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1.
Bioinformatics ; 39(8)2023 08 01.
Article in English | MEDLINE | ID: mdl-37589594

ABSTRACT

MOTIVATION: Sphagnum-dominated peatlands store a substantial amount of terrestrial carbon. The genus is undersampled and under-studied. No experimental crystal structure from any Sphagnum species exists in the Protein Data Bank and fewer than 200 Sphagnum-related genes have structural models available in the AlphaFold Protein Structure Database. Tools and resources are needed to help bridge these gaps, and to enable the analysis of other structural proteomes now made possible by accurate structure prediction. RESULTS: We present the predicted structural proteome (25 134 primary transcripts) of Sphagnum divinum computed using AlphaFold, structural alignment results of all high-confidence models against an annotated nonredundant crystallographic database of over 90,000 structures, a structure-based classification of putative Enzyme Commission (EC) numbers across this proteome, and the computational method to perform this proteome-scale structure-based annotation. AVAILABILITY AND IMPLEMENTATION: All data and code are available in public repositories, detailed at https://github.com/BSDExabio/SAFA. The structural models of the S. divinum proteome have been deposited in the ModelArchive repository at https://modelarchive.org/doi/10.5452/ma-ornl-sphdiv.


Subject(s)
Plant Proteins , Proteome , Sphagnopsida , Sphagnopsida/chemistry , Sphagnopsida/enzymology , Plant Proteins/chemistry , Workflow , Structural Homology, Protein
2.
Environ Sci Technol ; 56(22): 15661-15671, 2022 11 15.
Article in English | MEDLINE | ID: mdl-36326287

ABSTRACT

The smallest fraction of plastic pollution, submicron plastics (SMPs <1 µm) are expected to be ubiquitous in the environment. No information is available about SMPs in peatlands, which have a key role in sequestering carbon in terrestrial ecosystems. It is unknown how these plastic particles might behave and interact with (micro)organisms in these ecosystems. Here, we show that the chemical composition of polystyrene (PS) and poly(vinyl chloride) (PVC)-SMPs influenced their adsorption to peat. Consequently, this influenced the accumualtion of SMPs by Sphagnum moss and the composition and diversity of the microbial communities in peatland. Natural organic matter (NOM), which adsorbs from the surrounding water to the surface of SMPs, decreased the adsorption of the particles to peat and their accumulation by Sphagnum moss. However, the presence of NOM on SMPs significantly altered the bacterial community structure compared to SMPs without NOM. Our findings show that peatland ecosystems can potentially adsorb plastic particles. This can not only impact mosses themselves but also change the local microbial communities.


Subject(s)
Microbiota , Sphagnopsida , Sphagnopsida/chemistry , Sphagnopsida/microbiology , Soil/chemistry , Adsorption , Plastics , Bacteria
3.
Photochem Photobiol Sci ; 20(3): 379-389, 2021 Mar.
Article in English | MEDLINE | ID: mdl-33721276

ABSTRACT

Bryophytes, including Sphagnum, are common species in alpine and boreal regions especially on mires, where full sunlight exposes the plants to the damaging effects of UV radiation. Sphagnum species containing UV-protecting compounds might offer a biomass source for nature-based sunscreens to replace the synthetic ones. In this study, potential compounds and those linked in cell wall structures were obtained by using methanol and alkali extractions and the UV absorption of these extracts from three common Sphagnum moss species Sphagnum magellanicum, Sphagnum fuscum and Sphagnum fallax collected in spring and autumn from western Finland are described. Absorption spectrum screening (200-900 nm) and luminescent biosensor (Escherichia coli DPD2794) methodology were used to examine and compare the protection against UV radiation. Additionally, the antioxidant potential was evaluated using hydrogen peroxide scavenging (SCAV), oxygen radical absorbance capacity (ORAC) and ferric reducing absorbance capacity (FRAP). Total phenolic content was also determined using the Folin-Ciocalteu method. The results showed that methanol extractable compounds gave higher UV absorption with the used methods. Sphagnum fallax appeared to give the highest absorption in UV-B and UV-A wavelengths. In all assays except the SCAV test, the methanol extracts of Sphagnum samples collected in autumn indicated the highest antioxidant capacity and polyphenol content. Sphagnum fuscum implied the highest antioxidant capacity and phenolic content. There was low antioxidant and UV absorption provided by the alkali extracts of these three species.


Subject(s)
Plant Extracts/chemistry , Sphagnopsida/chemistry , Ultraviolet Rays , Antioxidants/chemistry , Biosensing Techniques , DNA Damage/radiation effects , Gas Chromatography-Mass Spectrometry , Phenols/chemistry , Plant Extracts/analysis , Polyphenols/analysis , Polyphenols/chemistry , Seasons , Spectrophotometry , Sphagnopsida/metabolism
4.
Molecules ; 26(3)2021 Jan 29.
Article in English | MEDLINE | ID: mdl-33573075

ABSTRACT

Anthocyanins with various functions in nature are one of the most important sources of colours in plants. They are based on anthocyanidins or 3-deoxyanthocyanidins having in common a C15-skeleton and are unique in terms of how each anthocyanidin is involved in a network of equilibria between different forms exhibiting their own properties including colour. Sphagnorubin C (1) isolated from the cell wall of peat moss (Sphagnum sp.) was in fairly acidic and neutral dimethyl sulfoxide characterized by nuclear magnetic resonance (NMR) and ultraviolet-visible (UV-vis) absorption techniques. At equilibrium, the network of 1 behaved as a two-component colour system involving the reddish flavylium cationic and the yellow trans-chalcone forms. The additional D- and E-rings connected to the common C15-skeleton extend the π-conjugation within the molecule and provide both bathochromic shifts in the absorption spectra of the various forms as well as a low isomerization barrier between the cis- and trans-chalcone forms. The hemiketal and cis-chalcone forms were thus not observed experimentally by NMR due to their short lives. The stable, reversible network of 1 with good colour contrast between its two components has previously not been reported for other natural anthocyanins and might thus have potential in future photochromic systems. This is the first full structural characterization of any naturally occurring anthocyanin chalcone form.


Subject(s)
Anthocyanins/chemistry , Chalcone/chemistry , Sphagnopsida/chemistry , Anthocyanins/genetics , Color , Isomerism , Kinetics , Magnetic Resonance Spectroscopy , Molecular Structure , Pigmentation/genetics , Sphagnopsida/genetics
5.
Bull Exp Biol Med ; 170(4): 461-465, 2021 Feb.
Article in English | MEDLINE | ID: mdl-33713226

ABSTRACT

Humic acids extracted with sodium pyrophosphate from Oligotrophic Sphagnum magellanicum peat reduce mitogen-stimulated production of anti-inflammatory cytokine IL-10 by mouse peritoneal macrophages and do not affect the secretion of IL-4 by lymphocytes. The studied humic acid sample stimulates the production of proinflammatory cytokines IL-12, TNFα, IL-1ß, and IFNγ by immunocompetent mouse cells and human mononuclear cells. Course administration of humic acids to mice enhances the humoral immunity, increasing the number of antibody-forming cells in the spleen and the titer of antibodies in the blood serum after immunization with sheep red blood cells.


Subject(s)
Humic Substances , Soil , Animals , Interleukin-12/metabolism , Interleukin-1beta/metabolism , Macrophages, Peritoneal/metabolism , Mice, Inbred C57BL , Sphagnopsida/chemistry , Tumor Necrosis Factor-alpha/metabolism
6.
Ecotoxicology ; 29(10): 1815-1829, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32037482

ABSTRACT

Mercury (Hg) is a potent neurotoxin that biomagnifies within both aquatic and terrestrial food webs resulting in adverse physiological and reproductive effects on impacted wildlife populations, including songbird communities. Due to reducing conditions, wetland ecosystems promote the formation of methylmercury. Regional studies have documented elevated blood mercury concentrations in songbird species within these habitat types. The overall goal of this research was to examine spatial and seasonal patterns of Hg exposure for targeted songbird species within Sphagnum bog wetland systems and compare these patterns with adjacent upland forests in the Adirondack Park of New York State. Project sampling was conducted at study plots within four Sphagnum bog and associated upland forest sites from May - August during the 2008, 2009, and 2011 field seasons. The overall results documented: (1) blood Hg concentrations were elevated in songbird species inhabiting Sphagnum bog habitats as compared to nearby upland forest species; (2) target species within each habitat type exhibited consistent species-level patterns in blood Hg concentrations at each study site; and (3) no seasonal change in blood Hg concentrations within Sphagnum bog habitats was documented, but an increasing, followed by a decreasing seasonal pattern in mercury exposure was detected for upland forest species. Habitat type was demonstrated to influence avian Hg exposure levels. Moreover, Sphagnum bog ecosystems may be contributing to elevated Hg concentrations in biota within the surrounding environment. Seasonal patterns for blood Hg concentrations were found to vary between habitat type and are likely related to a combination of variables including habitat-driven Hg concentrations in prey items, seasonal dietary shifts, and annual molting cycles. This project emphasizes the importance of prioritizing future research efforts within identified high Hg habitat types, specifically wetland systems, to better characterize associated avian exposure levels, estimate the spatial extent of wetland systems on the surrounding environment, and identify locations of potential biological hotspots across the Adirondack Park.


Subject(s)
Environmental Monitoring , Environmental Pollutants/analysis , Mercury/analysis , Songbirds , Sphagnopsida/chemistry , Animals , New York , Wetlands
7.
Bull Exp Biol Med ; 168(5): 651-653, 2020 Mar.
Article in English | MEDLINE | ID: mdl-32246373

ABSTRACT

A course of treatment with humic acids extracted with sodium pyrophosphate from high-moor pine-peat moss-cotton grass peat improves humoral immune response of C57BL/6 mice, stimulates the production of TNFα, IL-1ß, and IL-12 by the animal peritoneal macrophages and the production of IFNγ and TNFα by donor peripheral blood mononuclears, causing no changes in the production of IL-10 in vitro.


Subject(s)
Cytokines/metabolism , Humic Substances , Immunity, Humoral/drug effects , Animals , Cells, Cultured , Humans , Humic Substances/analysis , Immunity, Humoral/physiology , Immunocompetence/drug effects , Leukocytes, Mononuclear/drug effects , Leukocytes, Mononuclear/metabolism , Macrophages, Peritoneal/drug effects , Macrophages, Peritoneal/metabolism , Male , Mice , Mice, Inbred C57BL , Pinus/chemistry , Poaceae/chemistry , Sphagnopsida/chemistry
8.
Environ Geochem Health ; 41(4): 1637-1646, 2019 Aug.
Article in English | MEDLINE | ID: mdl-28780675

ABSTRACT

Peat moss-derived biochars were produced at the pyrolytic temperatures of 300, 500, and 700 °C and were tested for evaluating the removal efficiency of volatile organic compounds (VOCs) from waters. As the pyrolytic temperature increases, the carbon contents were increased from 66 to 84%, and the contents of hydrogen and oxygen were decreased from 4 to 1% and from 19 to 4%, respectively. The surface areas of the biochars were 2 m2 g-1 at the pyrolysis temperature of 300 °C and were increased to 200 and 300 m2 g-1 at 500 and 700 °C, respectively. Results of FTIR analysis showed that functional groups such as hydroxyl, nitro, and carboxyl groups were observed in the biochar produced at 300 °C; however, the functional groups were removed in the biochars produced at higher temperatures. Sorption kinetics and equilibrium experiments were conducted with selected six VOCs of benzene (BZN), toluene (TOL), ethylbenzene (EBZ), p-xylene (pXYL), trichloroethylene (TCE), and tetrachloroethylene (PCE), which are the most common VOCs found in contaminated groundwater of South Korea. Sorption equilibrium was attained in 6 h with the constants of first order kinetic rate of 0.5 h-1 for the VOCs tested. Freundlich isotherm well described the adsorption of VOCs to the biochars. Biochar produced at 500 °C showed the highest sorption capacity for all VOCs with an average Kf of 7692 (±2265), although biochars produced at 300 °C (Kf = 3146 ± 629) and 700 °C (Kf = 2776 ± 2693) showed the similar sorption capacity. The biochars produced at 500 °C can be an excellent remover of VOCs in contaminated groundwater.


Subject(s)
Charcoal/chemistry , Sphagnopsida/chemistry , Volatile Organic Compounds/isolation & purification , Water Pollutants, Chemical/isolation & purification , Adsorption , Carbon/analysis , Groundwater/chemistry , Hydrogen/analysis , Kinetics , Oxygen/analysis , Pyrolysis , Republic of Korea , Temperature , Trichloroethylene/chemistry , Trichloroethylene/isolation & purification , Volatile Organic Compounds/chemistry , Water Pollutants, Chemical/chemistry , Water Purification
9.
J Environ Sci (China) ; 77: 264-272, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30573090

ABSTRACT

Plant communities play an important role in the C-sink function of peatlands. However, global change and local perturbations are expected to modify peatland plant communities, leading to a shift from Sphagnum mosses to vascular plants. Most studies have focused on the direct effects of modification in plant communities or of global change (such as climate warming, N fertilization) in peatlands without considering interactions between these disturbances that may alter peatlands' C function. We set up a mesocosm experiment to investigate how Greenhouse Gas (CO2, CH4, N2O) fluxes, and dissolved organic carbon (DOC) and total dissolved N (TN) contents are affected by a shift from Sphagnum mosses to Molinia caerulea dominated peatlands combined with N fertilization. Increasing N deposition did not alter the C fluxes (CO2 exchanges, CH4 emissions) or DOC content. The lack of N effect on the C cycle seems due to the capacity of Sphagnum to efficiently immobilize N. Nevertheless, N supply increased the N2O emissions, which were also controlled by the plant communities with the presence of Molinia caerulea reducing N2O emissions in the Sphagnum mesocosms. Our study highlights the role of the vegetation composition on the C and N fluxes in peatlands and their responses to the N deposition. Future research should now consider the climate change in interaction to plants community modifications due to their controls of peatland sensitivity to environmental conditions.


Subject(s)
Carbon Cycle/drug effects , Nitrogen Cycle/drug effects , Nitrogen/pharmacology , Poaceae/chemistry , Poaceae/drug effects , Sphagnopsida/chemistry , Sphagnopsida/drug effects , Fertilizers/analysis , Nitrogen Fixation/drug effects
10.
J Chem Ecol ; 44(12): 1146-1157, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30294748

ABSTRACT

Sphagnum mosses mediate long-term carbon accumulation in peatlands. Given their functional role as keystone species, it is important to consider their responses to ecological gradients and environmental changes through the production of phenolics. We compared the extent to which Sphagnum phenolic production was dependent on species, microhabitats and season, and how surrounding dwarf shrubs responded to Sphagnum phenolics. We evaluated the phenolic profiles of aqueous extracts of Sphagnum fallax and Sphagnum magellanicum over a 6-month period in two microhabitats (wet lawns versus dry hummocks) in a French peatland. Phenolic profiles of water-soluble extracts were measured by UHPLC-QTOF-MS. Andromeda polifolia mycorrhizal colonization was quantified by assessing the intensity of global root cortex colonization. Phenolic profiles of both Sphagnum mosses were species-, season- and microhabitat- dependant. Sphagnum-derived acids were the phenolics mostly recovered; relative quantities were 2.5-fold higher in S. fallax than in S. magellanicum. Microtopography and vascular plant cover strongly influenced phenolic profiles, especially for minor metabolites present in low abundance. Higher mycorrhizal colonization of A. polifolia was found in lawns as compared to hummocks. Mycorrhizal abundance, in contrast to environmental parameters, was correlated with production of minor phenolics in S. fallax. Our results highlight the close interaction between mycorrhizae such as those colonizing A. polifolia and the release of Sphagnum phenolic metabolites and suggest that Sphagnum-derived acids and minor phenolics play different roles in this interaction. This work provides new insight into the ecological role of Sphagnum phenolics by proposing a strong association with mycorrhizal colonization of shrubs.


Subject(s)
Ericaceae/growth & development , Mycorrhizae/growth & development , Sphagnopsida/chemistry , Chromatography, High Pressure Liquid , Ecosystem , Ericaceae/microbiology , Phenols/analysis , Phenols/chemistry , Plant Roots/metabolism , Plant Roots/microbiology , Principal Component Analysis , Seasons , Soil/chemistry , Spectrometry, Mass, Electrospray Ionization , Sphagnopsida/metabolism , Water/chemistry
11.
Georgian Med News ; (276): 182-186, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29697404

ABSTRACT

The objective of the research was development extraction process of humic substances from sphagnum peat peloids, selection of extragent and characterization of humic substances. The objects of the research: Kolkheti peat peloids (Ispani, Anaklia, Churia, Chirukhi, Peranga) of different formation phases. Research was held using modern instrumental methods of analysis: UV spectrophotometer, Scanning Electron Microscopy, Centrifuge, Dry oven, Ultraturax. In the research extraction process of humic substances from sphagnum peat peloids was developed and composition of humic substances was studied, also E4/E6 humification coefficient was evaluated. Based on the results extraction conditions of humic substances from the peat peloids samples were determined: a) extragent with maximum yield - 1.0N NaOH; b) mixing type - KA-ULTRA TURAX-T18 - 20 000 rpm/min; c) Precipitant of humic substances -10% HCL. Composition of humic substances are studied in the samples and their relatively high content is determined in Anaklia and Churia sphagnum peat peloids. For characterization of humic substances E4/E6 humification coefficient was evaluated. Low ration of E4/E6 < 5 was established in anaklia, churia and ispani peat peloids. High ration of E4/E6 < 10 coefficient is determined in chirukhi and peranga peat peloids.


Subject(s)
Humic Substances/analysis , Soil/chemistry , Sphagnopsida/chemistry
12.
Ecotoxicol Environ Saf ; 144: 208-215, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28623799

ABSTRACT

Since the methodological parameters of moss bag biomonitoring have rarely been investigated for the application in agricultural areas, two mosses, Sphagnum girgensohnii (a species of the most recommended biomonitoring genus) and Hypnum cupressiforme (commonly available), were verified in a vineyard ambient. The moss bags were exposed along transects in six vineyard parcels during the grapevine season (March‒September 2015). To select an appropriate period for the reliable 'signal' of the element enrichment in the mosses, the bags were simultaneously exposed during five periods (3 × 2 months, 1 × 4 months, and 1 × 6 months). Assuming that vineyard is susceptible to contamination originated from different agricultural treatments, a wide range of elements (41) were determined in the moss and topsoil samples. The mosses were significantly enriched by the elements during the 2-month bag exposure which gradually increasing up to 6 months, but Cu and Ni exhibited the noticeable fluctuations during the grapevine season. However, the 6-month exposure of moss bags could be recommended for comparative studies among different vineyards because it reflects the ambient pollution comprising unpredictable treatments of grapevine applied during the whole season. Although higher element concentrations were determined in S. girgensohnii than H. cupressiforme, both species reflected the spatio-temporal changes in the ambient element content. Moreover, the significant correlation of the element (Cr, Cu, Sb, and Ti) concentrations between the mosses, and the same pairs of the elements correlated within the species, imply the comparable use of S. girgensohnii and H. cupressiforme in the vineyard (agricultural) ambient. Finally, both the moss bags and the soil analyses suggest that vineyard represents a dominant diffuse pollution source of As, Cr, Cu, Ni, Fe, and V.


Subject(s)
Air Pollutants/analysis , Bryopsida/chemistry , Environmental Monitoring/methods , Metals, Rare Earth/analysis , Sphagnopsida/chemistry , Trace Elements/analysis , Farms , Seasons , Serbia , Species Specificity , Vitis/growth & development
13.
Bull Environ Contam Toxicol ; 96(5): 650-6, 2016 May.
Article in English | MEDLINE | ID: mdl-27003805

ABSTRACT

The moss-bag transplant technique was used to investigate the kinetics of the accumulation of 38 elements in Sphagnum girgensohni moss samples in the highly polluted municipality of Baia Mare, Romania. The moss samples collected from the unpolluted Vitosha Mountain Natural Reserve, Bulgaria, were analyzed after 1, 2, 3, and 4 months of exposure, respectively. The ANOVA method was used to assay the statistical significance of the observed changes in elemental content, as determined by neutron activation analysis. The content of Zn, Se, As, Ag, Cd, and Sb increased steadily, while that of physiologically active K and Cl, as well as Rb and Cs, decreased exponentially. The study showed that an adequate application of the moss transplant technique in an urban environment should consider the exposure time as a critical parameter, since particular elements are depleted in the moss at sites with high atmospheric loading of metals.


Subject(s)
Environmental Pollutants/analysis , Sphagnopsida/chemistry , Arsenic/analysis , Cities , Environmental Monitoring/methods , Industry , Metals/analysis , Neutron Activation Analysis , Romania , Time Factors
14.
J Environ Sci (China) ; 41: 128-137, 2016 Mar.
Article in English | MEDLINE | ID: mdl-26969058

ABSTRACT

This is the first study seasonally applying Sphagnum papillosum moss bags and vertical snow samples for monitoring atmospheric pollution. Moss bags, exposed in January, were collected together with snow samples by early March 2012 near the Harjavalta Industrial Park in southwest Finland. Magnetic, chemical, scanning electron microscopy-energy dispersive X-ray spectroscopy (SEM-EDX), K-means clustering, and Tomlinson pollution load index (PLI) data showed parallel spatial trends of pollution dispersal for both materials. Results strengthen previous findings that concentrate and slag handling activities were important (dust) emission sources while the impact from Cu-Ni smelter's pipe remained secondary at closer distances. Statistically significant correlations existed between the variables of snow and moss bags. As a summary, both methods work well for sampling and are efficient pollutant accumulators. Moss bags can be used also in winter conditions and they provide more homogeneous and better controlled sampling method than snow samples.


Subject(s)
Air Pollutants/analysis , Environmental Monitoring/methods , Seasons , Snow/chemistry , Sphagnopsida/chemistry , Finland
15.
Appl Environ Microbiol ; 81(18): 6333-44, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26150465

ABSTRACT

Northern wetlands make up a substantial terrestrial carbon sink and are often dominated by decay-resistant Sphagnum mosses. Recent studies have shown that planctomycetes appear to be involved in degradation of Sphagnum-derived debris. Novel trimethylornithine (TMO) lipids have recently been characterized as abundant lipids in various Sphagnum wetland planctomycete isolates, but their occurrence in the environment has not yet been confirmed. We applied a combined intact polar lipid (IPL) and molecular analysis of peat cores collected from two northern wetlands (Saxnäs Mosse [Sweden] and Obukhovskoye [Russia]) in order to investigate the preferred niche and abundance of TMO-producing planctomycetes. TMOs were present throughout the profiles of Sphagnum bogs, but their concentration peaked at the oxic/anoxic interface, which coincided with a maximum abundance of planctomycete-specific 16S rRNA gene sequences. The sequences detected at the oxic/anoxic interface were affiliated with the Isosphaera group, while sequences present in the anoxic peat layers were related to an uncultured planctomycete group. Pyrosequencing-based analysis identified Planctomycetes as the major bacterial group at the oxic/anoxic interface at the Obukhovskoye peat (54% of total 16S rRNA gene sequence reads), followed by Acidobacteria (19% reads), while in the Saxnäs Mosse peat, Acidobacteria were dominant (46%), and Planctomycetes contributed to 6% of the total reads. The detection of abundant TMO lipids in planctomycetes isolated from peat bogs and the lack of TMO production by cultures of acidobacteria suggest that planctomycetes are the producers of TMOs in peat bogs. The higher accumulation of TMOs at the oxic/anoxic interface and the change in the planctomycete community with depth suggest that these IPLs could be synthesized as a response to changing redox conditions at the oxic/anoxic interface.


Subject(s)
Bacteria/chemistry , Bacteria/isolation & purification , Lipids/analysis , Soil Microbiology , Sphagnopsida/microbiology , Wetlands , Acidobacteria/chemistry , Acidobacteria/isolation & purification , Bacteria/genetics , High-Throughput Nucleotide Sequencing , In Situ Hybridization, Fluorescence , Lipids/chemistry , Oxidation-Reduction , Phylogeny , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Russia , Soil/chemistry , Sphagnopsida/chemistry , Sphagnopsida/genetics , Sweden
16.
Glycobiology ; 24(10): 945-55, 2014 Oct.
Article in English | MEDLINE | ID: mdl-24907709

ABSTRACT

Tri-N-acetylchitotriosyl moranoline, (GlcNAc)3-M, was previously shown to strongly inhibit lysozyme (Ogata M, Umemoto N, Ohnuma T, Numata T, Suzuki A, Usui T, Fukamizo T. 2013. A novel transition-state analogue for lysozyme, 4-O-ß-tri-Nacetylchitotriosyl moranoline, provided evidence supporting the covalent glycosyl-enzyme intermediate. J Biol Chem. 288:6072-6082). The findings prompted us to examine the interaction of di-N-acetylchitobiosyl moranoline, (GlcNAc)2-M, with a family GH19 chitinase from moss, Bryum coronatum (BcChi19A). Thermal unfolding experiments using BcChi19A and the catalytic acid-deficient mutant (BcChi19A-E61A) revealed that the transition temperature (Tm) was elevated by 4.3 and 5.8°C, respectively, upon the addition of (GlcNAc)2-M, while the chitin dimer, (GlcNAc)2, elevated Tm only by 1.0 and 1.4°C, respectively. By means of isothermal titration calorimetry, binding free energy changes for the interactions of (GlcNAc)3 and (GlcNAc)2-M with BcChi19A-E61A were determined to be -5.2 and -6.6 kcal/mol, respectively, while (GlcNAc)2 was found to interact with BcChi19A-E61A with markedly lower affinity. nuclear magnetic resonance titration experiments using (15)N-labeled BcChi19A and BcChi19A-E61A revealed that both (GlcNAc)2 and (GlcNAc)2-M interact with the region surrounding the catalytic center of the enzyme and that the interaction of (GlcNAc)2-M is markedly stronger than that of (GlcNAc)2 for both enzymes. However, (GlcNAc)2-M was found to moderately inhibit the hydrolytic reaction of chitin oligosaccharides catalyzed by BcChi19A (IC50 = 130-620 µM). A molecular dynamics simulation of BcChi19A in complex with (GlcNAc)2-M revealed that the complex is quite stable and the binding mode does not significantly change during the simulation. The moranoline moiety of (GlcNAc)2-M did not fit into the catalytic cleft (subsite -1) but was rather in contact with subsite +1. This situation may result in the moderate inhibition toward the BcChi19A-catalyzed hydrolysis.


Subject(s)
1-Deoxynojirimycin/metabolism , Chitinases/metabolism , Disaccharides/metabolism , 1-Deoxynojirimycin/chemistry , Calorimetry , Catalytic Domain , Chitin/chemistry , Chitin/metabolism , Chitinases/chemistry , Disaccharides/chemistry , Hydrolysis , Magnetic Resonance Spectroscopy , Muramidase/antagonists & inhibitors , Muramidase/chemistry , Protein Binding , Sphagnopsida/chemistry
17.
Environ Sci Technol ; 48(21): 12603-11, 2014 Nov 04.
Article in English | MEDLINE | ID: mdl-25259407

ABSTRACT

Sphagnum moss was collected from 21 ombrotrophic (rain-fed) peat bogs surrounding open pit mines and upgrading facilities of Athabasca bituminous sands in Alberta (AB). In comparison to contemporary Sphagnum moss from four bogs in rural locations of southern Germany (DE), the AB mosses yielded lower concentrations of Ag, Cd, Ni, Pb, Sb, and Tl, similar concentrations of Mo, but greater concentrations of Ba, Th, and V. Except for V, in comparison to the "cleanest", ancient peat samples ever tested from the northern hemisphere (ca. 6000-9000 years old), the concentrations of each of these metals in the AB mosses are within a factor of 3 of "natural, background" values. The concentrations of "heavy metals" in the mosses, however, are proportional to the concentration of Th (a conservative, lithophile element) and, therefore, contributed to the plants primarily in the form of mineral dust particles. Vanadium, the single most abundant trace metal in bitumen, is the only anomaly: in the AB mosses, V exceeds that of ancient peat by a factor of 6; it is therefore enriched in the mosses, relative to Th, by a factor of 2. In comparison to the surface layer of peat cores collected in recent years from across Canada, from British Columbia to New Brunswick, the Pb concentrations in the mosses from AB are far lower.


Subject(s)
Environmental Pollutants/analysis , Metals, Heavy/analysis , Sphagnopsida/chemistry , Alberta , British Columbia , Environmental Monitoring , Germany , Mining , New Brunswick , Soil , Wetlands
18.
Ecotoxicol Environ Saf ; 107: 229-35, 2014 Sep.
Article in English | MEDLINE | ID: mdl-25011119

ABSTRACT

In this work, Taguchi L32 experimental design was applied to optimize biosorption of Cu(2+) ions by an easily available biosorbent, Spaghnum moss. With this aim, batch biosorption tests were performed to achieve targeted experimental design with five factors (concentration, pH, biosorbent dosage, temperature and agitation time) at two different levels. Optimal experimental conditions were determined by calculated signal-to-noise ratios. "Higher is better" approach was followed to calculate signal-to-noise ratios as it was aimed to obtain high metal removal efficiencies. The impact ratios of factors were determined by the model. Within the study, Cu(2+) biosorption efficiencies were also predicted by using Taguchi method. Results of the model showed that experimental and predicted values were close to each other demonstrating the success of Taguchi approach. Furthermore, thermodynamic, isotherm and kinetic studies were performed to explain the biosorption mechanism. Calculated thermodynamic parameters were in good accordance with the results of Taguchi model.


Subject(s)
Copper/chemistry , Sphagnopsida/chemistry , Water Pollutants, Chemical/chemistry , Adsorption , Kinetics , Models, Theoretical , Temperature , Thermodynamics
19.
Sci Total Environ ; 934: 173021, 2024 Jul 15.
Article in English | MEDLINE | ID: mdl-38740203

ABSTRACT

Persistent organic pollutants (POPs) pose a significant global threat to human health and the environment, and require continuous monitoring due to their ability to migrate long distances. Active biomonitoring using cloned mosses is an inexpensive but underexplored method to assess POPs, mainly due to the poor understanding of the loading mechanisms of these pollutants in mosses. In this work, Fontinalis antipyretica (aquatic moss) and Sphagnum palustre (terrestrial moss) were evaluated as potential biomonitors of hexachlorocyclohexanes (HCHs: α-, ß-, γ-, δ-HCH), crucial POPs. Moss clones, grown in photobioreactors and subsequently oven-dried, were used. Their lipid composition and distribution were characterized through molecular and histochemical studies. Adsorption experiments were carried out in the aqueous phase using the repeated additions method and in the gas phase using an active air sampling technique based on solid-phase extraction, a pioneering approach in moss research. F. antipyretica exhibited greater lipid content in the walls of most cells and higher adsorption capacity for all HCH isomers in both gaseous and liquid environments. These findings highlight the need for further investigation of POP loading mechanisms in mosses and open the door to explore other species based on their lipid content.


Subject(s)
Environmental Monitoring , Hexachlorocyclohexane , Hexachlorocyclohexane/analysis , Environmental Monitoring/methods , Adsorption , Bryophyta/chemistry , Environmental Pollutants/analysis , Biological Monitoring/methods , Sphagnopsida/chemistry
20.
Sci Rep ; 13(1): 7971, 2023 05 17.
Article in English | MEDLINE | ID: mdl-37198446

ABSTRACT

Peatlands in southern South America (Tierra del Fuego region, TdF) play a key role in the ecological dynamics of Patagonia. It is, therefore, necessary to increase our knowledge and awareness of their scientific and ecological value to ensure their conservation. This study aimed to assess the differences in the distribution and accumulation of elements in peat deposits and Sphagnum moss from the TdF. Chemical and morphological characterization of the samples was carried out using various analytical techniques, and total levels of 53 elements were determined. Furthermore, a chemometric differentiation based on the elemental content of peat and moss samples was performed. Some elements (Cs, Hf, K, Li, Mn, Na, Pb, Rb, Si, Sn, Ti and Zn) showed significantly higher contents in moss samples than in peat samples. In contrast, only Mo, S and Zr were significantly higher in peat samples than in moss samples. The results obtained highlight the ability of moss to accumulate elements and to act as a means to facilitate the entry of elements into peat samples. The valuable data obtained in this multi-methodological baseline survey can be used for more effective conservation of biodiversity and preservation of the ecosystem services of the TdF.


Subject(s)
Bryophyta , Sphagnopsida , Ecosystem , Carbon Sequestration , Environmental Monitoring/methods , Sphagnopsida/chemistry , Soil , Carbon
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