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1.
PLoS Biol ; 21(1): e3001726, 2023 01.
Article in English | MEDLINE | ID: mdl-36689558

ABSTRACT

Most multicellular organisms harbor microbial colonizers that provide various benefits to their hosts. Although these microbial communities may be host species- or even genotype-specific, the associated bacterial communities can respond plastically to environmental changes. In this study, we estimated the relative contribution of environment and host genotype to bacterial community composition in Nematostella vectensis, an estuarine cnidarian. We sampled N. vectensis polyps from 5 different populations along a north-south gradient on the Atlantic coast of the United States and Canada. In addition, we sampled 3 populations at 3 different times of the year. While half of the polyps were immediately analyzed for their bacterial composition by 16S rRNA gene sequencing, the remaining polyps were cultured under laboratory conditions for 1 month. Bacterial community comparison analyses revealed that laboratory maintenance reduced bacterial diversity by 4-fold, but maintained a population-specific bacterial colonization. Interestingly, the differences between bacterial communities correlated strongly with seasonal variations, especially with ambient water temperature. To decipher the contribution of both ambient temperature and host genotype to bacterial colonization, we generated 12 clonal lines from 6 different populations in order to maintain each genotype at 3 different temperatures for 3 months. The bacterial community composition of the same N. vectensis clone differed greatly between the 3 different temperatures, highlighting the contribution of ambient temperature to bacterial community composition. To a lesser extent, bacterial community composition varied between different genotypes under identical conditions, indicating the influence of host genotype. In addition, we identified a significant genotype x environment interaction determining microbiota plasticity in N. vectensis. From our results we can conclude that N. vectensis-associated bacterial communities respond plastically to changes in ambient temperature, with the association of different bacterial taxa depending in part on the host genotype. Future research will reveal how this genotype-specific microbiota plasticity affects the ability to cope with changing environmental conditions.


Subject(s)
Microbiota , Sea Anemones , Animals , Sea Anemones/genetics , Sea Anemones/microbiology , Gene-Environment Interaction , RNA, Ribosomal, 16S/genetics , Bacteria/genetics , Genotype , Microbiota/genetics
2.
Appl Environ Microbiol ; 89(6): e0018723, 2023 06 28.
Article in English | MEDLINE | ID: mdl-37191521

ABSTRACT

Understanding disease transmission in corals can be complicated given the intricacy of the holobiont and difficulties associated with ex situ coral cultivation. As a result, most of the established transmission pathways for coral disease are associated with perturbance (i.e., damage) rather than evasion of immune defenses. Here, we investigate ingestion as a potential pathway for the transmission of coral pathogens that evades the mucus membrane. Using sea anemones (Exaiptasia pallida) and brine shrimp (Artemia sp.) to model coral feeding, we tracked the acquisition of the putative pathogens, Vibrio alginolyticus, V. harveyi, and V. mediterranei using GFP-tagged strains. Vibrio sp. were provided to anemones using 3 experimental exposures (i) direct water exposure alone, (ii) water exposure in the presence of a food source (non-spiked Artemia), and (iii) through a "spiked" food source (Vibrio-colonized Artemia) created by exposing Artemia cultures to GFP-Vibrio via the ambient water overnight. Following a 3 h feeding/exposure duration, the level of acquired GFP-Vibrio was quantified from anemone tissue homogenate. Ingestion of spiked Artemia resulted in a significantly greater burden of GFP-Vibrio equating to an 830-fold, 3,108-fold, and 435-fold increase in CFU mL-1 when compared to water exposed trials and a 207-fold, 62-fold, and 27-fold increase in CFU mL-1 compared to water exposed with food trials for V. alginolyticus, V. harveyi, and V. mediterranei, respectively. These data suggest that ingestion can facilitate delivery of an elevated dose of pathogenic bacteria in cnidarians and may describe an important portal of entry for pathogens in the absence of perturbing conditions. IMPORTANCE The front line of pathogen defense in corals is the mucus membrane. This membrane coats the surface body wall creating a semi-impermeable layer that inhibits pathogen entry from the ambient water both physically and biologically through mutualistic antagonism from resident mucus microbes. To date, much of the coral disease transmission research has been focused on mechanisms associated with perturbance of this membrane such as direct contact, vector lesions (predation/biting), and waterborne exposure through preexisting lesions. The present research describes a potential transmission pathway that evades the defenses provided by this membrane allowing unencumbered entry of bacteria as in association with food. This pathway may explain an important portal of entry for emergence of idiopathic infections in otherwise healthy corals and can be used to improve management practices for coral conservation.


Subject(s)
Anthozoa , Sea Anemones , Vibrio , Animals , Anthozoa/microbiology , Sea Anemones/microbiology , Heterotrophic Processes , Eating
3.
BMC Microbiol ; 21(1): 152, 2021 05 21.
Article in English | MEDLINE | ID: mdl-34020587

ABSTRACT

BACKGROUND: Coral reefs are among the most diverse and productive ecosystems on Earth. This success relies on the coral's association with a wide range of microorganisms, including dinoflagellates of the family Symbiodiniaceae that provide coral hosts with most of their organic carbon requirements. While bacterial associates have long been overlooked, research on these microorganisms is gaining traction, and deciphering bacterial identity and function is greatly enhancing our understanding of cnidarian biology. Here, we investigated bacterial communities in defensive tissues (acontia) of the coral model, the sea anemone Exaiptasia diaphana. Acontia are internal filaments that are ejected upon detection of an external threat and release toxins to repel predators. RESULTS: Using culturing techniques and 16S rRNA gene metabarcoding we identified bacterial communities associated with acontia of four Great Barrier Reef-sourced E. diaphana genotypes. We show that bacterial communities are similar across genotypes, and dominated by Alteromonadaceae, Vibrionaceae, Rhodobacteraceae, and Saprospiraceae. By analyzing abundant amplicon sequence variants (ASVs) from metabarcoding data from acontia and comparing these to data from whole anemones, we identified five potentially important bacterial genera of the acontia microbiome: Vibrio, Sulfitobacter, Marivita, Alteromonas, and Lewinella. The role of these bacteria within the acontia remains uninvestigated but could entail assistance in defense processes such as toxin production. CONCLUSIONS: This study provides insight into potential bacterial involvement in cnidarian defense tissues and highlights the need to study bacterial communities in individual compartments within a holobiont.


Subject(s)
Bacteria/isolation & purification , Microbiota , Sea Anemones/microbiology , Animal Structures/microbiology , Animals , Bacteria/classification , Bacteria/genetics , Bacterial Physiological Phenomena , Coral Reefs , DNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Sea Anemones/physiology , Symbiosis
4.
Environ Microbiol ; 22(9): 3741-3753, 2020 09.
Article in English | MEDLINE | ID: mdl-32592285

ABSTRACT

Hosting different symbiont species can affect inter-partner nutritional fluxes within the cnidarian-dinoflagellate symbiosis. Using nanoscale secondary ion mass spectrometry (NanoSIMS), we measured the spatial incorporation of photosynthetically fixed 13 C and heterotrophically derived 15 N into host and symbiont cells of the model symbiotic cnidarian Aiptasia (Exaiptasia pallida) when colonized with its native symbiont Breviolum minutum or the non-native Durusdinium trenchii. Breviolum minutum exhibited high photosynthetic carbon assimilation per cell and translocation to host tissue throughout symbiosis establishment, whereas D. trenchii assimilated significantly less carbon, but obtained more host nitrogen. These findings suggest that D. trenchii has less potential to provide photosynthetically fixed carbon to the host despite obtaining considerable amounts of heterotrophically derived nitrogen. These sub-cellular events help explain previous observations that demonstrate differential effects of D. trenchii compared to B. minutum on the host transcriptome, proteome, metabolome and host growth and asexual reproduction. Together, these differential effects suggest that the non-native host-symbiont pairing is sub-optimal with respect to the host's nutritional benefits under normal environmental conditions. This contributes to our understanding of the ways in which metabolic integration impacts the benefits of a symbiotic association, and the potential evolution of novel host-symbiont pairings.


Subject(s)
Dinoflagellida/metabolism , Sea Anemones/metabolism , Animals , Carbon/metabolism , Dinoflagellida/genetics , Metabolome , Nitrogen/metabolism , Photosynthesis , Proteome , Sea Anemones/genetics , Sea Anemones/microbiology , Symbiosis , Transcriptome
5.
J Nat Prod ; 83(8): 2528-2536, 2020 08 28.
Article in English | MEDLINE | ID: mdl-32813522

ABSTRACT

Eight new diterpenoid acids, namely, talascortenes A-G (1-7) and 5α,9ß-dihydroxyisocupressic acid (8), with four different carbon skeletons, were isolated and identified from the endozoic fungal strain Talaromyces scorteus AS-242 that was obtained from the inner fresh tissue of a deep sea Cerianthus sp. sea anemone. The structures of the new compounds were elucidated by detailed interpretation of NMR and mass spectrometric data. X-ray crystallographic analysis of compounds 1-5 and 7 confirmed their structures and absolute configurations. Compounds 1-8 showed inhibitory activities against several human, aquatic, and plant pathogens with MIC values ranging from 1 to 32 µg/mL.


Subject(s)
Diterpenes/isolation & purification , Oxygen/chemistry , Sea Anemones/microbiology , Talaromyces/chemistry , Animals , Crystallography, X-Ray , Diterpenes/chemistry , Diterpenes/pharmacology , Microbial Sensitivity Tests , Molecular Structure , Spectrum Analysis/methods
6.
Proc Natl Acad Sci U S A ; 114(47): E10122-E10131, 2017 11 21.
Article in English | MEDLINE | ID: mdl-29109290

ABSTRACT

In organisms from insects to vertebrates, Toll-like receptors (TLRs) are primary pathogen detectors that activate downstream pathways, specifically those that direct expression of innate immune effector genes. TLRs also have roles in development in many species. The sea anemone Nematostella vectensis is a useful cnidarian model to study the origins of TLR signaling because its genome encodes a single TLR and homologs of many downstream signaling components, including the NF-κB pathway. We have characterized the single N. vectensis TLR (Nv-TLR) and demonstrated that it can activate canonical NF-κB signaling in human cells. Furthermore, we show that the intracellular Toll/IL-1 receptor (TIR) domain of Nv-TLR can interact with the human TLR adapter proteins MAL and MYD88. We demonstrate that the coral pathogen Vibrio coralliilyticus causes a rapidly lethal disease in N. vectensis and that heat-inactivated V. coralliilyticus and bacterial flagellin can activate a reconstituted Nv-TLR-to-NF-κB pathway in human cells. By immunostaining of anemones, we show that Nv-TLR is expressed in a subset of cnidocytes and that many of these Nv-TLR-expressing cells also express Nv-NF-κB. Additionally, the nematosome, which is a Nematostella-specific multicellular structure, expresses Nv-TLR and many innate immune pathway homologs and can engulf V. coralliilyticus Morpholino knockdown indicates that Nv-TLR also has an essential role during early embryonic development. Our characterization of this primitive TLR and identification of a bacterial pathogen for N. vectensis reveal ancient TLR functions and provide a model for studying the molecular basis of cnidarian disease and immunity.


Subject(s)
Gene Expression Regulation, Developmental/immunology , NF-kappa B/immunology , Sea Anemones/immunology , Toll-Like Receptors/immunology , Animals , Cell Line , Chickens , Embryo, Nonmammalian , Fibroblasts/drug effects , Fibroblasts/immunology , Fibroblasts/microbiology , Flagellin/pharmacology , HEK293 Cells , Hot Temperature , Humans , Immunity, Innate , Morpholinos/genetics , Morpholinos/metabolism , Myelin and Lymphocyte-Associated Proteolipid Proteins/genetics , Myelin and Lymphocyte-Associated Proteolipid Proteins/immunology , Myeloid Differentiation Factor 88/genetics , Myeloid Differentiation Factor 88/immunology , NF-kappa B/genetics , Protein Binding , Sea Anemones/genetics , Sea Anemones/growth & development , Sea Anemones/microbiology , Signal Transduction , Toll-Like Receptors/antagonists & inhibitors , Toll-Like Receptors/genetics , Vibrio/pathogenicity , Vibrio/physiology
7.
Mar Drugs ; 17(3)2019 Mar 05.
Article in English | MEDLINE | ID: mdl-30841562

ABSTRACT

The presence of two known anthraquinones, Lupinacidin A and Galvaquinone B, which have antitumor activity, has been identified in the sea anemone (Gyractis sesere) from Easter Island. So far, these anthraquinones have been characterized from terrestrial and marine Actinobacteria only. In order to identify the anthraquinones producer, we isolated Actinobacteria associated with the sea anemone and obtained representatives of seven actinobacterial genera. Studies of cultures of these bacteria by HPLC, NMR, and HRLCMS analyses showed that the producer of Lupinacidin A and Galvaquinone B indeed was one of the isolated Actinobacteria. The producer strain, SN26_14.1, was identified as a representative of the genus Verrucosispora. Genome analysis supported the biosynthetic potential to the production of these compounds by this strain. This study adds Verrucosispora as a new genus to the anthraquinone producers, in addition to well-known species of Streptomyces and Micromonospora. By a cultivation-based approach, the responsibility of symbionts of a marine invertebrate for the production of complex natural products found within the animal's extracts could be demonstrated. This finding re-opens the debate about the producers of secondary metabolites in sea animals. Finally, it provides valuable information about the chemistry of bacteria harbored in the geographically-isolated and almost unstudied, Easter Island.


Subject(s)
Actinobacteria/metabolism , Anthraquinones/isolation & purification , Antibiotics, Antineoplastic/isolation & purification , Sea Anemones/microbiology , Actinobacteria/genetics , Actinobacteria/isolation & purification , Animals , Anthraquinones/metabolism , Antibiotics, Antineoplastic/metabolism , Genome, Bacterial/genetics , Polynesia , Sea Anemones/metabolism , Symbiosis
8.
Mar Drugs ; 17(9)2019 Aug 24.
Article in English | MEDLINE | ID: mdl-31450549

ABSTRACT

The cell density-dependent mechanism, quorum sensing (QS), regulates the expression of virulence factors. Its inhibition has been proposed as a promising new strategy to prevent bacterial pathogenicity. In this study, 827 strains from the microbiota of sea anemones and holothurians were screened for their ability to produce quorum-sensing inhibitor (QSI) compounds. The strain M3-10, identified as Vibrio alginolyticus by 16S rRNA gene sequencing, as well as ANIb and dDDH analyses, was selected for its high QSI activity. Bioassay-guided fractionation of the cell pellet extract from a fermentation broth of strain M3-10, followed by LC-MS and NMR analyses, revealed tyramine and N-acetyltyramine as the active compounds. The QS inhibitory activity of these molecules, which was confirmed using pure commercially available standards, was found to significantly inhibit Chromobacterium violaceum ATCC 12472 violacein production and virulence factors, such as pyoverdine production, as well as swarming and twitching motilities, produced by Pseudomonas aeruginosa PAO1. This constitutes the first study to screen QSI-producing strains in the microbiota of anemones and holothurians and provides an insight into the use of naturally produced QSI as a possible strategy to combat bacterial infections.


Subject(s)
Anti-Bacterial Agents/pharmacology , Quorum Sensing/drug effects , Sea Anemones/microbiology , Tyramine/analogs & derivatives , Vibrio alginolyticus/metabolism , Animals , Anti-Bacterial Agents/isolation & purification , Anti-Bacterial Agents/metabolism , Biofilms/drug effects , Chromobacterium/drug effects , Chromobacterium/physiology , Indoles/antagonists & inhibitors , Indoles/metabolism , Microbiota , Pseudomonas aeruginosa/drug effects , Pseudomonas aeruginosa/physiology , Tyramine/isolation & purification , Tyramine/pharmacology , Vibrio alginolyticus/chemistry , Virulence Factors/antagonists & inhibitors , Virulence Factors/metabolism
9.
Environ Microbiol ; 18(6): 1764-81, 2016 06.
Article in English | MEDLINE | ID: mdl-26032917

ABSTRACT

The establishment of host-bacterial colonization during development is a fundamental process influencing the fitness of many organisms, but the factors controlling community membership and influencing the establishment of the microbial ecosystem during development are poorly understood. The starlet sea anemone Nematostella vectensis serves as a cnidarian model organism due to the availability of laboratory cultures and its high tolerance for broad ranges of salinity and temperature. Here, we show that the anemone's epithelia are colonized by diverse bacterial communities and that the composition of its microbiota is tightly coupled to host development. Environmental variations led to robust adjustments in the microbial composition while still maintaining the ontogenetic core signature. In addition, analysis of bacterial communities of Nematostella polyps from five different populations revealed a strong correlation between host biogeography and bacterial diversity despite years of laboratory culturing. These observed variations in fine-scale community composition following environmental change and for individuals from different geographic origins could represent the microbiome's contribution to host acclimation and potentially adaptation, respectively, and thereby contribute to the maintenance of homeostasis due to environmental changes.


Subject(s)
Bacteria/growth & development , Sea Anemones/microbiology , Animals , Bacteria/genetics , Bacteria/isolation & purification , Microbiota , Sea Anemones/growth & development , Sea Anemones/physiology
10.
J Invertebr Pathol ; 135: 15-21, 2016 Mar.
Article in English | MEDLINE | ID: mdl-26836977

ABSTRACT

The evolution of multicellular organisms was marked by adaptations to protect against pathogens. The mechanisms for discriminating the ''self'' from ''non-self" have evolved into a long history of cellular and molecular strategies, from damage repair to the co-evolution of host-pathogen interactions. We investigated the inflammatory response in Anemonia sulcata (Cnidaria: Anthozoa) following injection of substances that varied in type and dimension, and observed clear, strong and specific reactions, especially after injection of Escherichia coli and Vibrio alginolyticus. Moreover, we analyzed enzymatic activity of protease, phosphatase and esterase, showing how the injection of different bacterial strains alters the expression of these enzymes and suggesting a correlation between the appearance of the inflammatory reaction and the modification of enzymatic activities. Our study shows for the first time, a specific reaction and enzymatic responses following injection of bacteria in a cnidarian.


Subject(s)
Escherichia coli/physiology , Sea Anemones/microbiology , Vibrio alginolyticus/physiology , Alkaline Phosphatase/metabolism , Animals , Densitometry , Electrophoresis, Polyacrylamide Gel , Esterases/metabolism , Fibrinogen/metabolism , Fibrinolysis , Gelatin/metabolism , Host-Pathogen Interactions , Inflammation , Peptide Hydrolases/metabolism , Phosphoric Monoester Hydrolases/metabolism , Sea Anemones/enzymology , Sea Anemones/physiology
11.
Int J Syst Evol Microbiol ; 65(Pt 3): 915-919, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25563909

ABSTRACT

A Gram-stain-negative, facultatively anaerobic, oxidase- and catalase-positive, rod-shaped bacterium, strain SYM1(T), was isolated from a culture of Symbiodinium sp., an algal symbiont of the sea anemone Aiptasia tagetes collected in Puerto Rico. Growth was observed at 4-40 °C (optimum 30 °C), at pH 5.0-11.0 (optimum pH 8.0) and with 0.5-8 % (optimum 2 %) (w/v) NaCl. Phylogenetic analyses of 16S rRNA gene sequences showed that strain SYM1(T) was a member of the genus Neptunomonas with the type strain of Neptunomonas naphthovorans as the closest phylogenetic relative with a pairwise sequence similarity of 98.15 %. However, DNA-DNA relatedness between strain SYM1(T) and N. naphthovorans CIP 106451(T) was 24 %. Moreover, strain SYM1(T) could be distinguished from its closest relative by several phenotypic characteristics such as NaCl, pH and temperature tolerance, nitrate reduction and utilization of carbon substrates. The major cellular fatty acids were C16 : 0, C18 : 1ω7c and summed feature 3 (comprising C16 : 1ω7c and/or iso-C15 : 0 2-OH). The genomic DNA G+C content of strain SYM1(T) was 45 mol%. Ubiquinone-8 (Q-8) was the only respiratory quinone detected. Based on a polyphasic taxonomic characterization, strain SYM1(T) represents a novel species of the genus Neptunomonas, for which the name Neptunomonas phycophila sp. nov. is proposed. The type strain is SYM1(T) ( = LMG 28329(T) = CECT 8716(T)).


Subject(s)
Dinoflagellida/microbiology , Oceanospirillaceae/classification , Phylogeny , Sea Anemones/microbiology , Animals , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Molecular Sequence Data , Nucleic Acid Hybridization , Oceanospirillaceae/genetics , Oceanospirillaceae/isolation & purification , Puerto Rico , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Symbiosis , Ubiquinone/chemistry
12.
Microb Ecol ; 68(2): 388-96, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24619233

ABSTRACT

Incidents of coral disease are on the rise. However, in the absence of a surrogate animal host, understanding of the interactions between coral pathogens and their hosts remains relatively limited, compared to other pathosystems of similar global importance. A tropical sea anemone, Aiptasia pallida, has been investigated as a surrogate model to study certain aspects of coral biology. Therefore, to test whether the utility of this surrogate model can be extended to study coral diseases, in the present study, we tested its susceptibility to common coral pathogens (Vibrio coralliilyticus and Vibrio shiloi) as well as polymicrobial consortia recovered from the Caribbean Yellow Band Disease (CYBD) lesions. A. pallida was susceptible to each of the tested pathogens. A. pallida responded to the pathogens with darkening of the tissues (associated with an increased melanization) and retraction of tentacles, followed by complete disintegration of polyp tissues. Loss of zooxanthellae was not observed; however, the disease progression pattern is consistent with the behavior of necrotizing pathogens. Virulence of some coral pathogens in Aiptasia was paralleled with their glycosidase activities.


Subject(s)
Sea Anemones/microbiology , Vibrio/pathogenicity , Animals , Anthozoa/microbiology , Host-Pathogen Interactions , Melanins/biosynthesis , Microbial Consortia , Sea Anemones/metabolism , Stress, Physiological , Temperature , Virulence
13.
mSystems ; 9(6): e0134223, 2024 Jun 18.
Article in English | MEDLINE | ID: mdl-38757963

ABSTRACT

Microbial species that comprise host-associated microbiomes play an essential role in maintaining and mediating the health of plants and animals. While defining the role of individual or even complex communities is important toward quantifying the effect of the microbiome on host health, it is often challenging to develop causal studies that link microbial populations to changes in host fitness. Here, we investigated the impacts of reduced microbial load following antibiotic exposure on the fitness of the anemone, Exaiptasia diaphana and subsequent recovery of the host's microbiome. Anemones were exposed to two different types of antibiotic solutions for 3 weeks and subsequently held in sterilized seawater for a 3-week recovery period. Our results revealed that both antibiotic treatments reduced the overall microbial load during and up to 1 week post-treatment. The observed reduction in microbial load was coupled with reduced anemone biomass, halted asexual reproduction rates, and for one of the antibiotic treatments, the partial removal of the anemone's algal symbiont. Finally, our amplicon sequencing results of the 16S rRNA gene revealed that anemone bacterial composition only shifted in treated individuals during the recovery phase of the experiment, where we also observed a significant reduction in the overall diversity of the microbial community. Our work implies that the E. diaphana's microbiome contributes to host fitness and that the recovery of the host's microbiome following disturbance with antibiotics leads to a reduced, but stable microbial state.IMPORTANCEExaiptasia diaphana is an emerging model used to define the cellular and molecular mechanisms of coral-algal symbioses. E. diaphana also houses a diverse microbiome, consisting of hundreds of microbial partners with undefined function. Here, we applied antibiotics to quantify the impact of microbiome removal on host fitness as well as define trajectories in microbiome recovery following disturbance. We showed that reduction of the microbiome leads to negative impacts on host fitness, and that the microbiome does not recover to its original composition while held under aseptic conditions. Rather the microbiome becomes less diverse, but more consistent across individuals. Our work is important because it suggests that anemone microbiomes play a role in maintaining host fitness, that they are susceptible to disturbance events, and that it is possible to generate gnotobiotic individuals that can be leveraged in microbiome manipulation studies to investigate the role of individual species on host health.


Subject(s)
Anti-Bacterial Agents , Microbiota , RNA, Ribosomal, 16S , Sea Anemones , Sea Anemones/microbiology , Sea Anemones/drug effects , Animals , Microbiota/drug effects , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/adverse effects , RNA, Ribosomal, 16S/genetics , Symbiosis , Bacteria/drug effects , Bacteria/genetics , Bacteria/classification , Bacteria/isolation & purification
14.
Appl Environ Microbiol ; 79(22): 6868-73, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23995941

ABSTRACT

Analysis of the genome sequence of the starlet sea anemone, Nematostella vectensis, reveals many genes whose products are phylogenetically closer to proteins encoded by bacteria or bacteriophages than to any metazoan homologs. One explanation for such sequence affinities could be that these genes have been horizontally transferred from bacteria to the Nematostella lineage. We show, however, that bacterium-like and phage-like genes sequenced by the N. vectensis genome project tend to cluster on separate scaffolds, which typically do not include eukaryotic genes and differ from the latter in their GC contents. Moreover, most of the bacterium-like genes in N. vectensis either lack introns or the introns annotated in such genes are false predictions that, when translated, often restore the missing portions of their predicted protein products. In a freshwater cnidarian, Hydra, for which a proteobacterial endosymbiont is known, these gene features have been used to delineate the DNA of that endosymbiont sampled by the genome sequencing project. We predict that a large fraction of bacterium-like genes identified in the N. vectensis genome similarly are drawn from the contemporary bacterial consorts of the starlet sea anemone. These uncharacterized bacteria associated with N. vectensis are a proteobacterium and a representative of the phylum Bacteroidetes, each represented in the database by an apparently random sample of informational and operational genes. A substantial portion of a putative bacteriophage genome was also detected, which would be especially unlikely to have been transferred to a eukaryote.


Subject(s)
Bacteria/growth & development , Genes, Bacterial , Sea Anemones/genetics , Sea Anemones/microbiology , Animals , Bacteria/genetics , Computational Biology , Genome , Introns , Phylogeny , Sequence Analysis, DNA , Symbiosis/genetics
15.
Microb Ecol ; 65(2): 269-76, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23011286

ABSTRACT

Ocean acidification, resulting from rising atmospheric carbon dioxide concentrations, is a pervasive stressor that can affect many marine organisms and their symbionts. Studies which examine the host physiology and microbial communities have shown a variety of responses to the ocean acidification process. Recently, several studies were conducted based on field experiments, which take place in natural CO(2) vents, exposing the host to natural environmental conditions of varying pH. This study examines the sea anemone Anemonia viridis which is found naturally along the pH gradient in Ischia, Italy, with an aim to characterize whether exposure to pH impacts the holobiont. The physiological parameters of A. viridis (Symbiodinium density, protein, and chlorophyll a+c concentration) and its microbial community were monitored. Although reduction in pH was seen to have had an impact on composition and diversity of associated microbial communities, no significant changes were observed in A. viridis physiology, and no microbial stress indicators (i.e., pathogens, antibacterial activity, etc.) were detected. In light of these results, it appears that elevated CO(2) does not have a negative influence on A. viridis that live naturally in the site. This suggests that natural long-term exposure and dynamic diverse microbial communities may contribute to the acclimation process of the host in a changing pH environment.


Subject(s)
Bacteria/isolation & purification , Biota , Hydrogen-Ion Concentration , Sea Anemones/microbiology , Animals , Bacteria/genetics , Carbon Dioxide/analysis , Chlorophyll/analysis , DNA, Bacterial/genetics , Dinoflagellida/isolation & purification , Italy , Mediterranean Sea , Proton-Motive Force , Seawater/chemistry
16.
Front Immunol ; 14: 1292410, 2023.
Article in English | MEDLINE | ID: mdl-38077367

ABSTRACT

Climate change is increasing ocean temperatures and consequently impacts marine life (e.g., bacterial communities). In this context, studying host-pathogen interactions in marine organisms is becoming increasingly important, not only for ecological conservation, but also to reduce economic loss due to mass mortalities in cultured species. In this study, we used Exaiptasia pallida (E. pallida), an anemone, as an emerging marine model to better understand the effect of rising temperatures on the infection induced by the pathogenic marine bacterium Vibrio parahaemolyticus. The effect of temperature on E. pallida was examined at 6, 24, or 30 h after bath inoculation with 108 CFU of V. parahaemolyticus expressing GFP (Vp-GFP) at 27°C (husbandry temperature) or 31°C (heat stress). Morphological observations of E. pallida and their Hsps expression demonstrated heat stress induced increasing damage to anemones. The kinetics of the infections revealed that Vp-GFP were localized on the surface of the ectoderm and in the mucus during the first hours of infection and in the mesenterial filaments thereafter. To better identify the E. pallida cells targeted by Vp-GFP infection, we used spectral flow cytometry. E. pallida cell types were identified based on their autofluorescent properties. corresponding to different cell types (algae and cnidocytes). We identified an AF10 population whose autofluorescent spectrum was identical to that of human monocytes/macrophage, suggesting that this spectral print could be the hallmark of phagocytic cells called "amebocytes''. AF10 autofluorescent cells had a high capacity to phagocytize Vp-GFP, suggesting their possible role in fighting infection. This was confirmed by microscopy using sorted AF10 and GFP-positive cells (AF10+/GFP+). The number of AF10+/GFP+ cells were reduced at 31°C, demonstrating that increased temperature not only damages tissue but also affects the immune response of E. pallida. In conclusion, our study provides a springboard for more comprehensive studies of immune defense in marine organisms and paves the way for future studies of the dynamics, activation patterns, and functional responses of immune cells when encountering pathogens.


Subject(s)
Sea Anemones , Vibrio parahaemolyticus , Animals , Humans , Sea Anemones/metabolism , Sea Anemones/microbiology , Temperature , Seawater , Vibrio parahaemolyticus/physiology , Phagocytes
17.
J Nat Prod ; 75(5): 935-41, 2012 May 25.
Article in English | MEDLINE | ID: mdl-22545792

ABSTRACT

Chemical investigation of a marine-derived fungus Nigrospora sp., isolated from an unidentified sea anemone, yielded two new hydroanthraquinone analogues, 4a-epi-9α-methoxydihydrodeoxybostrycin (1) and 10-deoxybostrycin (2), together with seven known anthraquinone derivatives (3-9). The structures of the two new compounds were established through extensive NMR spectroscopy as well as a single-crystal X-ray diffraction analysis using Cu Kα radiation. The antibacterial activities of compounds 1-9 and 10 acetyl derivatives (6a, 7a, 8a-8g, 9a) were evaluated in vitro. Compound 6a, the acetylated derivative of 6, exhibited promising activity against Bacillus cereus with an MIC value of 48.8 nM, which was stronger than that of the positive control ciprofloxacin (MIC = 1250 nM). Analysis of the antibacterial screening data for the metabolites and their acetyl derivatives revealed the key structural features required for this activity.


Subject(s)
Anthraquinones/isolation & purification , Anti-Bacterial Agents/isolation & purification , Ascomycota/chemistry , Sea Anemones/microbiology , Animals , Anthraquinones/chemistry , Anthraquinones/pharmacology , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Bacillus subtilis/drug effects , Ciprofloxacin/pharmacology , Crystallography, X-Ray , Escherichia coli/drug effects , Marine Biology , Microbial Sensitivity Tests , Micrococcus luteus/drug effects , Molecular Structure , Staphylococcus aureus/drug effects
18.
FEMS Microbiol Lett ; 368(3)2021 02 12.
Article in English | MEDLINE | ID: mdl-33417693

ABSTRACT

Sampling of different body regions can reveal highly specialized bacterial associations within the holobiont and facilitate identification of core microbial symbionts that would otherwise be overlooked by bulk sampling methods. Here, we characterized compartment-specific associations present within the model cnidarian Nematostella vectensis by dividing its morphology into three distinct microhabitats. This sampling design allowed us to uncover a capitulum-specific dominance of spirochetes within N. vectensis. Bacteria from the family Spirochaetaceae made up 66% of the community in the capitulum, while only representing 1.2% and 0.1% of the communities in the mesenteries and physa, respectively. A phylogenetic analysis of the predominant spirochete sequence recovered from N. vectensis showed a close relation to spirochetes previously recovered from wild N. vectensis. These sequences clustered closer to the recently described genus Oceanispirochaeta, rather than Spirochaeta perfilievii, supporting them as members of this clade. This suggests a prevalent and yet uncharacterized association between N. vectensis and spirochetes from the order Spirochaetales.


Subject(s)
Bacteria/classification , Host Microbial Interactions/physiology , Sea Anemones/microbiology , Spirochaetales/genetics , Animals , Bacteria/genetics , Biodiversity , Microbiota/genetics , Phylogeny
19.
Antonie Van Leeuwenhoek ; 96(3): 259-66, 2009 Oct.
Article in English | MEDLINE | ID: mdl-19390988

ABSTRACT

A pale yellow-colored, moderately halophilic, Gram-negative, catalase- and oxidase-positive, non-sporulating, rod-shaped, motile, aerobic bacterium, designated strain JSM 073008(T), was isolated from a sea anemone (Anthopleura xanthogrammica) collected from Naozhou Island, Leizhou Bay, South China Sea. The organism was able to grow with 1-20% (w/v) total salts (optimum, 5-10%), at pH 6.0-10.0 (optimum, pH 7.5) and 10-40 degrees C (optimum, 25-30 degrees C). The major cellular fatty acids were C(16:0), C(16:1) omega7c/iso-C(15:0) 2-OH and C(18:1) omega7c. The polar lipids consisted of phosphatidylethanolamine, phosphatidylglycerol and an unidentified phospholipid. The predominant respiratory quinone was Q-8 and the genomic DNA G + C content was 47.5 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain JSM 073008(T) should be assigned to the genus Alteromonas, being most closely related to Alteromonas hispanica F-32(T) (sequence similarity 96.9%), followed by Alteromonas genovensis LMG 24078(T) (96.6%) and Alteromonas litorea TF-22(T) (96.4%). The sequence similarities between the novel isolate and the type strains of other recognized Alteromonas species ranged from 95.9% (with Alteromonas stellipolaris ANT 69a(T)) to 94.5% (with Alteromonas simiduii BCRC 17572(T)). The combination of phylogenetic analysis, phenotypic characteristics and chemotaxonomic data supported the view that strain JSM 073008(T) represents a new species of the genus Alteromonas, for which the name Alteromonas halophila sp. nov. is proposed. The type strain is JSM 073008(T) (=CCTCC AA 207035(T) = KCTC 22164(T)).


Subject(s)
Alteromonas/isolation & purification , Sea Anemones/microbiology , Seawater/microbiology , Sodium Chloride/metabolism , Alteromonas/classification , Alteromonas/genetics , Alteromonas/metabolism , Animals , China , DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics
20.
Antonie Van Leeuwenhoek ; 96(1): 99-107, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19370398

ABSTRACT

A moderately halophilic, Gram-positive, catalase- and oxidase-positive, rod-shaped, aerobic bacterium, designated strain JSM 071068(T), was isolated from a sea anemone (Anthopleura xanthogrammica) collected from the Naozhou Island on the Leizhou Bay in the South China Sea. Cells were motile by means of peritrichous flagella and formed ellipsoidal endospores lying in subterminal swollen sporangia. Strain JSM 071068(T) was able to grow with 1-20% (w/v) total salts (optimum, 6-9%), at pH values of 6.0-10.0 (optimum, pH 7.5) and a temperature range of 10-35 degrees C (optimum, 25 degrees C). meso-Diaminopimelic acid was present in the cell-wall peptidoglycan. The predominant menaquinone was MK-7 and the major cellular fatty acids were anteiso-C(15:0), anteiso-C(17:0) and iso-C(15:0). The genomic DNA G + C content was 42.8 mol%. Phylogenetic analysis based on 16S rRNA gene sequence comparisons revealed that strain JSM 071068(T) belonged to the genus Halobacillus. The 16S rRNA gene sequence similarities between strain JSM 071068(T) and the type strains of the recognized Halobacillus species ranged from 97.9% (with Halobacillus alkaliphilus) to 95.3% (with Halobacillus kuroshimensis). The levels of DNA-DNA relatedness between the new isolate and the type strains of H. alkaliphilus, Halobacillus campisalis, Halobacillus halophilus and Halobacillus seohaensis were 25.6, 22.1, 10.8 and 13.2%, respectively. The combination of phylogenetic analysis, DNA-DNA relatedness, phenotypic characteristics and chemotaxonomic data supported the view that strain JSM 071068(T) represents a new species of the genus Halobacillus, for which the name Halobacillus naozhouensis sp. nov. is proposed, with JSM 071068(T) (=DSM 21183(T) =KCTC 13234(T)) as the type strain.


Subject(s)
Bacillaceae/classification , Bacillaceae/isolation & purification , Sea Anemones/microbiology , Animals , Bacillaceae/chemistry , Bacillaceae/genetics , Base Composition , Cell Wall/chemistry , China , Cluster Analysis , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Fatty Acids/analysis , Flagella , Hydrogen-Ion Concentration , Locomotion , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sequence Homology, Nucleic Acid , Sodium Chloride/metabolism , Spores, Bacterial/cytology , Temperature , Vitamin K 2/analysis
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