodes, Fusarium oxysporum f. sp. pisi, Corynespora cassiicola, and Trichophyton rubrum. CONCLUSIONS: The study reports, for the first time, the biosurfactant producing ability of R. babjevae, a relatively lesser studied yeast. The persistent surface active properties of the sophorolipid in extreme conditions advocates its applicability in diverse environmental and industrial sectors. Further, antifungal activities against plant and human pathogens opens up possibilities for development of efficient and eco-friendly antifungal agents with agricultural and biomedical applications.


Subject(s)
Antifungal Agents/pharmacology , Rhodotorula/chemistry , Surface-Active Agents/pharmacology , Antifungal Agents/chemistry , Antifungal Agents/metabolism , Ascomycota/drug effects , Biomass , Colletotrichum/drug effects , Fusarium/drug effects , Microbial Sensitivity Tests , Phylogeny , Rhodotorula/genetics , Rhodotorula/metabolism , Surface-Active Agents/chemistry , Surface-Active Agents/metabolism , Trichophyton/drug effects
9.
Appl Microbiol Biotechnol ; 101(9): 3801-3809, 2017 May.
Article in English | MEDLINE | ID: mdl-28168317

ABSTRACT

Lipid production by the red yeast Rhodosporidium toruloides was explored under nutrient limitation. To determine the compositional profiles of R. toruloides cells, samples were prepared using a continuous cultivation process under nutrient limitation and analyzed via several methods, including Fourier transform infrared spectroscopy and elemental analysis. Under nitrogen limitation, as the dilution rate increased, the cellular lipid content decreased but the carbohydrate and protein contents increased. Under carbon limitation, the cellular lipid, protein, and carbohydrate contents remained relatively constant at the different dilution rates. Moreover, the cellular elemental composition was essentially identical under nitrogen and carbon limitation at a high dilution rate of 0.20 h-1. We also analyzed the consumed carbon to nitrogen (C/N) under different nutrition conditions. The results indicated that the consumed C/N had a major influence on cell metabolism and product formation, which contributed to our understanding of the physiological characteristics of R. toruloides.


Subject(s)
Culture Media , Lipids/analysis , Rhodotorula/chemistry , Rhodotorula/growth & development , Carbohydrates/analysis , Carbon/analysis , Elements , Nitrogen/analysis , Proteins/analysis , Rhodotorula/metabolism , Spectroscopy, Fourier Transform Infrared
10.
J Basic Microbiol ; 57(4): 345-352, 2017 Apr.
Article in English | MEDLINE | ID: mdl-28155998

ABSTRACT

This study analyzes the single cell oil (SCO), fatty acid profile, and biodiesel fuel properties of the yeast Rhodotorula mucilaginosa IIPL32 grown on the pentose fraction of acid pre-treated sugarcane bagasse as a carbon source. The yeast biomass from nitrogen limiting culture conditions (15.3 g L-1 ) was able to give the SCO yield of 0.17 g g-1 of xylose consumed. Acid digestion, cryo-pulverization, direct in situ transesterification, and microwave assisted techniques were evaluated in comparison to the Soxhlet extraction for the total intracellular yeast lipid recovery. The significant differences were observed among the SCO yield of different methods and the in situ transesterification stood out most for effective yeast lipid recovery generating 97.23 mg lipid as FAME per gram dry biomass. The method was fast and consumed lesser solvent with greater FAME yield while accessing most cellular fatty acids present. The yeast lipids showed the major presence of monounsaturated fatty esters (35-55%; 18:1, 16:1) suitable for better ignition quality, oxidative stability, and cold-flow properties of the biodiesel. Analyzed fuel properties (density, kinematic viscosity, cetane number) of the yeast oil were in good agreement with international biodiesel standards. The sugarcane bagasse-derived xylose and the consolidated comparative assessment of lab scale SCO recovery methods highlight the necessity for careful substrate choice and validation of analytical method in yeast oil research. The use of less toxic co-solvents together with solvent recovery and recycling would help improve process economics for sustainable production of biodiesel from the hemicellulosic fraction of cheap renewable sources.


Subject(s)
Biofuels/analysis , Lipids/analysis , Lipids/chemistry , Rhodotorula/chemistry , Rhodotorula/metabolism , Biofuels/economics , Biomass , Cellulose/metabolism , Esterification , Fatty Acids/analysis , Lipids/isolation & purification , Solvents/chemistry , Xylose/metabolism
11.
Article in English | MEDLINE | ID: mdl-28763240

ABSTRACT

This investigation was undertaken to describe a natural process for the removal of silver and the simultaneous recovery of Ag/Ag2O nanoparticles by dead biomass of the yeast Rhodotorula mucilaginosa. The removal of silver ions from aqueous solution and the synthesis of Ag/Ag2O nanoparticles were analyzed based on physicochemical factors and equilibrium concentration, combined with transmission electron microscopy (TEM), scanning electron microscopy (SEM), energy dispersive X-ray spectroscopy (EDS), X-ray photoelectron spectroscopy (XPS), and infrared spectroscopy (FTIR). A successful process for the synthesis of Ag/Ag2O nanoparticles was obtained, following the Langmuir isotherm model, showing a high biosorption capacity of silver (49.0 mg g-1). The nanoparticles were spherical, had an average size of 11.0 nm, were synthesized intracellularly and capped by yeast proteins. This sustainable protocol is an attractive platform for the industrial-scale production of silver nanoparticles and of a silver nanobiosorbent.


Subject(s)
Biomass , Metal Nanoparticles/chemistry , Oxides/chemistry , Rhodotorula/chemistry , Silver Compounds/chemistry , Silver/chemistry , Adsorption , Biodegradation, Environmental , Models, Theoretical , Nanotechnology , Rhodotorula/growth & development , Rhodotorula/ultrastructure , Surface Properties
12.
J Nat Prod ; 79(10): 2580-2589, 2016 10 28.
Article in English | MEDLINE | ID: mdl-27669091

ABSTRACT

A multiplatform mass spectrometry-based approach was used for elucidating extracellular lipids with biosurfactant properties produced by the oleaginous yeast Rhodotorula babjevae UCDFST 04-877. This strain secreted 8.6 ± 0.1 g/L extracellular lipids when grown in a benchtop bioreactor fed with 100 g/L glucose in medium without addition of hydrophobic substrate, such as oleic acid. Untargeted reversed-phase liquid chromatography-quadrupole/time-of-flight mass spectrometry (QTOFMS) detected native glycolipid molecules with masses of 574-716 Da. After hydrolysis into the fatty acid and sugar components and hydrophilic interaction chromatography-QTOFMS analysis, the extracellular lipids were found to consist of hydroxy fatty acids and sugar alcohols. Derivatization and chiral separation gas chromatography-mass spectrometry (GC-MS) identified these components as d-arabitol, d-mannitol, (R)-3-hydroxymyristate, (R)-3-hydroxypalmitate, and (R)-3-hydroxystearate. In order to assemble these substructures back into intact glycolipids that were detected in the initial screen, potential structures were in-silico acetylated to match the observed molar masses and subsequently characterized by matching predicted and observed MS/MS fragmentation using the Mass Frontier software program. Eleven species of acetylated sugar alcohol esters of hydroxy fatty acids were characterized for this yeast strain.


Subject(s)
Glycolipids/chemistry , Glycolipids/isolation & purification , Lipids/chemistry , Rhodotorula/chemistry , Tandem Mass Spectrometry/methods , Gas Chromatography-Mass Spectrometry , Molecular Structure , Sugar Alcohols/chemistry
13.
Appl Microbiol Biotechnol ; 100(14): 6103-6117, 2016 Jul.
Article in English | MEDLINE | ID: mdl-27209039

ABSTRACT

Rhodotorula glutinis is capable of synthesizing numerous valuable compounds with a wide industrial usage. Biomass of this yeast constitutes sources of microbiological oils, and the whole pool of fatty acids is dominated by oleic, linoleic, and palmitic acid. Due to its composition, the lipids may be useful as a source for the production of the so-called third-generation biodiesel. These yeasts are also capable of synthesizing carotenoids such as ß-carotene, torulene, and torularhodin. Due to their health-promoting characteristics, carotenoids are commonly used in the cosmetic, pharmaceutical, and food industries. They are also used as additives in fodders for livestock, fish, and crustaceans. A significant characteristic of R. glutinis is its capability to produce numerous enzymes, in particular, phenylalanine ammonia lyase (PAL). This enzyme is used in the food industry in the production of L-phenylalanine that constitutes the substrate for the synthesis of aspartame-a sweetener commonly used in the food industry.


Subject(s)
Carotenoids/biosynthesis , Enzymes/chemistry , Fatty Acids/biosynthesis , Industrial Microbiology , Rhodotorula/chemistry , Biofuels/microbiology , Biomass , Linoleic Acid/biosynthesis , Oleic Acid/biosynthesis , Palmitic Acid/metabolism , Phenylalanine/metabolism , Phenylalanine Ammonia-Lyase/biosynthesis , Rhodotorula/enzymology , beta Carotene/biosynthesis
14.
Analyst ; 140(6): 1809-13, 2015 Mar 21.
Article in English | MEDLINE | ID: mdl-25654139

ABSTRACT

Raman microimaging of live Rhodotorula mucilaginosa cells, cultured under aerobic and anaerobic conditions, showed striking differences in the composition and distribution of cell components. The analysis of these differences and recovery of oxidative phosphorylation upon environmental changes enabled the interrelation of carotenoids, hemoproteins and the unknown species considered as the "Raman signature of life".


Subject(s)
Carotenoids/analysis , Fungal Proteins/analysis , Hemeproteins/analysis , Rhodotorula/chemistry , Rhodotorula/cytology , Spectrum Analysis, Raman , Oxidative Phosphorylation
15.
Fish Shellfish Immunol ; 43(2): 330-6, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25592878

ABSTRACT

The effects of dietary addition of yeast Rhodotorula benthica (R. benthica) D30 which isolated from local sea mud at levels of 0 (control), 10(5), 10(6) and 10(7) CFU/g feed on the growth performance, digestive enzyme activity, immunity and disease resistance of juvenile sea cucumber Apostichopus japonicus were investigated. It was shown that dietary addition of R. benthica D30 significantly increased the growth rates of sea cucumbers (p < 0.05). The amylase activity, cellulase activity and alginase activity were increased for the animals from three probiotics treated groups. And with the supplemented concentration increased, the values of those digestive enzyme activities increased as well. Dietary addition of R. benthica D30 at the level of 10(7) CFU significantly increased the lysozyme, phagocytic and total nitric oxide synthase activity of A. japonicus (p < 0.05). While, the highest values of the phenoloxidase and alkaline phosphatase activity were found in sea cucumbers fed with R. benthica D30 at the level of 10(6) CFU. Whereas adding R. benthica D30 to diet had no significant effects on the total coelomocyte counts and acid phosphatase activity of A. japonicus (p > 0.05). It was observed that adding R. benthica D30 could significantly decrease the cumulative mortality of sea cucumbers. The present study demonstrated that dietary addition of R. benthica D30 could increase growth performance and some digestive enzyme activities, improve immunity and disease resistance of A. japonicus. And the medium (10(6) CFU) and high (10(7) CFU) additional levels showed better effects. It suggests that yeast R. benthica D30 could be a good probiotic for aquaculture.


Subject(s)
Aquaculture , Probiotics/pharmacology , Rhodotorula/chemistry , Stichopus/drug effects , Animal Feed/analysis , Animal Nutritional Physiological Phenomena/drug effects , Animals , Diet , Digestion/drug effects , Immunity, Innate/drug effects , Probiotics/administration & dosage , Stichopus/enzymology , Stichopus/growth & development , Stichopus/immunology
16.
Water Sci Technol ; 72(5): 810-6, 2015.
Article in English | MEDLINE | ID: mdl-26287841

ABSTRACT

With the rapid industrial development, wastewater has been a risk for environmental contamination. We aimed to explore the optimum condition and mechanism of Pb2+ bio-sorption onto Rhodotorula mucilaginosa WT6-5. Optimization of initial concentration of Pb2+, initial pH, and adsorption time for Pb2+ bio-sorption onto R. mucilaginosa WT6-5 was performed using response surface methodology. Field emission scanning electron microscopy, energy dispersive X-ray detection, X-ray fluorescence and Fourier transform infrared spectroscopy were used to analyze the mechanisms and characteristics of Pb2+ bio-sorption. A maximum Pb2+ bio-sorption capacity of 1.45 mg/g was obtained under the optimal conditions of initial concentration of Pb2+ (30 mg/L), initial pH (5.45) and adsorption time (25 minutes). Some Pb2+ remained after adsorption, and the -OH, -C=O and C-O functional groups were primarily involved in Pb2+ bio-sorption onto R. mucilaginosa WT6-5. The mechanism of Pb2+ bio-sorption involved chemical and biological actions, ion exchange and functional groups effects.


Subject(s)
Lead/isolation & purification , Rhodotorula/chemistry , Water Pollutants, Chemical/isolation & purification , Adsorption , Hydrogen-Ion Concentration , Ion Exchange , Microscopy, Electron, Scanning , Spectroscopy, Fourier Transform Infrared , Statistics as Topic , Wastewater
17.
Biochim Biophys Acta Bioenerg ; 1865(2): 149035, 2024 04 01.
Article in English | MEDLINE | ID: mdl-38360260

ABSTRACT

Rhodotorula mucilaginosa survives extreme conditions through several mechanisms, among them its carotenoid production and its branched mitochondrial respiratory chain (RC). Here, the branched RC composition was analyzed by biochemical and complexome profiling approaches. Expression of the different RC components varied depending on the growth phase and the carbon source present in the medium. R. mucilaginosa RC is constituted by all four orthodox respiratory complexes (CI to CIV) plus several alternative oxidoreductases, in particular two type-II NADH dehydrogenases (NDH2) and one alternative oxidase (AOX). Unlike others, in this yeast the activities of the orthodox and alternative respiratory complexes decreased in the stationary phase. We propose that the branched RC adaptability is an important factor for survival in extreme environmental conditions; thus, contributing to the exceptional resilience of R. mucilaginosa.


Subject(s)
Extremophiles , Rhodotorula , Electron Transport , Rhodotorula/chemistry , Rhodotorula/metabolism , Mitochondrial Membranes/metabolism
18.
J Hazard Mater ; 469: 134082, 2024 May 05.
Article in English | MEDLINE | ID: mdl-38522209

ABSTRACT

Antimony (Sb) pollution seriously endangers ecological environment and human health. Microbial induced mineralization can effectively convert metal ions into more stable and less soluble crystalline minerals by extracellular polymeric substance (EPS). In this study, an efficient Sb-resistant Rhodotorula mucilaginosa (R. mucilaginosa) was screened, which can resist 41 mM Sb(III) and directly transform Sb(III) into Sb2O3 microcrystals by EPS. The removal efficiency of R. mucilaginosa for 22 mM Sb(III) reached 70% by converting Sb(III) to Sb2O3. The components of supernatants as well as the effects of supernatants and pH on Sb(III) mineralization verified that inducible and non-inducible extracellular protein/polysaccharide biomacromolecules play important roles in the morphologies and sizes control of Sb2O3 formed by R. mucilaginosa respectively. Sb2O3 microcrystals with different morphologies and sizes can be prepared by the regulation of inducible and non-inducible extracellular biomacromolecules secreted by R. mucilaginosa. This is the first time to identify that R. mucilaginosa can remove Sb(III) by transforming Sb(III) into Sb2O3 microcrystals under the control of EPS. This study contributes to our understanding for Sb(III) biomineralization mechanisms and provides strategies for the remediation of Sb-contaminated environment.


Subject(s)
Extracellular Polymeric Substance Matrix , Rhodotorula , Humans , Metals/pharmacology , Antimony/chemistry , Rhodotorula/chemistry
19.
J Phys Chem B ; 128(38): 9102-9110, 2024 Sep 26.
Article in English | MEDLINE | ID: mdl-39267442

ABSTRACT

Phenylalanine ammonia-lyase (PAL) plays a central role in the phenylpropanoid pathway and in the treatment of phenylketonuria. However, the integration of PAL into sustainable industrial biocatalysis is hampered by its instability under harsh conditions. This study demonstrates that ionic liquid (IL)-assisted solvent (Tris-HCl buffer) engineering enables improvement of the reaction kinetics and thermodynamic stability of Rhodotorula glutinisPAL (RgPAL) under various stresses. Under optimized conditions, a 66.2% higher Kcat value, >60% remaining activity after 5 weeks of storage at room temperature, and >80% activity of RgPAL after incubation at 60 °C for 1 h were obtained in the [Ch][Ac]-blended Tris-HCl solvent compared to pristine Tris-HCl. The spectroscopic and molecular docking results suggest that the higher extent of hydration and the soft interactions complemented by the ILs with the D-chain residues of RgPAL jointly contributed to achieving more stable and active conformations of RgPAL. The enzyme showed a higher melting temperature (Tm) in ILs+Tris-HCl compared to that in pristine Tris-HCl, with less change in enthalpy (ΔHfu) and entropy (ΔSfu) of unfolding. Overall, IL-mediated solvent engineering alters the microenvironment of RgPAL and allows the development of a robust PAL-based biocatalytic system.


Subject(s)
Enzyme Stability , Ionic Liquids , Phenylalanine Ammonia-Lyase , Solvents , Thermodynamics , Ionic Liquids/chemistry , Ionic Liquids/metabolism , Phenylalanine Ammonia-Lyase/chemistry , Phenylalanine Ammonia-Lyase/metabolism , Kinetics , Solvents/chemistry , Rhodotorula/enzymology , Rhodotorula/chemistry , Molecular Docking Simulation
20.
J Agric Food Chem ; 72(18): 10428-10438, 2024 May 08.
Article in English | MEDLINE | ID: mdl-38660720

ABSTRACT

Tebuconazole is a chiral triazole fungicide used globally in agriculture as a racemic mixture, but its enantiomers exhibit significant enantioselective dissimilarities in bioactivity and environmental behaviors. The steric hindrance caused by the tert-butyl group makes it a great challenge to synthesize tebuconazole enantiomers. Here, we designed a simple chemoenzymatic approach for the asymmetric synthesis of (R)-tebuconazole, which includes the biocatalytic resolution of racemic epoxy-precursor (2-tert-butyl-2-[2-(4-chlorophenyl)ethyl] oxirane, rac-1a) by Escherichia coli/Rpeh whole cells expressed epoxide hydrolase from Rhodotorula paludigensis (RpEH), followed by a one-step chemocatalytic synthesis of (R)-tebuconazole. It was observed that (S)-1a was preferentially hydrolyzed by E. coli/Rpeh, whereas (R)-1a was retained with a specific activity of 103.8 U/g wet cells and a moderate enantiomeric ratio (E value) of 13.4, which was remarkably improved to 43.8 after optimizing the reaction conditions. Additionally, a gram-scale resolution of 200 mM rac-1a was performed using 150 mg/mL E. coli/Rpeh wet cells, resulting in the retention of (R)-1a in a 97.0% ees, a 42.5% yields, and a 40.5 g/L/d space-time yield. Subsequently, the synthesis of highly optical purity (R)-tebuconazole (>99% ee) was easily achieved through the chemocatalytic ring-opening of the epoxy-precursor (R)-1a with 1,2,4-triazole. To elucidate insight into the enantioselectivity, molecular docking simulations revealed that the unique L-shaped substrate-binding pocket of RpEH plays a crucial role in the enantioselective recognition of bulky 2,2-disubstituted oxirane 1a.


Subject(s)
Biocatalysis , Epoxide Hydrolases , Fungal Proteins , Fungicides, Industrial , Rhodotorula , Triazoles , Rhodotorula/enzymology , Rhodotorula/chemistry , Rhodotorula/metabolism , Triazoles/chemistry , Triazoles/metabolism , Fungicides, Industrial/chemistry , Fungicides, Industrial/metabolism , Fungicides, Industrial/chemical synthesis , Epoxide Hydrolases/metabolism , Epoxide Hydrolases/chemistry , Stereoisomerism , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Molecular Docking Simulation , Escherichia coli/enzymology , Escherichia coli/metabolism
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