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1.
An Acad Bras Cienc ; 91(suppl 2): e20181290, 2019 Sep 02.
Article in English | MEDLINE | ID: mdl-31482940

ABSTRACT

Abstract: Riostegotherium yanei from the Itaboraí Basin, Brazil, is the oldest known Xenarthra. This paper aims to describe the internal morphology of the osteoderms of Riostegotherium yanei from the perspective of histology and micro-CT approaches, expanding the available data on cingulate osteoderm microstructure. Seven osteoderms of R. yanei were used for the internal microstructure description and eight of Dasypus novemcinctus for comparison. The osteoderms of Riostegotherium yanei lacks the diploë-like structure typical of glyptodonts but has a three-layered structure composed of two layers of non-Haversian compact bone enclosing a central layer of primary and secondary osteons. This internal organization is distinct from other Astegotheriini of comparable age, but similar to Dasypus. The 3D reconstruction of Riostegotherium yanei revealed two patterns of internal organization. Pattern 1 of movable osteoderm is composed of large remodeled areas at the base and a more compact bone at the tongue; in Pattern 2 (both movable and buckler), the internal cavities are much smaller, more numerous, and more interconnected to each other. In one buckler osteoderm, the cavities are organized somewhat radially with a compact central region (Pattern 1). Pattern 1 of both movable and buckler osteoderms resemble that of Dasypus.


Subject(s)
Bone and Bones/anatomy & histology , Fossils , Xenarthra/anatomy & histology , Animals , Brazil , Xenarthra/classification
2.
An Acad Bras Cienc ; 91Suppl 2(Suppl 2): e20170390, 2019.
Article in English | MEDLINE | ID: mdl-29668794

ABSTRACT

The Mylodontidae Scelidotheriinae (Mammalia, Xenarthra, Tardigrada) are a diversified clade of South American fossil ground sloths, with a wide geographic distribution, especially in high and middle latitudes. According to the last revision, the Quaternary diversity includes the genera Scelidotherium, Catonyx, and Valgipes. The clade Scelidotheriinae is well represented in the Pleistocene of the Tarija-Padcaya basin, and the first mention of these ground sloths correspond to the middle of the XIX Century. Since then, several species (i.e., Scelidotherium tarijensis, Scelidodon tarijensis, Scelidotherium capellini) have been reported as inhabiting the Tarija-Padcaya basin during the Pleistocene. Despite the abundance of fossil records of Scelidotheriinae in this area, no modern taxonomic revisions are available. In consequence, in this contribution a revision of the remains assigned to Scelidotheriinae from the Tarija-Padcaya basin is accomplished, and some biostratigraphic and geographic implications are discussed. Our results show that one single species (Catonyx tarijensis) can be recognized in the studied area, whereas a supposed smaller one (Scelidotherium patrium) actually corresponds to juvenile specimens of C. tarijensis.


Subject(s)
Fossils , Mammals/anatomy & histology , Tardigrada/anatomy & histology , Xenarthra/anatomy & histology , Animals , Bolivia , Mammals/classification , Paleontology , Tardigrada/classification , Xenarthra/classification
3.
Proc Biol Sci ; 285(1878)2018 05 16.
Article in English | MEDLINE | ID: mdl-29769358

ABSTRACT

Mylodon darwinii is the extinct giant ground sloth named after Charles Darwin, who first collected its remains in South America. We have successfully obtained a high-quality mitochondrial genome at 99-fold coverage using an Illumina shotgun sequencing of a 12 880-year-old bone fragment from Mylodon Cave in Chile. Low level of DNA damage showed that this sample was exceptionally well preserved for an ancient subfossil, probably the result of the dry and cold conditions prevailing within the cave. Accordingly, taxonomic assessment of our shotgun metagenomic data showed a very high percentage of endogenous DNA with 22% of the assembled metagenomic contigs assigned to Xenarthra. Additionally, we enriched over 15 kb of sequence data from seven nuclear exons, using target sequence capture designed against a wide xenarthran dataset. Phylogenetic and dating analyses of the mitogenomic dataset including all extant species of xenarthrans and the assembled nuclear supermatrix unambiguously place Mylodon darwinii as the sister-group of modern two-fingered sloths, from which it diverged around 22 million years ago. These congruent results from both the mitochondrial and nuclear data support the diphyly of the two modern sloth lineages, implying the convergent evolution of their unique suspensory behaviour as an adaption to arboreality. Our results offer promising perspectives for whole-genome sequencing of this emblematic extinct taxon.


Subject(s)
DNA, Ancient/analysis , Genome, Mitochondrial , Xenarthra/classification , Animals , Chile , DNA, Mitochondrial/analysis , Exons/genetics , Fossils , Phylogeny , Sloths/classification , Sloths/genetics , Xenarthra/genetics
4.
Naturwissenschaften ; 105(3-4): 28, 2018 Mar 27.
Article in English | MEDLINE | ID: mdl-29589123

ABSTRACT

Several detailed studies of the external morphology of the ear region in extinct sloths have been published in the past few decades, and this anatomical region has proved extremely helpful in elucidating the phylogenetic relationships among the members of this mammalian clade. Few studies of the inner ear anatomy in these peculiar animals were conducted historically, but these are increasing in number in recent years, in both the extinct and extant representatives, due to wider access to CT-scanning facilities, which allow non-destructive access to internal morphologies. In the present study, we analyze the extinct ground sloth Glossotherium robustum and provide a description of the external features of the ear region and the endocranial side of the petrosal bone, coupled with the first data on the anatomy of the bony labyrinth. Some features observable in the ear region of G. robustum (e.g., the shape and size of the entotympanic bone and the morphology of the posteromedial surface of the petrosal) are highly variable, both intraspecifically and intraindividually. The form of the bony labyrinth of G. robustum is also described, providing the first data from this anatomical region for the family Mylodontidae. The anatomy of the bony labyrinth of the genus Glossotherium is here compared at the level of the superorder Xenarthra, including all available extant and extinct representatives, using geometric morphometric methods. In light of the new data, we discuss the evolution of inner ear anatomy in the xenarthran clade, and most particularly in sloths, considering the influence of phylogeny, allometry, and physiology on the shape of this highly informative region of the skull. These analyses show that the inner ear of Glossotherium more closely resembles that of the extant anteaters, and to a lesser extent those of the giant ground sloth Megatherium and euphractine armadillos, than those of the extant sloths Bradypus and Choloepus, further demonstrating the striking morphological convergence between the two extant sloth genera.


Subject(s)
Ear/anatomy & histology , Fossils , Phylogeny , Xenarthra/anatomy & histology , Xenarthra/classification , Animals , Argentina
5.
J Hered ; 109(4): 347-359, 2018 05 11.
Article in English | MEDLINE | ID: mdl-29140441

ABSTRACT

Pangolins, considered the most-trafficked mammals on Earth, are rapidly heading to extinction. Eight extant species of these African and Asian scale-bodied anteaters are commonly recognized, but their evolutionary relationships remain largely unexplored. Here, we present the most comprehensive phylogenetic assessment of pangolins, based on genetic variation of complete mitogenomes and 9 nuclear genes. We confirm deep divergence among Asian and African pangolins occurring not later than the Oligocene-Miocene boundary ca. 23 million years ago (Ma) (95% HPD = 18.7-27.2), limited fossil evidence suggesting dispersals from Europe. We recognize 3 genera including Manis (Asian pangolins), Smutsia (large African pangolins), and Phataginus (small African pangolins), which first diversified in the Middle-Upper Miocene (9.8-13.3 Ma) through a period of gradual cooling coinciding with a worldwide taxonomic diversification among mammals. Based on large mitogenomic distances among the 3 genera (18.3-22.8%) and numerous (18) morphological traits unique to Phataginus, we propose the subfamily Phatagininae subfam. nov. to designate small African pangolins. In contrast with the morphological-based literature, our results establish that the thick-tailed pangolin (Manis crassicaudata) is sister-species of the Sunda (Manis javanica) and Palawan (Manis culionensis) pangolins. Mitogenomic phylogenetic delineations supported additional pangolin species subdivisions (n = 13), including 6 African common pangolin (Phataginus tricuspis) lineages, but these patterns were not fully supported by our multi-locus approach. Finally, we identified more than 5000 informative mitogenomic sites and diagnostic variation from 5 nuclear genes among all species and lineages of pangolins, providing an important resource for further research and for effectively tracing the worldwide pangolin trade.


Subject(s)
Genetic Variation , Genome/genetics , Xenarthra/genetics , Africa , Animals , Asia , Biological Evolution , Cell Nucleus/genetics , Endangered Species , Genome, Mitochondrial/genetics , Mammals/anatomy & histology , Mammals/classification , Mammals/genetics , Phylogeny , Xenarthra/anatomy & histology , Xenarthra/classification
6.
Mol Biol Evol ; 33(3): 621-42, 2016 Mar.
Article in English | MEDLINE | ID: mdl-26556496

ABSTRACT

Xenarthra (armadillos, sloths, and anteaters) constitutes one of the four major clades of placental mammals. Despite their phylogenetic distinctiveness in mammals, a reference phylogeny is still lacking for the 31 described species. Here we used Illumina shotgun sequencing to assemble 33 new complete mitochondrial genomes, establishing Xenarthra as the first major placental clade to be fully sequenced at the species level for mitogenomes. The resulting data set allowed the reconstruction of a robust phylogenetic framework and timescale that are consistent with previous studies conducted at the genus level using nuclear genes. Incorporating the full species diversity of extant xenarthrans points to a number of inconsistencies in xenarthran systematics and species definition. We propose to split armadillos into two distinct families Dasypodidae (dasypodines) and Chlamyphoridae (euphractines, chlamyphorines, and tolypeutines) to better reflect their ancient divergence, estimated around 42 Ma. Species delimitation within long-nosed armadillos (genus Dasypus) appeared more complex than anticipated, with the discovery of a divergent lineage in French Guiana. Diversification analyses showed Xenarthra to be an ancient clade with a constant diversification rate through time with a species turnover driven by high but constant extinction. We also detected a significant negative correlation between speciation rate and past temperature fluctuations with an increase in speciation rate corresponding to the general cooling observed during the last 15 My. Biogeographic reconstructions identified the tropical rainforest biome of Amazonia and the Guiana Shield as the cradle of xenarthran evolutionary history with subsequent dispersions into more open and dry habitats.


Subject(s)
Evolution, Molecular , Genome, Mitochondrial , Genomics , Phylogeny , Xenarthra/classification , Xenarthra/genetics , Animals , Bayes Theorem , Biological Evolution , Computational Biology , High-Throughput Nucleotide Sequencing
7.
An Acad Bras Cienc ; 88(2): 809-27, 2016 Jun 07.
Article in English | MEDLINE | ID: mdl-27276376

ABSTRACT

A large diversity of Glyptodontidae has been proposed as characterizing the Chapadmalalan Age (Pliocene). Most of these taxa were recognized on the basis of partial dorsal carapaces and/or caudal tubes, whereas the main diagnostic characteristic is a particular morphology of the exposed surface of the osteoderms. From a biostratigraphic point of view some species are biostratigraphically important. The Upper Chapadmalalan is based on the Paraglyptodon chapadmalensis biozone. Both the re-evaluation of the type and referred materials and new significant findings from the Chapadmalal and El Polvorín Formations indicate that the diversity of Pliocene Glyptodontidae is more limited than previously supposed. The particular morphology of the exposed surface of the osteoderms that characterizes some of the species actually corresponds to a taphonomic alteration, which results in a non-real ornamentation pattern. Thus, the Glyptodontinae P. chapadmalensis must be replaced as a fossil guide because neither this species nor the species included in the genera Urotherium, Trachycalyptus and Lomaphorus are well characterized. Taking into account the diversity of Glyptodontidae for this lapse, the Glyptodontinae are very scarce (a situation that contrasts with its records in the Pleistocene), whereas Eosclerocalyptus, "Plohophorini" (Plohophorus) and Doedicurinae (cf. Eleutherocercus antiquus) are among the most recorded taxa.


Subject(s)
Fossils , Xenarthra/classification , Animals , Argentina , Xenarthra/anatomy & histology
8.
An Acad Bras Cienc ; 87(1): 15-27, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25806977

ABSTRACT

The genus Panochthus represents the last lineage of "Panochthini" recorded in the Pleistocene. This genus has a wide latitudinal distribution in South America, and in Brazil it occurs in the southern and northeastern regions. In this paper we describe new material (isolated osteoderms and caudal tube fragments) assigned to Panochthus from the state of Rio Grande do Sul (southern Brazil) and discuss some taxonomic issues related to Panochthus tuberculatus and Panochthus greslebini based on this material . The occurrence of P. greslebini is the first for outside the Brazilian Intertropical Region. In addition, we describe new diagnostic features to differentiate the osteoderms of P. greslebini and P. tuberculatus. Unfortunately, it was not possible to identify some osteoderms at the species level. Interestingly, they showed four distinct morphotypes characterized by their external morphology, and thus were attributed to Panochthus sp. Lastly, we conclude that in addition to P.tuberculatus registered to southern Brazil, there is another species of the genus, assignable to P. cf. P. greslebini. Our analysis reinforce the reliability of caudal tube characters for the classification of species of Panochthus.


Subject(s)
Fossils , Xenarthra/classification , Animals , Brazil , Paleontology , Xenarthra/anatomy & histology
9.
Mol Biol Evol ; 30(9): 1999-2000, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23813980

ABSTRACT

Untangling the root of the evolutionary tree of placental mammals has been nearly an impossible task. The good news is that only three possibilities are seriously considered. The bad news is that all three possibilities are seriously considered. Paleontologists favor a root anchored by Xenarthra (e.g., sloths and anteater), whereas molecular evolutionists have favored the two other possible roots: Afrotheria (e.g., elephants, hyraxes, and tenrecs) and Atlantogenata (Afrotheria + Xenarthra). Now, two groups of researchers have scrutinized the largest available genomic data sets bearing on the question and have come to opposite conclusions, as reported in this issue of Molecular Biology and Evolution. Needless to say, more research is needed.


Subject(s)
Elephants/classification , Genome , Mammals/classification , Phylogeny , Xenarthra/classification , Africa , Animals , Biological Evolution , Elephants/genetics , Female , Mammals/genetics , Phylogeography , Placenta/physiology , Pregnancy , South America , Xenarthra/genetics
10.
An Acad Bras Cienc ; 86(1): 147-58, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24519005

ABSTRACT

This paper deals with xenarthrans osteoderms assigned to Dasypus aff. D. novemcinctus, Euphractus sexcinctus and Cabassous sp. The material was collected in subsurface, from 0.10 to 0.60 m in the Urso Fóssil Cave, Parque Nacional de Ubajara, State of Ceará, northeastern Brazil. The ages of sediment samples from levels 4 and 5 (depths of 0.40 and 0.50 m) were determined by thermoluminescence technique, and indicated ages of 8,000 and 8,200 years BP for each layer respectively. The presence in these layers of early Holocene xenarthrans taxa can contribute to the understanding of the biotic evolution of the northwest region of Ceará during the last 10,000 years. Two of the three identified taxa still occur in the region: Dasypus novemcinctus and Euphractus sexcinctus. The Dasypodidae fauna here reported includes animals with generalist feeding habits and current wide geographical distribution. It is suggested, therefore, that the climatic and environmental conditions in the early Holocene were very similar the actual ones, and that the absence of Cabassous may be conditioned to other factors, such as anthropogenic action and loss of habitat by fragmentation of the vegetation.


Subject(s)
Fossils , Xenarthra/classification , Animals , Brazil , Paleontology
11.
Zootaxa ; 3721: 387-98, 2013.
Article in English | MEDLINE | ID: mdl-26120683

ABSTRACT

Among South American Quaternary Glyptodontidae (Mammalia, Cingulata), Neosclerocalyptus Paula Couto represents one of the best known genera. Prior to this contribution, four species were recognized. N. pseudornatus (Ameghino) and N. ornatus (Owen) (Ensenadan Age/Stage, early-middle Pleistocene); N. gouldi Zurita (Bonaerian Age/Stage, middle Pleistocene-late Pleistocene), and N. paskoensis (Zurita) (Lujanian Age/Stage, late Pleistocene-early Holocene). One of the most notable characters of the species of the genus is a modified area located in the distal part of the nasals, recently interpreted as a neomorphic structure derived from the ossification of the nasal cartilages. In this contribution, a new species of Neosclerocalyptus (N. castellanosi sp. nov.), which in turn represents the oldest record of the genus, is presented and described. In addition, a cladistic analysis is carried out to test the monophyly of Neosclerocalyptus and the phylogenetic position of this new species. The material comes from Vorohuean (late Pliocene) levels in the surroundings of Mar del Plata, Buenos Aires Province, Argentina. Among other morphological characters, this new species has ossified nasal cartilages restricted to the latero-dorsal area of the nasals, whereas in the remaining species these structures are more expanded and both sides contact in the midline of the skull. In turn, the phylogenetic analysis confirmed the monophyly of Neosclerocalyptus, whereas N. castellanosi sp. nov. appears closely related to N. pseudornatus, being N. ornatus the sister taxa of this clade. On the other hand, N. gouldi + N. paskoensis constitute the other clade. The clade constituted by Hoplophorus euphractus Lund + Panochthus intermedius Lydekker constitutes the sister taxa of Neosclerocalyptus.


Subject(s)
Xenarthra/classification , Animals , Argentina , Head/anatomy & histology , Head/growth & development , Museums , Phylogeny , Xenarthra/anatomy & histology , Xenarthra/genetics , Xenarthra/growth & development
12.
Cytogenet Genome Res ; 137(2-4): 130-43, 2012.
Article in English | MEDLINE | ID: mdl-22678153

ABSTRACT

The Magnaorder Xenarthra is one of the four main supraordinal eutherian clades, together with Afrotheria, Euarchontoglires and Laurasiatheria. Xenarthra is an eminently Central and South American group of special interest in phylogenetic studies due to its possible position at the base of the eutherian tree. The use of modern cytogenetic techniques in some species of Xenarthra has provided important insights into the karyotypic evolution of mammals. Nevertheless, chromosome analyses in the group are still restricted, with only a few individuals of each species studied and karyotype descriptions mostly without banding patterns. In addition, it is likely that still unknown species exist and that the chromosome variability in the group is underestimated. We present a review of the currently available data on Xenarthra chromosomes and genomes and on the impact that their study has had in the understanding of mammalian genome evolution. It is clear that further cytogenetic analyses in Xenarthra, including banding patterns and molecular approaches, are likely to help in the identification of new species, reveal still undetected chromosome variations, provide information to support conservation strategies planning, and greatly contribute to a better understanding of mammalian genome evolution.


Subject(s)
Evolution, Molecular , Xenarthra/genetics , Animals , Chromosome Painting , Chromosomes, Mammalian/genetics , Cytogenetic Analysis , Female , Fossils , Humans , Karyotyping , Male , Models, Genetic , Phylogeny , Repetitive Sequences, Nucleic Acid , Xenarthra/classification
13.
Cytogenet Genome Res ; 137(2-4): 144-53, 2012.
Article in English | MEDLINE | ID: mdl-22868637

ABSTRACT

Afrotheria is the clade of placental mammals that, together with Xenarthra, Euarchontoglires and Laurasiatheria, represents 1 of the 4 main recognized supraordinal eutherian clades. It reunites 6 orders of African origin: Proboscidea, Sirenia, Hyracoidea, Macroscelidea, Afrosoricida and Tubulidentata. The apparently unlikely relationship among such disparate morphological taxa and their possible basal position at the base of the eutherian phylogenetic tree led to a great deal of attention and research on the group. The use of biomolecular data was pivotal in Afrotheria studies, as they were the basis for the recognition of this clade. Although morphological evidence is still scarce, a plethora of molecular data firmly attests to the phylogenetic relationship among these mammals of African origin. Modern cytogenetic techniques also gave a significant contribution to the study of Afrotheria, revealing chromosome signatures for the group as a whole, as well as for some of its internal relationships. The associations of human chromosomes HSA1/19 and 5/21 were found to be chromosome signatures for the group and provided further support for Afrotheria. Additional chromosome synapomorphies were also identified linking elephants and manatees in Tethytheria (the associations HSA2/3, 3/13, 8/22, 18/19 and the lack of HSA4/8) and elephant shrews with the aardvark (HSA2/8, 3/20 and 10/17). Herein, we review the current knowledge on Afrotheria chromosomes and genome evolution. The already available data on the group suggests that further work on this apparently bizarre assemblage of mammals will provide important data to a better understanding on mammalian genome evolution.


Subject(s)
Chromosomes, Mammalian/genetics , Evolution, Molecular , Mammals/classification , Mammals/genetics , Africa , Animals , Chromosome Banding , Cytogenetic Analysis , Diploidy , Female , Humans , Hyraxes/classification , Hyraxes/genetics , Male , Phylogeny , Proboscidea Mammal/classification , Proboscidea Mammal/genetics , Sirenia/classification , Sirenia/genetics , Xenarthra/classification , Xenarthra/genetics
14.
Zootaxa ; 4950(3): zootaxa.4950.3.12, 2021 Mar 31.
Article in English | MEDLINE | ID: mdl-33903435

ABSTRACT

La Pampa province is divided into two clearly distinguishable fractions: a small northeastern humid sector corresponding to the Pampas ecoregion and a drier western sector, represented by the Monte de Llanuras y Mesetas (termed Monte region in this paper) and Espinal ecoregions (sensu Brown et al. 2006). These three ecoregions are visibly distinguishable from an edaphological and phytogeographic point of view, while the mammalian fauna composition is homogeneous. The study area was located in the central part of the province, comprising the Monte and Espinal ecoregions (Fig. 1). In that area three species of armadillos are recorded (Soibelzon et al. 2015). Two of these (Zaedyus pichiy Desmarest, 1804 and Chaetophractus villosus Desmarest, 1804) (Xenarthra: Chlamyphoridae) are the most common and widely distributed armadillos both in the province and in the country, while the third species, Chlamyphorus truncatus Harlan, 1825, has a more restricted distribution and is one of the most cryptic and least known armadillos in the country. For this reason, in our fieldwork ectoparasites were obtained only from the first two species mentioned.


Subject(s)
Xenarthra , Animals , Argentina , Armadillos , Siphonaptera , Ticks , Xenarthra/classification , Xenarthra/physiology
15.
Mitochondrial DNA A DNA Mapp Seq Anal ; 29(8): 1276-1283, 2018 12.
Article in English | MEDLINE | ID: mdl-29540087

ABSTRACT

Pangolins are a group of eight endangered mammalian species included in the family Manidae (Order Pholidota) and divided into four each African (Arboreal species; Phataginus tetradactyla, Phataginus tricuspis, Ground dwelling species; Smutsia gigantea and Smutsia temminckii) and Asian (Ground dwelling; Manis crassicaudata, Manis pentadactyla, Manis javanica and Manis culionensis) species. The taxonomy of all the eight extant pangolin species based on molecular genetics studies, remains unresolved and poorly examined. The present study is to address this lacuna by studying the phylogenetic, taxonomic status and molecular dating of Indian pangolin with other six out of eight extant pangolins (Sunda pangolin possibly extinct) based on complete coding region of mitochondrial cytochrome b gene. Overall sequences divergence among pangolins ranged between 0.01 ± 0.01 and 0.26 ± 0.03, where within 'Manis' it ranged between 0.01 ± 0.01 and 0.14 ± 0.03. Cytochrome b sequences based phylogenetic tree revealed, the division of seven pangolin species into two paraphyletic clades of African and Asian species, further these two paraphyletic clades were divided into three well-supported monophyletic clades, first for the genus 'Smutsia' with two African ground pangolins, second for the genus 'Phataginus' with two African arboreal pangolins and third for 'Manis' with three Asian species. Within clade of 'Manis', Chinese pangolin and Malayan pangolin are basal where Indian pangolin is present as a sister clade and furthermore, molecular dating analysis suggested that pangolins diverged from Carnivora at ∼87.2 MYA, followed by the split of Asian pangolins and African pangolins at ∼36.1 MYA and Indian pangolin split from Chinese pangolin and Malayan pangolin at ∼16.7 MYA.


Subject(s)
Cytochromes b/genetics , Evolution, Molecular , Phylogeny , Xenarthra/genetics , Animals , Xenarthra/classification
16.
J Morphol ; 279(10): 1455-1467, 2018 10.
Article in English | MEDLINE | ID: mdl-30105869

ABSTRACT

The relationship between humerus shape and the modes of exploring substrate among extinct and extant Pilosa (especially anteaters and ground sloths) were investigated here. We used geometric morphometrics and discriminant analyses to relate morphological patterns and their possible ecological categories. Our results suggest that plesiomorphic taxa such as Nothrotheriidae, most Megalonychidae and basal Megatheriidae tend to have more slender humerus, associated to generalist habitus (climbing, swimming and digging activities), and while Mylodontidae developed specialized digging habitus. Additionally, we inferred ground sloths which inhabited the Brazilian territory during the Quaternary likely occupied at least four different niches. Mammals display morphofunctional adaptations on the limbs which are reflected on their modes of substrate exploration. Herein, we analyzed the humerus morphology of ground sloths and anteaters. Our results suggest that most of the Pleistocene Mylodonts were fossorial taxa, while most of the Santacrucian sloths plus extant anteaters were semiarboreal or semiaquatic taxa. The Pleistocene Megatheriidae should be ambulatory.


Subject(s)
Ecological and Environmental Phenomena , Humerus/anatomy & histology , Humerus/physiology , Paleontology , Xenarthra/anatomy & histology , Xenarthra/physiology , Animals , Brazil , Discriminant Analysis , Models, Anatomic , Multivariate Analysis , Phylogeny , Regression Analysis , Xenarthra/classification
17.
J Morphol ; 278(5): 704-717, 2017 05.
Article in English | MEDLINE | ID: mdl-28185320

ABSTRACT

The orientation of the semicircular canals of the inner ear in the skull of vertebrates is one of the determinants of the capacity of this system to detect a given rotational movement of the head. Past functional studies on the spatial orientation of the semicircular canals essentially focused on the lateral semicircular canal (LSC), which is supposedly held close to horizontal during rest and/or alert behaviors. However, they generally investigated this feature in only a few and distantly related taxa. Based on 3D-models reconstructed from µCT-scans of skulls, we examined the diversity of orientations of the LSC within one of the four major clades of placental mammals, that is, the superorder Xenarthra, with a data set that includes almost all extant genera and two extinct taxa. We observed a wide diversity of LSC orientations relative to the basicranium at both intraspecific and interspecific scales. The estimated phylogenetic imprint on the orientation of the LSC was significant but rather low within the superorder, though some phylogenetic conservatism was detected for armadillos that were characterized by a strongly tilted LSC. A convergence between extant suspensory sloths was also detected, both genera showing a weakly tilted LSC. Our preliminary analysis of usual head posture in extant xenarthrans based on photographs of living animals further revealed that the LSC orientation in armadillos is congruent with a strongly nose-down head posture. It also portrayed a more complex situation for sloths and anteaters. Finally, we also demonstrate that the conformation of the cranial vault and nuchal crests as well as the orientation of the posterior part of the petrosal may covary with the LSC orientation in Xenarthra. Possible inferences for the head postures of extinct xenarthrans such as giant ground sloths are discussed in the light of these results.


Subject(s)
Phylogeny , Semicircular Canals/anatomy & histology , Xenarthra/anatomy & histology , Animals , Head , Posture , Xenarthra/classification
18.
Mol Ecol Resour ; 16(4): 966-78, 2016 Jul.
Article in English | MEDLINE | ID: mdl-26946083

ABSTRACT

Restriction-enzyme-based sequencing methods enable the genotyping of thousands of single nucleotide polymorphism (SNP) loci in nonmodel organisms. However, in contrast to traditional genetic markers, genotyping error rates in SNPs derived from restriction-enzyme-based methods remain largely unknown. Here, we estimated genotyping error rates in SNPs genotyped with double digest RAD sequencing from Mendelian incompatibilities in known mother-offspring dyads of Hoffman's two-toed sloth (Choloepus hoffmanni) across a range of coverage and sequence quality criteria, for both reference-aligned and de novo-assembled data sets. Genotyping error rates were more sensitive to coverage than sequence quality and low coverage yielded high error rates, particularly in de novo-assembled data sets. For example, coverage ≥5 yielded median genotyping error rates of ≥0.03 and ≥0.11 in reference-aligned and de novo-assembled data sets, respectively. Genotyping error rates declined to ≤0.01 in reference-aligned data sets with a coverage ≥30, but remained ≥0.04 in the de novo-assembled data sets. We observed approximately 10- and 13-fold declines in the number of loci sampled in the reference-aligned and de novo-assembled data sets when coverage was increased from ≥5 to ≥30 at quality score ≥30, respectively. Finally, we assessed the effects of genotyping coverage on a common population genetic application, parentage assignments, and showed that the proportion of incorrectly assigned maternities was relatively high at low coverage. Overall, our results suggest that the trade-off between sample size and genotyping error rates be considered prior to building sequencing libraries, reporting genotyping error rates become standard practice, and that effects of genotyping errors on inference be evaluated in restriction-enzyme-based SNP studies.


Subject(s)
Diagnostic Errors , Genotyping Techniques/methods , Polymorphism, Single Nucleotide , Animals , DNA Restriction Enzymes/metabolism , High-Throughput Nucleotide Sequencing , Sequence Analysis, DNA , Xenarthra/classification , Xenarthra/genetics
19.
Zootaxa ; 3947(1): 30-48, 2015 Apr 14.
Article in English | MEDLINE | ID: mdl-25947717

ABSTRACT

The hairy long-nosed armadillo, currently referred as Dasypus (Cryptophractus) pilosus, is an enigmatic species endemic to montane cloud forests and subparamo of Peruvian Andes. Its strikingly different external features, which include the carapace concealed by abundant hair, the presence of more movable bands, and a slender skull, have raised questions regarding its taxonomic status as subgenus or as genus. This paper assesses this issue based on a cladistic study and provides a detailed comparative description of the species, including the first account on the distinctive ornamentation of its osteoderms. Based on several unique characters in the carapace, skull, mandible, and teeth, as well as on the external phylogenetic position relative to other Dasypus, we favor the assignment of the hairy long-nosed armadillo to other genus. As result, we revalidate the original generic epithet, so that the valid name of the species is Cryptophractus pilosus Fitzinger, 1856.


Subject(s)
Xenarthra/anatomy & histology , Xenarthra/classification , Animal Distribution , Animals , Ecosystem , Female , Male , Peru , Species Specificity , Xenarthra/physiology
20.
Proc Biol Sci ; 266(1417): 339-45, 1999 Feb 22.
Article in English | MEDLINE | ID: mdl-10097395

ABSTRACT

An outstanding problem in mammal phylogeny is the relationship of the aardvark (Orycteropus afer), the only living species of the order Tubulidentata, to the extant eutherian lineages. In order to examine this problem the complete mitochondrial DNA (mtDNA) molecule of the aardvark was sequenced and analysed. The aardvark tRNA-Ser (UCN) differs from that of other mammalian mtDNAs reported and appears to have reversed to the ancestral secondary structure of non-mammalian vertebrates and mitochondrial tRNAs in general. Phylogenetic analysis of 12 concatenated protein-coding genes (3325 amino acids) included the aardvark and 15 additional eutherians, two marsupials and a monotreme. The most strongly supported tree identified the aardvark as a sister group of a clade including the armadillo (Xenarthra) and the Cetferungulata (carnivores, perissodactyls, artiodactyls and cetaceans). By applying three molecular calibration points the divergence between the aardvark and armadillo-cetferungulates was estimated at ca. 90 million years before present.


Subject(s)
DNA, Mitochondrial/genetics , Phylogeny , Xenarthra/genetics , Animals , Base Sequence , Biological Evolution , Humans , Marsupialia/classification , Molecular Sequence Data , Platypus/classification , Polymerase Chain Reaction , Xenarthra/classification
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