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1.
Cell ; 184(7): 1724-1739.e16, 2021 04 01.
Article in English | MEDLINE | ID: mdl-33667348

ABSTRACT

Divergence of gene function is a hallmark of evolution, but assessing functional divergence over deep time is not trivial. The few alleles available for cross-species studies often fail to expose the entire functional spectrum of genes, potentially obscuring deeply conserved pleiotropic roles. Here, we explore the functional divergence of WUSCHEL HOMEOBOX9 (WOX9), suggested to have species-specific roles in embryo and inflorescence development. Using a cis-regulatory editing drive system, we generate a comprehensive allelic series in tomato, which revealed hidden pleiotropic roles for WOX9. Analysis of accessible chromatin and conserved cis-regulatory sequences identifies the regions responsible for this pleiotropic activity, the functions of which are conserved in groundcherry, a tomato relative. Mimicking these alleles in Arabidopsis, distantly related to tomato and groundcherry, reveals new inflorescence phenotypes, exposing a deeply conserved pleiotropy. We suggest that targeted cis-regulatory mutations can uncover conserved gene functions and reduce undesirable effects in crop improvement.


Subject(s)
Genes, Plant , Genetic Pleiotropy/genetics , Homeodomain Proteins/genetics , Plant Proteins/genetics , Regulatory Sequences, Nucleic Acid/genetics , Alleles , Arabidopsis/genetics , CRISPR-Cas Systems/genetics , Chromatin/metabolism , Gene Expression Regulation, Plant , Inflorescence/genetics , Solanum lycopersicum/genetics , Mutagenesis , Plant Development/genetics , Plants, Genetically Modified/genetics , Plants, Genetically Modified/growth & development , Plants, Genetically Modified/metabolism , Promoter Regions, Genetic , Solanaceae/genetics , Solanaceae/growth & development
2.
Planta ; 260(4): 98, 2024 Sep 18.
Article in English | MEDLINE | ID: mdl-39292428

ABSTRACT

MAIN CONCLUSION: The key genetic variation underlying the evo-devo of ICS in Solanaceae may be further pinpointed using an integrated strategy of forward and reverse genetics studies under the framework of phylogeny. The calyx of Physalis remains persistent throughout fruit development. Post-flowering, the fruiting calyx is inflated rapidly to encapsulate the berry, giving rise to a "Chinese lantern" structure called inflated calyx syndrome (ICS). It is unclear how this novelty arises. Over the past 2 decades, the role of MADS-box genes in the evolutionary development (evo-devo) of ICS has mainly been investigated within Solanaceae. In this review, we analyze the main achievements, challenges, and new progress. ICS acts as a source for fruit development, provides a microenvironment to protect fruit development, and assists in long-distance fruit dispersal. ICS is a typical post-floral trait, and the onset of its development is triggered by specific developmental signals that coincide with fertilization. These signals can be replaced by exogenous gibberellin and cytokinin application. MPF2-like heterotopic expression and MBP21-like loss have been proposed to be two essential evolutionary events for ICS origin, and manipulating the related MADS-box genes has been shown to affect the ICS size, sepal organ identity, and/or male fertility, but not completely disrupt ICS. Therefore, the core genes or key links in the ICS biosynthesis pathways may have undergone secondary mutations during evolution, or they have not yet been pinpointed. Recently, we have made some encouraging progress in acquiring lantern mutants in Physalis floridana. In addition to technological innovation, we propose an integrated strategy to further analyze the evo-devo mechanisms of ICS in Solanaceae using forward and reverse genetics studies under the framework of phylogeny.


Subject(s)
Fruit , Solanaceae , Fruit/genetics , Fruit/growth & development , Solanaceae/genetics , Solanaceae/physiology , Solanaceae/growth & development , Phylogeny , MADS Domain Proteins/genetics , MADS Domain Proteins/metabolism , Gene Expression Regulation, Plant , Biological Evolution , Physalis/genetics , Physalis/growth & development , Physalis/physiology , Plant Proteins/genetics , Plant Proteins/metabolism , Flowers/genetics , Flowers/growth & development , Evolution, Molecular , Gibberellins/metabolism , East Asian People
3.
Int J Mol Sci ; 22(22)2021 Nov 21.
Article in English | MEDLINE | ID: mdl-34830426

ABSTRACT

In recent decades, Pakistan has suffered a decline in cotton production due to several factors, including insect pests, cotton leaf curl disease (CLCuD), and multiple abiotic stresses. CLCuD is a highly damaging plant disease that seriously limits cotton production in Pakistan. Recently, genome editing through CRISPR/Cas9 has revolutionized plant biology, especially to develop immunity in plants against viral diseases. Here we demonstrate multiplex CRISPR/Cas-mediated genome editing against CLCuD using transient transformation in N. benthamiana plants and cotton seedlings. The genomic sequences of cotton leaf curl viruses (CLCuVs) were obtained from NCBI and the guide RNA (gRNA) were designed to target three regions in the viral genome using CRISPR MultiTargeter. The gRNAs were cloned in pHSE401/pKSE401 containing Cas9 and confirmed through colony PCR, restriction analysis, and sequencing. Confirmed constructs were moved into Agrobacterium and subsequently used for transformation. Agroinfilteration in N. benthamiana revealed delayed symptoms (3-5 days) with improved resistance against CLCuD. In addition, viral titer was also low (20-40%) in infected plants co-infiltrated with Cas9-gRNA, compared to control plants (infected with virus only). Similar results were obtained in cotton seedlings. The results of transient expression in N. benthamiana and cotton seedlings demonstrate the potential of multiplex CRISPR/Cas to develop resistance against CLCuD. Five transgenic plants developed from three experiments showed resistance (60-70%) to CLCuV, out of which two were selected best during evaluation and screening. The technology will help breeding CLCuD-resistant cotton varieties for sustainable cotton production.


Subject(s)
Begomovirus/genetics , CRISPR-Cas Systems/genetics , Disease Resistance/genetics , Gossypium/genetics , Agrobacterium/genetics , Begomovirus/pathogenicity , Gossypium/growth & development , Gossypium/virology , Plant Diseases/genetics , Plant Diseases/virology , Plants, Genetically Modified/genetics , Plants, Genetically Modified/growth & development , Plants, Genetically Modified/virology , Solanaceae/genetics , Solanaceae/growth & development , Solanaceae/virology
4.
Mol Biol Rep ; 46(5): 5175-5184, 2019 Oct.
Article in English | MEDLINE | ID: mdl-31313133

ABSTRACT

Isoprenoids, the largest and most diverse class of secondary metabolites in plants, play an important role in plant growth and development. Isoprenoids can be synthesized by two distinct pathways: the methylerythritol-4-phosphate (MEP) pathway and the mevalonate (MVA) pathway. 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is the first step and a key regulatory enzyme of the MEP pathway in plants. The DXS gene has been reported to play a key role in seedling development, flowering, and fruit quality in plants of the Solanaceae, such as tomato, potato and tobacco. However, to improve our understanding and utilization of DXS genes, a thorough bioinformatics study is needed. In this study, 48 DXS genes were aligned and analyzed by computational tools to predict their protein properties, including molecular mass, theoretical isoelectric point (pI), signal peptides, transmembrane and conserved domains, and expression patterns. Sequence comparison analysis revealed strong conservation among the 48 DXS genes. Phylogenetic analysis indicated that all DXS genes were derived from one ancestor and could be classified into three groups with different expression patterns. Moreover, the functional divergence of DXS was restricted after gene duplication. The results suggested that the function and evolution of the DXS gene family were highly conserved and that the DXS genes of Group I may play a more important role than those of other groups.


Subject(s)
Computational Biology/methods , Solanaceae/enzymology , Transferases/genetics , Transferases/metabolism , Evolution, Molecular , Metabolic Networks and Pathways , Multigene Family , Phylogeny , Plant Proteins/chemistry , Plant Proteins/genetics , Plant Proteins/metabolism , Secondary Metabolism , Solanaceae/genetics , Solanaceae/growth & development , Terpenes/metabolism , Transferases/chemistry
5.
Int J Mol Sci ; 20(8)2019 Apr 23.
Article in English | MEDLINE | ID: mdl-31018626

ABSTRACT

Brunfelsia acuminata is a popular ornamental plant with different colors resulted from the rapid change of color after blooming. The petals at day one (purple), day three (white and purple) and day five (white) were used to analyze the reason of flower color change by a comparative proteomics approach, gas chromatography coupled to a time-of-flight mass analyzer (GC-TOF-MS) and quantitative real-time PCR (qRT-PCR). The results showed that the 52 identified proteins were classified into eight functional groups, 6% of which were related to the anthocyanin metabolic pathway. The expression levels of all anthocyanin proteins from the first day to fifth day were remarkably down-regulated, which was consistent with the changing patterns of the key genes (CHS, CHI and F3'5'H) in petals. Simultaneously, the main floral volatile components including Linalool and 2-Hexenal (E) were identified, and the contents of 2-Hexenal at day five increased dramatically. Moreover, the content of flavonoids and total phenolic increased at day five. The majority of the proteins associated with stress defense and senescence proteins were up-regulated and the activities of peroxidase (POD), superoxide dismutase (SOD) and catalase (CAT) in the petals at day five were significantly higher than others. It was concluded that the competition in the precursors of metabolic pathways occurs and causes the flow of metabolite to the pathways of floral scent and lignin derived from the shikimate pathway or degrade into others. Therefore, the anthocyanin content significantly decreased, and the petal color changed from deep purple to white.


Subject(s)
Anthocyanins/metabolism , Flowers/growth & development , Plant Proteins/metabolism , Solanaceae/growth & development , Anthocyanins/analysis , Anthocyanins/genetics , Biosynthetic Pathways , Flowers/chemistry , Flowers/genetics , Flowers/metabolism , Gene Expression Regulation, Plant , Pigmentation , Plant Proteins/analysis , Plant Proteins/genetics , Proteomics , Solanaceae/chemistry , Solanaceae/genetics , Solanaceae/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
6.
Ann Bot ; 121(6): 1211-1230, 2018 05 11.
Article in English | MEDLINE | ID: mdl-29471367

ABSTRACT

Background and Aims: The genetic basis of fruit development has been extensively studied in Arabidopsis, where major transcription factors controlling valve identity (i.e. FRUITFULL), replum development (i.e. REPLUMLESS) and the differentiation of the dehiscence zones (i.e. SHATTERPROOF, INDEHISCENT and ALCATRAZ) have been identified. This gene regulatory network in other flowering plants is influenced by duplication events during angiosperm diversification. Here we aim to characterize candidate fruit development genes in the Solanaceae and compare them with those of Brassicaceae. Methods: ALC/SPT, HEC/IND, RPL and AG/SHP homologues were isolated from publicly available databases and from our own transcriptomes of Brunfelsia australis and Streptosolen jamesonii. Maximum likelihood phylogenetic analyses were performed for each of the gene lineages. Shifts in protein motifs, as well as expression patterns of all identified homologues, are shown in dissected floral organs and fruits in different developmental stages of four Solanaceae species exhibiting different fruit types. Key Results: Each gene lineage has undergone different duplication time-points, resulting in very different genetic complements in the Solanaceae when compared with the Brassicaceae. In general, Solanaceae species have more copies of HEC1/2 and RPL than Brassicaceae, have fewer copies of SHP and the same number of copies of AG, ALC and SPT. Solanaceae lack IND orthologues, but have pre-duplication HEC3 homologues. The expression analyses showed opposite expression of SPT and ALC orthologues between dry- and fleshy-fruited species during fruit maturation. Fleshy-fruited species turn off RPL and SPT orthologues during maturation. Conclusions: The gynoecium patterning and fruit developmental genetic network in the Brassicaceae cannot be directly extrapolated to the Solanaceae. In Solanaceae ALC, SPT and RPL contribute differently to maturation of dry dehiscent and fleshy fruits, whereas HEC genes are not generally expressed in the gynoecium. RPL genes have broader expression patterns than expected.


Subject(s)
Flowers/anatomy & histology , Fruit/growth & development , Genes, Plant/genetics , Solanaceae/genetics , Brassicaceae/genetics , Brassicaceae/growth & development , Flowers/genetics , Flowers/growth & development , Gene Expression Profiling , Gene Expression Regulation, Developmental/genetics , Gene Expression Regulation, Developmental/physiology , Gene Expression Regulation, Plant/genetics , Gene Expression Regulation, Plant/physiology , Genes, Plant/physiology , Phyllachorales , Polymerase Chain Reaction , Sequence Homology , Solanaceae/anatomy & histology , Solanaceae/growth & development
7.
Ecotoxicol Environ Saf ; 155: 109-116, 2018 Jul 15.
Article in English | MEDLINE | ID: mdl-29510305

ABSTRACT

To determine whether the living hyperaccumulator plants and their straws have the same effects on the growth and heavy metal accumulation of common plants, two pot experiments (intercropping experiment and straw mulch experiment) were conducted to study the effects of living hyperaccumulator plants (Solanum photeinocarpum, Tagetes erecta, Galinsoga parviflora and Bidens pilosa) and their straws on the growth and cadmium (Cd) accumulation of common plant Cyphomandra betacea seedlings. Intercropping with T. erecta or B. pilosa promoted the growth of C. betacea seedlings compared with the monoculture, while intercropping with S. photeinocarpum or G. parviflora inhibited that. Intercropping with S. photeinocarpum decreased the Cd contents in the roots and shoots of C. betacea seedlings compared with the monoculture, but intercropping with the other plants did not. In the straw mulch experiment, the straw of S. photeinocarpum or T. erecta promoted the growth of C. betacea seedlings compared with the control, while the straw of G. parviflora or B. pilosa did not. The straw of S. photeinocarpum or T. erecta decreased the Cd contents in the shoots of C. betacea seedlings, and the straw of G. parviflora or B. pilosa increased the shoot Cd contents. Thus, intercropping with S. photeinocarpum and applying S. photeinocarpum or T. erecta straw can reduce the Cd uptake of C. betacea.


Subject(s)
Asteraceae/metabolism , Cadmium/toxicity , Soil Pollutants/toxicity , Solanaceae/drug effects , Biodegradation, Environmental , Plant Roots/drug effects , Plant Roots/growth & development , Plant Roots/metabolism , Plant Shoots/drug effects , Plant Shoots/growth & development , Plant Shoots/metabolism , Seedlings/drug effects , Seedlings/growth & development , Seedlings/metabolism , Solanaceae/growth & development , Solanaceae/metabolism
8.
World J Microbiol Biotechnol ; 34(9): 132, 2018 Aug 13.
Article in English | MEDLINE | ID: mdl-30105532

ABSTRACT

Actinomycetes, a Gram positive bacteria, well reported as a source of antibiotics, also possess potential to control various plant pathogens, besides acting as plant growth promoting agent. Chemicals in different forms are extensively being used in vegetable farming, adversely affecting the environment and consumer health. Microbial agent like actinomycetes can substantially replace these harmful chemicals, and have now started finding a place as an important input in to farming practices. Only selected vegetable crops belonging to 11 different families have been explored with use of actinomycetes as biocontrol and plant growth promoting agent till now. It provides ample opportunities to vegetable researchers, to further explore with use of this very important group of microorganisms, in order to achieve even higher production level of safe vegetables. Mycostop and Actinovate are two actinomycetes based formulations globally available for use in vegetable farming as a substitute for chemical formulations. Present review article has summarized the literature available on use of actinomycetes in vegetable farming. Existing wide gap in knowledge, and potential thrust areas for future research have also been projected.


Subject(s)
Actinobacteria/physiology , Crops, Agricultural/growth & development , Crops, Agricultural/microbiology , Plant Development , Vegetables/growth & development , Vegetables/microbiology , Agriculture , Amaranthaceae/growth & development , Amaranthaceae/microbiology , Amaryllidaceae/growth & development , Amaryllidaceae/microbiology , Antibiosis , Apiaceae/growth & development , Apiaceae/microbiology , Asparagaceae/growth & development , Asparagaceae/microbiology , Asteraceae/growth & development , Asteraceae/microbiology , Biological Control Agents , Brassicaceae/growth & development , Brassicaceae/microbiology , Cucurbitaceae/growth & development , Cucurbitaceae/microbiology , Fabaceae/growth & development , Fabaceae/microbiology , Plant Diseases/prevention & control , Solanaceae/growth & development , Solanaceae/microbiology , Zingiberaceae/growth & development , Zingiberaceae/microbiology
9.
Funct Integr Genomics ; 16(5): 513-28, 2016 Sep.
Article in English | MEDLINE | ID: mdl-27380018

ABSTRACT

DNA methyltransferase (DMTase) enzymes contribute to plant development and stress responses by de novo establishment and subsequent maintenance of DNA methylation during replication. However, the molecular mechanism underlying this activity remains obscure, especially in crop species. Using DMTase homolog complement in six Solanaceae species, we demonstrated here that their number remained conserved in Solanum lineage, whereas it was expanded in both pepper and Nicotiana benthamiana. Non-synonymous vs synonymous (Ka/Ks) substitution ratio revealed that most of the Solanaceous DMTase homologs undergo purifying selection. The genomic sequences of tomato DMT homologs in its wild relative, Solanum pennellii, remained highly conserved in their exons and methyltransferase domains. Structure analysis further revealed highly similar folding of DMTase homologs and conservation in the residues participating in protein-protein interaction in Solanum lineage, whereas a considerable diversification was observed of pepper homologs. Transcript profiling of DMTases highlighted both similar and distinct expression patterns of tomato homologs in other species during fruit development and stress responses. Overall, our analysis provides a strong basis for in-depth exploration of both conserved as well as distinct functions of tomato DMTase homologs in other economically important Solanaceae species.


Subject(s)
DNA Methylation/genetics , Methyltransferases/genetics , Plant Proteins/biosynthesis , Solanaceae/genetics , DNA, Plant/genetics , Gene Expression Regulation, Plant , Genome, Plant , Methyltransferases/biosynthesis , Methyltransferases/isolation & purification , Oligonucleotide Array Sequence Analysis , Phylogeny , Plant Proteins/genetics , Solanaceae/growth & development
10.
New Phytol ; 209(1): 407-17, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26224118

ABSTRACT

Phenotypic convergence is rampant throughout the tree of life. While recent studies have made significant progress in ascertaining the proximate mechanisms underlying convergent phenotypes, less is known about the frequency and predictability with which convergent phenotypes arise via the same or multiple pathways at the macroevolutionary scale. We investigated the proximate causes and evolutionary patterns of red flower color in the tomato family, Solanaceae, using large-scale data mining and new sequence data to reconstruct a megaphylogeny of 1341 species. We then combined spectral and anatomical data to assess how many times red flowers have evolved, the relative contribution of different pathways to independent origins of red, and whether the underlying pathway is predicted by phylogenetic relatedness. We estimated at least 30 relatively recent origins of red flowers using anthocyanins, carotenoids, or a dual production of both pigments, with significant phylogenetic signal in the use of anthocyanins and dual production, indicating that closely related red-flowered species tend to employ the same mechanism for coloration. Our study is the first to test whether developmental pathways exhibit phylogenetic signal and implies that historical contingency strongly influences the evolution of new phenotypes.


Subject(s)
Flowers/physiology , Solanaceae/physiology , Anthocyanins/metabolism , Biological Evolution , Carotenoids/metabolism , Color , Flowers/genetics , Flowers/growth & development , Phenotype , Phylogeny , Pigmentation , Solanaceae/genetics , Solanaceae/growth & development
11.
Plant Sci ; 347: 112203, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39069008

ABSTRACT

Root-root communication effects on several physiological and metabolic aspects among Solanaceae relatives were studied. We examined cherry (C) and field (F) tomato (Solanum lycopersicum) and bell pepper (B) (Capsicum annuum), comprising three degrees of relatedness (DOR): high (H-DOR; CC, FF and BB), medium (M-DOR; CF) and low (L-DOR; CB and FB). Plants were grown in pairs of similar or different plants on a paper-based and non-destructive root growth system, namely, rhizoslides. Root growth, including the proliferation of fine roots, and respiration increased as the DOR decreased and were highest in paired L-DOR plants, as was shown for root respiration that increased by 63, 110 and 88 % for C, F, and B when grown with B, B and F, respectively. On the other hand, root exudates of L-DOR plants had significantly lower levels of total organic carbon and protein than those of H-DOR plants, indicating different root-root communication between individuals with different DOR. Our findings indicate, for the first time, that carbon allocation to root growth, exudation and respiration depends on the degree of genetic relatedness, and that the degree of relatedness between individual plants plays a key role in the root-root communication within Solanaceae.


Subject(s)
Capsicum , Plant Roots , Solanum lycopersicum , Plant Roots/growth & development , Plant Roots/physiology , Plant Roots/metabolism , Plant Roots/genetics , Solanum lycopersicum/growth & development , Solanum lycopersicum/physiology , Solanum lycopersicum/genetics , Solanum lycopersicum/metabolism , Capsicum/growth & development , Capsicum/physiology , Capsicum/genetics , Capsicum/metabolism , Carbon/metabolism , Solanaceae/physiology , Solanaceae/growth & development , Solanaceae/genetics , Solanaceae/metabolism
12.
Molecules ; 18(1): 778-88, 2013 Jan 09.
Article in English | MEDLINE | ID: mdl-23303337

ABSTRACT

Tricolorin A acts as pre- and post-emergence plant growth inhibitor. In pre-emergence it displays broad-spectrum weed control, inhibiting germination of both monocotyledonous (Lolium mutliflorum and Triticum vulgare) and dicotyledonous (Physalis ixocarpa and Trifolium alexandrinum) seeds, being the dicotyledonous seeds the most inhibited. Tricolorin A also inhibited seedling growth, and seed respiration, and since the concentrations required for inhibiting both germination and respiration were similar, we suggest that respiration is one of its targets. Tricolorin A at 60 µM acts as a post- emergence plant growth inhibitor by reducing dry plant biomass by 62%, 37%, 33%, and 22% for L. multiflorum, T. alexandrinum, T. vulgare, and P. ixocarpa, respectively, 18 days after its application. In order to determine the potency of tricolorin A as a plant growth inhibitor, paraquat was used as control; the results indicate that tricolorin A acts as a non-selective post-emergence plant growth inhibitor similar to paraquat, since both reduced the biomass production in P. ixocarpa and T. alexandrinum. Therefore, we suggest that tricolorin A will be a good biodegradable herbicide for weeds.


Subject(s)
Glycosides/pharmacology , Herbicides/pharmacology , Seedlings/drug effects , Seeds/drug effects , Biomass , Germination/drug effects , Inhibitory Concentration 50 , Lolium/drug effects , Lolium/growth & development , Lolium/metabolism , Paraquat/pharmacology , Photosynthesis/drug effects , Plant Weeds/drug effects , Plant Weeds/growth & development , Plant Weeds/metabolism , Seedlings/growth & development , Seedlings/metabolism , Seeds/growth & development , Seeds/metabolism , Solanaceae/drug effects , Solanaceae/growth & development , Solanaceae/metabolism , Trifolium/drug effects , Trifolium/growth & development , Trifolium/metabolism , Triticum/drug effects , Triticum/growth & development , Triticum/metabolism , Weed Control
13.
Planta ; 236(4): 1247-60, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22711285

ABSTRACT

The inflated calyx syndrome (ICS) is a post-floral novelty within Solanaceae. Previous work has shown that MPF2-like MADS-box genes have been recruited for the development and evolution of ICS through heterotopic expression from vegetative to floral organs. ICS seems to be a plesiomorphic trait in Physaleae, but it has been secondarily lost in some lineages during evolution. We hypothesized that molecular and functional divergences of MPF2-like proteins might play a role in the loss of ICS. In this study we analyzed the phylogeny, selection and various functions of MPF2-like proteins with respect to the evolution of ICS. Directional selection of MPF2-like orthologs toward evolution of ICS was detected. While auto-activation capacity between proteins varies in yeast, MPF2-like interaction with floral MADS-domain proteins is robustly detected, hence substantiating their integration into the floral developmental programs. Dimerization with A- (MPF3) and E-function (PFSEP1/3) proteins seems to be essential for ICS development within Solanaceae. Moreover, the occurrence of the enlarged sepals, reminiscent of ICS, and MPF2-like interactions with these specific partners were observed in transgenic Arabidopsis. The interaction spectrum relevant to ICS seems to be plesiomorphic, reinforcing the plesiomorphy of this trait. The inability of some MPF2-like to interact with either the A-function or any of the E-function partners characterized is correlated with the loss of ICS in the lineages that showed a MPF2-like expression in the calyx. Our findings suggest that, after recruitment of MPF2-like genes for floral development, diversification in their coding region due to directional selection leads to a modification of the MADS-domain protein interacting spectrum, which might serve as a constraint for the evolution of ICS within Solanaceae.


Subject(s)
Evolution, Molecular , Flowers/genetics , MADS Domain Proteins/genetics , Solanaceae/genetics , Arabidopsis/genetics , Arabidopsis/growth & development , Arabidopsis/metabolism , Chimera , Flowers/growth & development , Flowers/metabolism , Gene Expression Regulation, Plant/genetics , Gene Library , MADS Domain Proteins/metabolism , Phylogeny , Plant Proteins/genetics , Plant Proteins/metabolism , Plants, Genetically Modified , Protein Interaction Mapping , Protein Multimerization , Protein Structure, Tertiary , Selection, Genetic , Solanaceae/growth & development , Solanaceae/metabolism
14.
Plant Cell Rep ; 31(9): 1713-22, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22717672

ABSTRACT

UNLABELLED: Virus-induced gene silencing (VIGS) is a robust technique for identifying the functions of plant genes. Tobacco rattle virus (TRV)-mediated VIGS has been commonly used in many plants. In order to overcome the limitations of existing agroinoculation methods, we report an easy and effective method of agroinoculation for virus-induced gene silencing-sprout vacuum-infiltration (SVI). Using sprout vacuum-infiltration, we have successfully silenced the expression of phytoene desaturase and Mg-protoporphyrin chelatase genes in four important solanaceous crops, including tomato, eggplant, pepper, and Nicotiana benthamiana. The gene-silenced phenotypes are conspicuous in 1-week-old plants. The method is simple, low cost and rapid compared to other techniques such as leaf infiltration or agrodrench. It may be more practical for studying gene function in the early stages of plant growth. An important aspect of SVI is that it will be used for high-throughput VIGS screens in the future. SVI will be an effective tool to overcome the limitations of current inoculation methods and to facilitate large-scale VIGS analysis of cDNA libraries. KEY MESSAGE: SVI is a simple, low cost agroinoculation method for VIGS. It is practical for studying the function of genes expressed in early stages of plant growth and high-throughput VIGS screens.


Subject(s)
Agrobacterium/metabolism , Gene Silencing , Genetic Techniques , Germination , Plant Viruses/metabolism , Solanaceae/virology , Vacuum , Chlorophyll/metabolism , Flowers/virology , Fruit/virology , Solanum lycopersicum/virology , Oxidoreductases/metabolism , Phenotype , Plant Leaves/virology , Recombination, Genetic/genetics , Seedlings/virology , Solanaceae/growth & development , Species Specificity
15.
J Insect Sci ; 12: 106, 2012.
Article in English | MEDLINE | ID: mdl-23438050

ABSTRACT

This paper describes the morphology and behavior of the immature stages of Oleria baizana (Haensch) (Lepidoptera: Nymphalidae) from northeastern Ecuador. Brugmansia aurea Lagerh. (Solanales: Solanaceae) is the larval food plant. Eggs are laid singly, off of the host plant in the leaf litter. During the night, larvae climb a food plant seedling and sever a leaf petiole, parachuting with the leaf to the ground where they remain while feeding. Oleria baizana has five larval stadia, and individuals take 77 days to mature from oviposition to adult stage.


Subject(s)
Butterflies/anatomy & histology , Butterflies/physiology , Animals , Butterflies/growth & development , Ecuador , Feeding Behavior , Food Chain , Larva/anatomy & histology , Larva/growth & development , Larva/physiology , Oviposition , Ovum/physiology , Pupa/anatomy & histology , Pupa/growth & development , Solanaceae/growth & development
16.
Ann Bot ; 107(9): 1545-56, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21441246

ABSTRACT

BACKGROUND: Gene duplication has often been invoked as a key mechanism responsible for evolution of new morphologies. The floral homeotic B-group gene family has undergone a number of gene duplication events, and yet the functions of these genes appear to be largely conserved. However, detailed comparative analysis has indicated that such duplicate genes have considerable cryptic variability in their functions. In the Solanaceae, two duplicate B-group gene lineages have been retained in three subfamilies. Comparisons of orthologous genes across members of the Solanaceae have demonstrated that the combined function of all four B-gene members is to establish petal and stamen identity, but that this function was partitioned differently in each species. These observations emphasize both the robustness and the evolvability of the B-system. SCOPE: We provide an overview of how the B-function genes can robustly specify petal and stamen identity and at the same time evolve through changes in protein-protein interaction, gene expression patterns, copy number variation or alterations in the downstream genes they control. By using mathematical models we explore regulatory differences between species and how these impose constraints on downstream gene regulation. CONCLUSIONS: Evolvability of the B-genes can be understood through the multiple ways in which the B-system can be robust. Quantitative approaches should allow for the incorporation of more biological realism in the representations of these regulatory systems and this should contribute to understanding the constraints under which different B-systems can function and evolve. This, in turn, can provide a better understanding of the ways in which B-genes have contributed to flower diversity.


Subject(s)
Flowers/genetics , Gene Duplication/genetics , Genes, Plant/genetics , Solanaceae/genetics , Computer Simulation , DNA Copy Number Variations/genetics , Evolution, Molecular , Flowers/growth & development , Gene Expression Regulation, Developmental , Gene Expression Regulation, Plant , Gene Regulatory Networks , Genes, Homeobox/genetics , MADS Domain Proteins/genetics , Models, Biological , Phenotype , Phylogeny , Protein Interaction Mapping , Solanaceae/growth & development
17.
Am J Bot ; 98(9): 1415-36, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21875970

ABSTRACT

PREMISE OF THE STUDY: An anatomical examination of dry and fleshy fruits within the Solanaceae was carried out to identify comparable stages throughout development as well as features exclusive to each type of fruit. We studied fruit development of Nicotiana and Petunia, which have the plesiomorphic capsular fruit; Solanum and Iochroma, characterized by a derived fleshy berry; Cestrum, an independent origin of a fleshy fruit; and Datura, a reversion to a dry fruit. • METHODS: Pre- and postanthesis carpels and fruits of all species were collected, sectioned, stained, and examined using light microscopy. • KEY RESULTS: Comparable stages of carpel and fruit development were identified in all species. Furthermore, anatomical and developmental features were identified that characterize capsules in Solanaceae, including lack of increase in the number of pericarp cell layers, formation of a sclerified endocarp, and elongation of the epidermal cells of the placenta. Pericarps of fleshy fruits of the Solanoideae are characterized by abundant collenchyma, an increase in the number of cell layers, and a parenchymatous endocarp often expanding into the locules. Anatomical data show that early developmental stages of the fruit of Cestrum, a berry, are similar to the capsular fruits of Petunia and Nicotiana; similarly, Datura, one of the few capsular members of the Solanoideae, shares several anatomical features with closely related berried taxa. • CONCLUSIONS: Ontogenetically, all fleshy or all dry fruits do not necessarily share a common developmental ground plan. Independent evolution of fleshiness, sclerification, dryness, and dehiscence are discussed in a phylogenetic context.


Subject(s)
Solanaceae/growth & development , Solanaceae/anatomy & histology
18.
J Chem Ecol ; 37(5): 492-5, 2011 May.
Article in English | MEDLINE | ID: mdl-21523430

ABSTRACT

Plant defensive compounds may be a cost rather than a benefit when plants are attacked by specialist insects that may overcome chemical barriers by strategies such as sequestering plant compounds. Plants may respond to specialist herbivores by compensatory growth rather than chemical defense. To explore the use of defensive chemistry vs. compensatory growth we studied Brugmansia suaveolens (Solanaceae) and the specialist larvae of the ithomiine butterfly Placidina euryanassa, which sequester defensive tropane alkaloids (TAs) from this host plant. We investigated whether the concentration of TAs in B. suaveolens was changed by P. euryanassa damage, and whether plants invest in growth, when damaged by the specialist. Larvae feeding during 24 hr significantly decreased TAs in damaged plants, but they returned to control levels after 15 days without damage. Damaged and undamaged plants did not differ significantly in leaf area after 15 days, indicating compensatory growth. Our results suggest that B. suaveolens responds to herbivory by the specialist P. euryanassa by investing in growth rather than chemical defense.


Subject(s)
Butterflies/physiology , Host-Parasite Interactions , Larva/physiology , Solanaceae/growth & development , Solanaceae/parasitology , Tropanes/metabolism , Animals , Solanaceae/metabolism
19.
Mol Biol Evol ; 26(11): 2463-73, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19608636

ABSTRACT

The Chinese lantern, which is the inflated calyx syndrome (ICS) of Physalis, is formed by MPF2 in the presence of the plant hormones, cytokinin and gibberellin. MPF2 knockdown mutants of Physalis have small leaves, no ICS, and are male sterile, thus, revealing three MPF2-related functions. Of the close relatives of Physalis, Tubocapsicum has only a rudimentary calyx, whereas others, like the Withania species, have ICS. From all Withania samples tested, two classes of MPF2-like orthologs, MPF2-like-A and MPF2-like-B, were isolated, whereas only the latter class was obtained from tetraploid Tubocapsicum. Though distinct differences can be observed between MPF2-like-A and MPF2-like-B proteins, that is MPF2-like-A proteins have an aberrant structure in that they have a three amino acid deletion in their C-domain and an eight amino acid extension at the C-terminal end, MPF2-like-A genes are phylogenetically closer to the Physalis MPF2-like genes. Unlike MPF2-like-B, the overexpression of MPF2-like-A in Arabidopsis revealed extra large sepals thus suggesting that MPF2-like-A genes are very likely responsible for the ICS formation in Withania. This correlated with the expression pattern of MPF2-like-A in vegetative and flower tissues, whereas MPF2-like-B is expressed only in vegetative tissues of Withania. In Tubocapsicum, however, MPF2-like-B RNA is detectable in all tissues tested. Finally, positive Darwinian selection was observed in the branch leading to Physalis MPF2-like and Withania MPF2-like-A proteins, followed by purifying selection once the trait had evolved. By contrast, purifying selection was detected for all other MPF2-like proteins tested. The contribution of the MPF2-like gene duplication to subfunctionalization is discussed.


Subject(s)
Flowers/genetics , Plant Proteins/genetics , Selection, Genetic/physiology , Solanaceae/genetics , Arabidopsis/genetics , Blotting, Southern , Phylogeny , Plant Proteins/classification , Plant Proteins/physiology , Plants, Genetically Modified/genetics , Promoter Regions, Genetic , Selection, Genetic/genetics , Solanaceae/growth & development , Solanum tuberosum/genetics , Solanum tuberosum/growth & development
20.
PLoS One ; 15(8): e0237594, 2020.
Article in English | MEDLINE | ID: mdl-32817631

ABSTRACT

Traits of chemically-defended animals can change as an individual grows and matures, and both theoretical and empirical evidence favour a direction of change from crypsis to aposematism. This study examines the suite of traits involved in an unusual opposite shift from aposematism to crypsis in a neotropical toxic-plant-feeding Romaleid grasshopper, Chromacris psittacus (Gerstaecker, 1873). Field surveys, behavioural observations and a rearing experiment compare host plant choice, aggregation, locomotion and thermoregulation between life history stages. Results showed that both nymphs and adults fed exclusively on a narrow range of Solanaceae plants, suggesting that the shift in defensive syndrome is not due to a change in chemical defense. Instead, nymphal aposematism appears linked to aggregation in response to plant-based selection pressures. Slow nymphal development suggests a cost to feeding on toxic plant compounds, and grouping could mitigate this cost. Grouping also increases conspicuousness, and hence can favour warning colourating in chemically-defended insects. The role of diet breadth in aposematism is poorly understood, and these results suggest how constraints imposed by feeding on toxic plants can generate bottom-up selection pressures shaping the adaptive suites of traits of chemically-defended animals.


Subject(s)
Adaptation, Physiological , Biological Evolution , Biological Mimicry , Feeding Behavior , Grasshoppers/physiology , Solanaceae/growth & development , Animals , Behavior, Animal , Models, Biological , Predatory Behavior
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