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1.
Proc Natl Acad Sci U S A ; 118(12)2021 03 23.
Article in English | MEDLINE | ID: mdl-33723071

ABSTRACT

Small GTPases of the Ras-homology (Rho) family are conserved molecular switches that control fundamental cellular activities in eukaryotic cells. As such, they are targeted by numerous bacterial toxins and effector proteins, which have been intensively investigated regarding their biochemical activities and discrete target spectra; however, the molecular mechanism of target selectivity has remained largely elusive. Here we report a bacterial effector protein that selectively targets members of the Rac subfamily in the Rho family of small GTPases but none in the closely related Cdc42 or RhoA subfamilies. This exquisite target selectivity of the FIC domain AMP-transferase Bep1 from Bartonella rochalimae is based on electrostatic interactions with a subfamily-specific pair of residues in the nucleotide-binding G4 motif and the Rho insert helix. Residue substitutions at the identified positions in Cdc42 enable modification by Bep1, while corresponding Cdc42-like substitutions in Rac1 greatly diminish modification. Our study establishes a structural understanding of target selectivity toward Rac-subfamily GTPases and provides a highly selective tool for their functional analysis.


Subject(s)
Bacterial Proteins/metabolism , Membrane Proteins/metabolism , Protein Processing, Post-Translational , rac GTP-Binding Proteins/chemistry , rac GTP-Binding Proteins/metabolism , Amino Acid Sequence , Bartonella , Binding Sites , Models, Molecular , Multigene Family , Protein Binding , Protein Conformation , Structure-Activity Relationship , rac GTP-Binding Proteins/genetics
2.
J Biol Chem ; 295(34): 12130-12142, 2020 08 21.
Article in English | MEDLINE | ID: mdl-32636302

ABSTRACT

The RAS-related C3 botulinum toxin substrate 2 (RAC2) is a member of the RHO subclass of RAS superfamily GTPases required for proper immune function. An activating mutation in a key switch II region of RAC2 (RAC2E62K) involved in recognizing modulatory factors and effectors has been identified in patients with common variable immune deficiency. To better understand how the mutation dysregulates RAC2 function, we evaluated the structure and stability, guanine nucleotide exchange factor (GEF) and GTPase-activating protein (GAP) activity, and effector binding of RAC2E62K Our findings indicate the E62K mutation does not alter RAC2 structure or stability. However, it does alter GEF specificity, as RAC2E62K is activated by the DOCK GEF, DOCK2, but not by the Dbl homology GEF, TIAM1, both of which activate the parent protein. Our previous data further showed that the E62K mutation impairs GAP activity for RAC2E62K As this disease mutation is also found in RAS GTPases, we assessed GAP-stimulated GTP hydrolysis for KRAS and observed a similar impairment, suggesting that the mutation plays a conserved role in GAP activation. We also investigated whether the E62K mutation alters effector binding, as activated RAC2 binds effectors to transmit signaling through effector pathways. We find that RAC2E62K retains binding to an NADPH oxidase (NOX2) subunit, p67phox, and to the RAC-binding domain of p21-activated kinase, consistent with our earlier findings. Taken together, our findings indicate that the RAC2E62K mutation promotes immune dysfunction by promoting RAC2 hyperactivation, altering GEF specificity, and impairing GAP function yet retaining key effector interactions.


Subject(s)
Guanosine Triphosphate/chemistry , Mutation, Missense , rac GTP-Binding Proteins/chemistry , Amino Acid Substitution , Enzyme Activation , Guanosine Triphosphate/genetics , Guanosine Triphosphate/immunology , Humans , Hydrolysis , NADPH Oxidase 2/chemistry , NADPH Oxidase 2/genetics , NADPH Oxidase 2/immunology , Protein Domains , Proto-Oncogene Proteins p21(ras)/chemistry , Proto-Oncogene Proteins p21(ras)/genetics , Proto-Oncogene Proteins p21(ras)/immunology , p21-Activated Kinases/chemistry , p21-Activated Kinases/genetics , p21-Activated Kinases/immunology , rac GTP-Binding Proteins/genetics , rac GTP-Binding Proteins/immunology , RAC2 GTP-Binding Protein
3.
Fish Shellfish Immunol ; 84: 998-1006, 2019 Jan.
Article in English | MEDLINE | ID: mdl-30399403

ABSTRACT

Rac1 and Rac2, belonging to the small Rho GTPase family, play an important role during the immune responses. In this study, a Rac1 homolog (CsRac1) and a Rac2 homolog (CsRac2) were cloned from the Cynoglossus semilaevis. The full-length of CsRac1 and CsRac2 cDNA was 1219 bp and 1047 bp, respectively. Both CsRac1 and CsRac2 contain a 579 bp open reading frame (ORF) which encoding a 192 amino acids putative protein. The predicted molecular weight of CsRac1 and CsRac2 was 21.41Ć¢Ā€ĀÆkDa and 21.35Ć¢Ā€ĀÆkDa, and their theoretical pI was 8.50 and 7.91, respectively. Sequence analysis showed that the conserved RHO domain was detected both from amino acid of CsRac1 and CsRac2. Homologous analysis showed that CsRac1 and CsRac2 share high conservation with other counterparts from different species. The CsRac1 and CsRac2 transcript showed wide tissue distribution, in which CsRac1 and CsRac2 exhibit the highest expression level in liver and gill, respectively. The expression level of CsRac1 and CsRac2 fluctuated in the liver and gill tissues at different time points after challenged by Vibrio harveyi. Specifically, CsRac1 and CsRac2 were significantly up-regulated at 48Ć¢Ā€ĀÆh and 96Ć¢Ā€ĀÆh post injection. Moreover, the knocking down of CsRac1 and CsRac2 in cell line (TSHKC) reduced the expression of CsPAK1, CsIL1-Ɵ and CsTNF-α. The present data suggests that CsRac1 and CsRac2 might play important roles in the innate immunity of half-smooth tongue sole.


Subject(s)
Fish Diseases/immunology , Fish Proteins/genetics , Fish Proteins/immunology , Flatfishes/genetics , Flatfishes/immunology , Gene Expression Regulation/immunology , Immunity, Innate/genetics , Amino Acid Sequence , Animals , Base Sequence , Fish Proteins/chemistry , Gene Expression Profiling/veterinary , Phylogeny , Sequence Alignment/veterinary , Vibrio/physiology , Vibrio Infections/immunology , rac GTP-Binding Proteins/chemistry , rac GTP-Binding Proteins/genetics , rac GTP-Binding Proteins/immunology , rac1 GTP-Binding Protein/chemistry , rac1 GTP-Binding Protein/genetics , rac1 GTP-Binding Protein/immunology , RAC2 GTP-Binding Protein
4.
J Struct Biol ; 202(1): 13-24, 2018 04.
Article in English | MEDLINE | ID: mdl-29196061

ABSTRACT

Rho family GTPases regulate a wide range of cellular processes. This includes cellular dynamics where three subfamilies, Rho, Rac, and Cdc42, are known to regulate cell shape and migration though coordinate action. Activation of Rho proteins largely depends on Rho Guanine nucleotide Exchange Factors (RhoGEFs) through a catalytic Dbl homology (DH) domain linked to a pleckstrin homology (PH) domain that subserves various functions. The PH domains from Lbc RhoGEFs, which specifically activate RhoA, have been shown to bind to activated RhoA. Here, p190RhoGEF is shown to also bind Rac1Ā·GTP. Crystal structures reveal that activated Rac1 and RhoA use their effector-binding surfaces to associate with the same hydrophobic surface on the PH domain. Both activated RhoA and Rac1 can stimulate exchange of nucleotide on RhoA by localization of p190RhoGEF to its substrate, RhoAĀ·GDP, in vitro. The binding of activated RhoA provides a mechanism for positive feedback regulation as previously proposed for the family of Lbc RhoGEFs. In contrast, the novel interaction between activated Rac1 and p190RhoGEF reveals a potential mechanism for cross-talk regulation where Rac can directly effect stimulation of RhoA. The greater capacity of Rac1 to stimulate p190RhoGEF among the Lbc RhoGEFs suggests functional specialization.


Subject(s)
Guanine Nucleotide Exchange Factors/chemistry , Protein Domains , rac GTP-Binding Proteins/chemistry , rhoA GTP-Binding Protein/chemistry , Amino Acid Sequence , Feedback, Physiological , Guanine Nucleotide Exchange Factors/genetics , Guanine Nucleotide Exchange Factors/metabolism , Guanosine 5'-O-(3-Thiotriphosphate)/chemistry , Guanosine 5'-O-(3-Thiotriphosphate)/metabolism , Humans , Models, Molecular , Protein Binding , Sequence Homology, Amino Acid , rac GTP-Binding Proteins/genetics , rac GTP-Binding Proteins/metabolism , rhoA GTP-Binding Protein/genetics , rhoA GTP-Binding Protein/metabolism
5.
J Biol Chem ; 292(29): 12178-12191, 2017 07 21.
Article in English | MEDLINE | ID: mdl-28600358

ABSTRACT

Developmental angiogenesis and the maintenance of the blood-brain barrier involve endothelial cell adhesion, which is linked to cytoskeletal dynamics. GPR124 (also known as TEM5/ADGRA2) is an adhesion G protein-coupled receptor family member that plays a pivotal role in brain angiogenesis and in ensuring a tight blood-brain barrier. However, the signaling properties of GPR124 remain poorly defined. Here, we show that ectopic expression of GPR124 promotes cell adhesion, additive to extracellular matrix-dependent effect, coupled with filopodia and lamellipodia formation and an enrichment of a pool of the G protein-coupled receptor at actin-rich cellular protrusions containing VASP, a filopodial marker. Accordingly, GPR124-expressing cells also displayed increased activation of both Rac and Cdc42 GTPases. Mechanistically, we uncover novel direct interactions between endogenous GPR124 and the Rho guanine nucleotide exchange factors Elmo/Dock and intersectin (ITSN). Small fragments of either Elmo or ITSN1 that bind GPR124 blocked GPR124-induced cell adhesion. In addition, GƟƎĀ³ interacts with the C-terminal tail of GPR124 and promotes the formation of a GPR124-Elmo complex. Furthermore, GPR124 also promotes the activation of the Elmo-Dock complex, as measured by Elmo phosphorylation on a conserved C-terminal tyrosine residue. Interestingly, Elmo and ITSN1 also interact with each other independently of their GPR124-recognition regions. Moreover, endogenous phospho-Elmo and ITSN1 co-localize with GPR124 at lamellipodia of adhering endothelial cells, where GPR124 expression contributes to polarity acquisition during wound healing. Collectively, our results indicate that GPR124 promotes cell adhesion via Elmo-Dock and ITSN. This constitutes a previously unrecognized complex formed of atypical and conventional Rho guanine nucleotide exchange factors for Rac and Cdc42 that is putatively involved in GPR124-dependent angiogenic responses.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , Adaptor Proteins, Vesicular Transport/metabolism , Endothelium, Vascular/metabolism , Protein Processing, Post-Translational , Receptors, G-Protein-Coupled/metabolism , rac GTP-Binding Proteins/metabolism , Adaptor Proteins, Signal Transducing/chemistry , Adaptor Proteins, Vesicular Transport/chemistry , Animals , COS Cells , Cell Adhesion , Cells, Cultured , Chlorocebus aethiops , Endothelium, Vascular/cytology , HEK293 Cells , Human Umbilical Vein Endothelial Cells/cytology , Human Umbilical Vein Endothelial Cells/metabolism , Humans , Peptide Fragments/chemistry , Peptide Fragments/genetics , Peptide Fragments/metabolism , Phosphorylation , Protein Interaction Domains and Motifs , Protein Multimerization , Protein Transport , Pseudopodia/metabolism , RNA Interference , Receptors, G-Protein-Coupled/antagonists & inhibitors , Receptors, G-Protein-Coupled/chemistry , Receptors, G-Protein-Coupled/genetics , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism , rac GTP-Binding Proteins/chemistry
6.
J Biol Chem ; 292(35): 14334-14348, 2017 09 01.
Article in English | MEDLINE | ID: mdl-28710284

ABSTRACT

Synaptic vesicles (SVs) form distinct pools at synaptic terminals, and this well-regulated separation is necessary for normal neurotransmission. However, how the SV cluster, in particular synaptic compartments, maintains normal neurotransmitter release remains a mystery. The presynaptic protein Neurexin (NRX) plays a significant role in synaptic architecture and function, and some evidence suggests that NRX is associated with neurological disorders, including autism spectrum disorders. However, the role of NRX in SV clustering is unclear. Here, using the neuromuscular junction at the 2-3 instar stages of Drosophila larvae as a model and biochemical imaging and electrophysiology techniques, we demonstrate that Drosophila NRX (DNRX) plays critical roles in regulating synaptic terminal clustering and release of SVs. We found that DNRX controls the terminal clustering and release of SVs by stimulating presynaptic F-actin. Furthermore, our results indicate that DNRX functions through the scaffold protein Scribble and the GEF protein DPix to activate the small GTPase Ras-related C3 Botulinum toxin substrate 1 (Rac1). We observed a direct interaction between the C-terminal PDZ-binding motif of DNRX and the PDZ domains of Scribble and that Scribble bridges DNRX to DPix, forming a DNRX-Scribble-DPix complex that activates Rac1 and subsequently stimulates presynaptic F-actin assembly and SV clustering. Taken together, our work provides important insights into the function of DNRX in regulating SV clustering, which could help inform further research into pathological neurexin-mediated mechanisms in neurological disorders such as autism.


Subject(s)
ATP-Binding Cassette Transporters/metabolism , Actin Cytoskeleton/metabolism , Cell Adhesion Molecules, Neuronal/metabolism , Drosophila Proteins/metabolism , Drosophila melanogaster/metabolism , Membrane Proteins/metabolism , Neuromuscular Junction/metabolism , Synaptic Vesicles/metabolism , ATP-Binding Cassette Transporters/chemistry , ATP-Binding Cassette Transporters/genetics , Animals , Animals, Genetically Modified , Cell Adhesion Molecules, Neuronal/chemistry , Cell Adhesion Molecules, Neuronal/genetics , Drosophila Proteins/agonists , Drosophila Proteins/chemistry , Drosophila Proteins/genetics , Drosophila melanogaster/cytology , Drosophila melanogaster/genetics , Drosophila melanogaster/growth & development , Electrophysiological Phenomena , Gene Deletion , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , HEK293 Cells , Humans , Larva/cytology , Larva/genetics , Larva/growth & development , Larva/metabolism , Membrane Proteins/chemistry , Membrane Proteins/genetics , Mutation , Nerve Tissue Proteins/chemistry , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Neuromuscular Junction/cytology , Neuromuscular Junction/growth & development , Peptide Fragments/chemistry , Peptide Fragments/genetics , Peptide Fragments/metabolism , Protein Interaction Domains and Motifs , Protein Multimerization , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism , rac GTP-Binding Proteins/agonists , rac GTP-Binding Proteins/chemistry , rac GTP-Binding Proteins/metabolism
7.
Mol Cell ; 34(2): 223-33, 2009 Apr 24.
Article in English | MEDLINE | ID: mdl-19394299

ABSTRACT

Rho family GTPases are important cellular switches and control a number of physiological functions. Understanding the molecular basis of interaction of these GTPases with their effectors is crucial in understanding their functions in the cell. Here we present the crystal structure of the complex of Rac2 bound to the split pleckstrin homology (spPH) domain of phospholipase C-gamma(2) (PLCgamma(2)). Based on this structure, we illustrate distinct requirements for PLCgamma(2) activation by Rac and EGF and generate Rac effector mutants that specifically block activation of PLCgamma(2), but not the related PLCbeta(2) isoform. Furthermore, in addition to the complex, we report the crystal structures of free spPH and Rac2 bound to GDP and GTPgammaS. These structures illustrate a mechanism of conformational switches that accompany formation of signaling active complexes and highlight the role of effector binding as a common feature of Rac and Cdc42 interactions with a variety of effectors.


Subject(s)
Phospholipase C gamma/chemistry , rac GTP-Binding Proteins/chemistry , Amino Acid Sequence , Binding Sites , Crystallography, X-Ray , Enzyme Activation , Epidermal Growth Factor/metabolism , Humans , Models, Molecular , Molecular Sequence Data , Phospholipase C gamma/metabolism , Protein Interaction Mapping , Protein Structure, Tertiary , Sequence Alignment , Substrate Specificity , Thermodynamics , rac GTP-Binding Proteins/metabolism , RAC2 GTP-Binding Protein
8.
J Biol Chem ; 290(28): 17056-72, 2015 Jul 10.
Article in English | MEDLINE | ID: mdl-25903139

ABSTRACT

The Rho GTPase Rac is crucially involved in controlling multiple B cell functions, including those regulated by the B cell receptor (BCR) through increased cytosolic Ca(2+). The underlying molecular mechanisms and their relevance to the functions of intact B cells have thus far remained unknown. We have previously shown that the activity of phospholipase CƎĀ³2 (PLCƎĀ³2), a key constituent of the BCR signalosome, is stimulated by activated Rac through direct protein-protein interaction. Here, we use a Rac-resistant mutant of PLCƎĀ³2 to functionally reconstitute cultured PLCƎĀ³2-deficient DT40 B cells and to examine the effects of the Rac-PLCƎĀ³2 interaction on BCR-mediated changes of intracellular Ca(2+) and regulation of Ca(2+)-regulated and nuclear-factor-of-activated-T-cell-regulated gene transcription at the level of single, intact B cells. The results show that the functional Rac-PLCƎĀ³2 interaction causes marked increases in the following: (i) sensitivity of B cells to BCR ligation; (ii) BCR-mediated Ca(2+) release from intracellular stores; (iii) Ca(2+) entry from the extracellular compartment; and (iv) nuclear translocation of the Ca(2+)-regulated nuclear factor of activated T cells. Hence, Rac-mediated stimulation of PLCƎĀ³2 activity serves to amplify B cell receptor-induced Ca(2+) signaling.


Subject(s)
Calcium Signaling/physiology , Phospholipase C gamma/metabolism , Receptors, Antigen, B-Cell/metabolism , rac GTP-Binding Proteins/metabolism , Active Transport, Cell Nucleus , Amino Acid Substitution , Animals , Avian Proteins/chemistry , Avian Proteins/genetics , Avian Proteins/metabolism , B-Lymphocytes/cytology , B-Lymphocytes/immunology , B-Lymphocytes/metabolism , Cell Line , Chickens , Humans , Mice , Models, Molecular , Mutagenesis, Site-Directed , NFATC Transcription Factors/metabolism , Phospholipase C gamma/chemistry , Phospholipase C gamma/genetics , Protein Conformation , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , rac GTP-Binding Proteins/chemistry , rac GTP-Binding Proteins/genetics
9.
Cell Mol Life Sci ; 71(9): 1703-21, 2014 May.
Article in English | MEDLINE | ID: mdl-24276852

ABSTRACT

Rho GTPases are a class of evolutionarily conserved proteins comprising 20 members, which are predominantly known for their role in regulating the actin cytoskeleton. They are primarily regulated by binding of GTP/GDP, which is again controlled by regulators like GEFs, GAPs, and RhoGDIs. Rho GTPases are thus far well known for their role in the regulation of actin cytoskeleton and migration. Here we present an overview on the role of Rho GTPases in regulating cell shape and plasticity of cell migration. Finally, we discuss the emerging roles of ubiquitination and sumoylation in regulating Rho GTPases and cell migration.


Subject(s)
rho GTP-Binding Proteins/metabolism , Cell Movement , Cell Shape , Humans , Mesenchymal Stem Cells/cytology , Mesenchymal Stem Cells/metabolism , Sumoylation , Ubiquitination , cdc42 GTP-Binding Protein/chemistry , cdc42 GTP-Binding Protein/metabolism , rac GTP-Binding Proteins/chemistry , rac GTP-Binding Proteins/metabolism , rho GTP-Binding Proteins/chemistry , rho GTP-Binding Proteins/classification
10.
Proc Natl Acad Sci U S A ; 109(8): 3018-23, 2012 Feb 21.
Article in English | MEDLINE | ID: mdl-22323579

ABSTRACT

Glioblastoma, the most common primary malignant cancer of the brain, is characterized by rapid tumor growth and infiltration of tumor cells throughout the brain. These traits cause glioblastomas to be highly resistant to current therapies with a resultant poor prognosis. Although aberrant oncogenic signaling driven by signature genetic alterations, such as EGF receptor (EGFR) gene amplification and mutation, plays a major role in glioblastoma pathogenesis, the responsible downstream mechanisms remain less clear. Here, we report that EGFRvIII (also known as ΔEGFR and de2-7EGFR), a constitutively active EGFR mutant that is frequently co-overexpressed with EGFR in human glioblastoma, promotes tumorigenesis through Src family kinase (SFK)-dependent phosphorylation of Dock180, a guanine nucleotide exchange factor for Rac1. EGFRvIII induces phosphorylation of Dock180 at tyrosine residue 722 (Dock180(Y722)) and stimulates Rac1-signaling, glioblastoma cell survival and migration. Consistent with this being causal, siRNA knockdown of Dock180 or expression of a Dock180(Y722F) mutant inhibits each of these EGFRvIII-stimulated activities. The SFKs, Src, Fyn, and Lyn, induce phosphorylation of Dock180(Y722) and inhibition of these SFKs by pharmacological inhibitors or shRNA depletion markedly attenuates EGFRvIII-induced phosphorylation of Dock180(Y722), Rac1 activity, and glioblastoma cell migration. Finally, phosphorylated Dock180(Y722) is coexpressed with EGFRvIII and phosphorylated Src(Y418) in clinical specimens, and such coexpression correlates with an extremely poor survival in glioblastoma patients. These results suggest that targeting the SFK-p-Dock180(Y722)-Rac1 signaling pathway may offer a novel therapeutic strategy for glioblastomas with EGFRvIII overexpression.


Subject(s)
Cell Transformation, Neoplastic/pathology , ErbB Receptors/metabolism , Glioblastoma/enzymology , Glioblastoma/pathology , Phosphotyrosine/metabolism , rac GTP-Binding Proteins/metabolism , src-Family Kinases/metabolism , Amino Acid Sequence , Cell Line, Tumor , Cell Movement , Cell Survival , Humans , Molecular Sequence Data , Phosphorylation , Prognosis , Proto-Oncogene Proteins c-fyn/metabolism , rac GTP-Binding Proteins/chemistry , rac1 GTP-Binding Protein/metabolism
11.
J Biol Chem ; 287(49): 41417-31, 2012 Nov 30.
Article in English | MEDLINE | ID: mdl-23035122

ABSTRACT

We have demonstrated that phospholipase D2 (PLD2) is a guanine nucleotide exchange factor (GEF) for Rac2 and determined the PLD2 domains and amino acid site(s) responsible for its GEF activity. Experiments using GST fusion proteins or GST-free counterparts, purified proteins revealed that the PX domain is sufficient to exert GEF activity similar to full-length PLD2. The PLD2-GEF catalytic site is formed by a hydrophobic pocket of residues Phe-107, Phe-129, Leu-166, and Leu-173, all of which are in the PX domain. A nearby Arg-172 is also important in the overall activity. PX mutants altering any of those five amino acids fail to have GEF activity but still bind to Rac2, while their lipase activity was mostly unaffected. In addition to the PX domain, a region in the pleckstrin homology domain (Ile-306-Ala-310) aids in the PX-mediated GEF activity by providing a docking site to hold Rac2 in place during catalysis. We conclude that PLD2 is a unique GEF, with the PX being the major catalytic domain for its GEF activity, whereas the pleckstrin homology domain assists in the PX-mediated activity. The physiological relevance of this novel GEF in cell biology is demonstrated here in chemotaxis and phagocytosis of leukocytes, as the specific PX and PH mutants abolished cell function. Thus, this study reveals for the first time the catalytic site that forms the basis for the mechanism behind the GEF activity of PLD2.


Subject(s)
Guanine Nucleotide Exchange Factors/metabolism , Phospholipase D/chemistry , Animals , COS Cells , Catalytic Domain , Cell Movement , Chemotaxis , Chlorocebus aethiops , Fluorescence Resonance Energy Transfer , Guanosine Triphosphate/chemistry , Humans , Leukocytes/metabolism , Lipase/chemistry , Macrophages/metabolism , Mice , Mutagenesis, Site-Directed , Phagocytosis , Protein Conformation , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Structure-Activity Relationship , rac GTP-Binding Proteins/chemistry , RAC2 GTP-Binding Protein
12.
Proteins ; 81(5): 906-10, 2013 May.
Article in English | MEDLINE | ID: mdl-23239367

ABSTRACT

DOCK180 family proteins are Rho guanine nucleotide exchange factors. DOCK1-5 contains an N-terminal SH3 domain implicated in their autoinhibition. Release of the closed conformation requires the interaction between SH3 and engulfment and cell motility (ELMO). Here, we solved the solution structure of DOCK180 SH3 domain, which shares similar target binding features with the SH3 domain of DOCK2. The conserved N-terminal extension packs with the SH3 core domain and forms a new target binding site distinct from the canonical "PxxP" site. Our results demonstrate that the bidentate target binding mode of DOCK180 SH3 domain might be a general feature in all DOCK proteins.


Subject(s)
rac GTP-Binding Proteins/chemistry , src Homology Domains , Amino Acid Sequence , Humans , Models, Molecular , Molecular Sequence Data , Nuclear Magnetic Resonance, Biomolecular , Sequence Alignment
13.
J Am Chem Soc ; 135(13): 5044-51, 2013 Apr 03.
Article in English | MEDLINE | ID: mdl-23461393

ABSTRACT

The manner in which the heterotrimeric G protein complexes GƟ1ƎĀ³2 and GαiƟ1ƎĀ³2 interact with membranes is likely related to their biological function. We combined complementary measurements from sum frequency generation (SFG) vibrational and attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy to determine the possible membrane orientations of GƟ1ƎĀ³2 and the GαiƟ1ƎĀ³2 heterotrimer more precisely than could be achieved using SFG alone. The most likely orientations of GƟ1ƎĀ³2 and the GαiƟ1ƎĀ³2 heterotrimer were both determined to fall within a similar narrow range of twist and tilt angles, suggesting that GƟ1ƎĀ³2 may bind to Gαi without a significant change in orientation. This "basal" orientation seems to depend primarily on the geranylgeranylated C-terminus of GƎĀ³2 along with basic residues at the N-terminus of Gαi, and suggests that activated G protein-coupled receptors (GPCRs) must reorient G protein heterotrimers at lipid bilayers to catalyze nucleotide exchange. The innovative methodologies developed in this paper can be widely applied to study the membrane orientation of other proteins in situ.


Subject(s)
Lipid Bilayers/chemistry , Receptors, G-Protein-Coupled/chemistry , Spectrum Analysis , rac GTP-Binding Proteins/chemistry , Animals , Models, Molecular , Protein Structure, Secondary , Rats , Spectroscopy, Fourier Transform Infrared , Vibration
14.
J Biol Chem ; 286(4): 2689-95, 2011 Jan 28.
Article in English | MEDLINE | ID: mdl-21098037

ABSTRACT

Protein kinase activation, via autophosphorylation of the activation loop, is a common regulatory mechanism in phosphorylation-dependent signaling cascades. Despite the prevalence of this reaction and its importance in biological regulation, the molecular mechanisms of autophosphorylation are poorly understood. In this study, we developed a kinetic approach to distinguish quantitatively between cis- and trans-pathways in an autocatalytic reaction. Using this method, we have undertaken a detailed kinetic analysis for the autoactivation mechanism of p21-activated protein kinase 2 (PAK2). PAK2 is regulated in vivo and in vitro by small GTP-binding proteins, Cdc42 and Rac. Full activation of PAK2 requires autophosphorylation of the conserved threonine, Thr(402), in the activation loop of its catalytic kinase domain. Analyses of the time courses of substrate reaction during PAK2 autoactivation suggest that autophosphorylation of Thr(402) in PAK2 obeys a two-step mechanism of cis initiation, followed by trans amplification. The unphosphorylated PAK2 undergoes an intramolecular (cis) autophosphorylation on Thr(402) to produce phosphorylated PAK2, and this newly formed active PAK2 then phosphorylates other PAK2 molecules at Thr(402) in an intermolecular (trans) manner. Based on the kinetic equation derived, all microscopic kinetic constants for the cis and trans autophosphorylation have been estimated quantitatively. The advantage of the new method is not only its usefulness in the study of fast activation reactions, but its convenience in the study of substrate effects on modification reaction. It would be particularly useful when the regulatory mechanism of the autophosphorylation reaction toward certain enzymes is being assessed.


Subject(s)
Models, Chemical , p21-Activated Kinases/chemistry , Animals , Cell Line , Enzyme Activation/physiology , Humans , Kinetics , Phosphorylation/physiology , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Spodoptera , cdc42 GTP-Binding Protein/chemistry , cdc42 GTP-Binding Protein/genetics , cdc42 GTP-Binding Protein/metabolism , p21-Activated Kinases/genetics , p21-Activated Kinases/metabolism , rac GTP-Binding Proteins/chemistry , rac GTP-Binding Proteins/genetics , rac GTP-Binding Proteins/metabolism
15.
Biochem Biophys Res Commun ; 425(4): 892-6, 2012 Sep 07.
Article in English | MEDLINE | ID: mdl-22902632

ABSTRACT

Phagocyte NADPH oxidase catalyzes the reduction of molecular oxygen to superoxide and is essential for defense against microbes. Rac2 is a low molecular weight GTP-binding protein that has been implicated in the regulation of phagocyte NADPH oxidase. Here we report that Cys(157) of Rac2 is a target of S-glutathionylation and that this modification is reversed by dithiothreitol as well as enzymatically by thioltransferase in the presence of GSH. S-glutathionylated Rac2 enhanced the binding of GTP, presumably due to structural alterations. These results elucidate the redox regulation of cysteine in Rac2 and a possible mechanism for regulating NADPH oxidase activation.


Subject(s)
Cysteine/metabolism , Glutathione/metabolism , Guanosine Triphosphate/metabolism , NADP/metabolism , rac GTP-Binding Proteins/metabolism , Animals , Cysteine/chemistry , Cysteine/genetics , Dithiothreitol/chemistry , Enzyme Activation , Glutathione/chemistry , Guanosine Triphosphate/chemistry , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , rac GTP-Binding Proteins/chemistry , rac GTP-Binding Proteins/genetics , RAC2 GTP-Binding Protein
16.
Biochemistry ; 50(6): 1070-80, 2011 Feb 15.
Article in English | MEDLINE | ID: mdl-21033699

ABSTRACT

Guanine nucleotide exchange factors (GEFs) activate Rho GTPases by catalyzing the exchange of bound GDP for GTP, thereby resulting in downstream effector recognition. Two metazoan families of GEFs have been described: Dbl-GEF family members that share conserved Dbl homology (DH) and Pleckstrin homology (PH) domains and the more recently described Dock180 family members that share little sequence homology with the Dbl family and are characterized by conserved Dock homology regions 1 and 2 (DHR-1 and -2, respectively). While extensive characterization of the Dbl family has been performed, less is known about how Dock180 family members act as GEFs, with only a single X-ray structure having recently been reported for the Dock9-Cdc42 complex. To learn more about the mechanisms used by the founding member of the family, Dock180, to act as a Rac-specific GEF, we set out to identify and characterize its limit functional GEF domain. A C-terminal portion of the DHR-2 domain, composed of approximately 300 residues (designated as Dock180(DHR-2c)), is shown to be necessary and sufficient for robust Rac-specific GEF activity both in vitro and in vivo. We further show that Dock180(DHR-2c) binds to Rac in a manner distinct from that of Rac-GEFs of the Dbl family. Specifically, Ala(27) and Trp(56) of Rac appear to provide a bipartite binding site for the specific recognition of Dock180(DHR-2c), whereas for Dbl family Rac-GEFs, Trp(56) of Rac is the sole primary determinant of GEF specificity. On the basis of our findings, we are able to define the core of Dock180 responsible for its Rac-GEF activity as well as highlight key recognition sites that distinguish different Dock180 family members and determine their corresponding GTPase specificities.


Subject(s)
Guanine Nucleotide Exchange Factors/chemistry , rac GTP-Binding Proteins/chemistry , Binding Sites , Catalysis , Fluorescent Antibody Technique, Indirect , Guanine Nucleotide Exchange Factors/metabolism , Protein Structure, Tertiary , rac GTP-Binding Proteins/metabolism
17.
J Biol Chem ; 285(17): 13211-22, 2010 Apr 23.
Article in English | MEDLINE | ID: mdl-20167601

ABSTRACT

The Dock180 family of atypical Rho family guanine nucleotide exchange factors (Rho-GEFs) regulate a variety of processes involving cellular or subcellular polarization, including cell migration and phagocytosis. Each contains a Dock homology region-1 (DHR-1) domain that is required to localize its GEF activity to a specific membrane compartment where levels of phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P(3)) are up-regulated by the local activity of PtdIns 3-kinase. Here we define the structural and energetic bases of phosphoinositide specificity by the DHR-1 domain of Dock1 (a GEF for Rac1), and show that DHR-1 utilizes a C2 domain scaffold and surface loops to create a basic pocket on its upper surface for recognition of the PtdIns(3,4,5)P(3) head group. The pocket has many of the characteristics of those observed in pleckstrin homology domains. We show that point mutations in the pocket that abolish phospholipid binding in vitro ablate the ability of Dock1 to induce cell polarization, and propose a model that brings together recent mechanistic and structural studies to rationalize the central role of DHR-1 in dynamic membrane targeting of the Rho-GEF activity of Dock180.


Subject(s)
Models, Molecular , rac GTP-Binding Proteins/chemistry , Animals , Binding Sites , Cytoskeletal Proteins , Drosophila Proteins/chemistry , Drosophila Proteins/genetics , Drosophila Proteins/metabolism , Drosophila melanogaster , Humans , Multigene Family/physiology , Phosphatidylinositol 3-Kinases/genetics , Phosphatidylinositol 3-Kinases/metabolism , Phosphatidylinositol Phosphates/chemistry , Phosphatidylinositol Phosphates/genetics , Phosphatidylinositol Phosphates/metabolism , Protein Structure, Secondary , Protein Structure, Tertiary , Structural Homology, Protein , Structure-Activity Relationship , rac GTP-Binding Proteins/genetics , rac GTP-Binding Proteins/metabolism , rho GTP-Binding Proteins/chemistry , rho GTP-Binding Proteins/genetics , rho GTP-Binding Proteins/metabolism
18.
Fish Shellfish Immunol ; 30(2): 501-8, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21130170

ABSTRACT

The Rac proteins are members of the Rho family of small G proteins and are implicated in the regulation of several pathways, including those leading to cytoskeleton reorganization, gene expression, cell proliferation, cell adhesion and cell migration and survival. In this investigation, a Rac gene (named as LycRac gene) was obtained from the large yellow croaker and it was expressed in Escherichia coli and purified. Subsequently the specific antibody was raised using the purified fusion protein (GST-LycRac). Moreover, the GTP-binding assay showed that the LycRac protein had GTP-binding activity. The LycRac gene was ubiquitously transcribed and expressed in 9 tissues. Quantitative real-time RT-PCR and Western blot analysis revealed the highest expression in gill and the weakest expression in spleen. Time-course analysis revealed that LycRac expression was obviously up-regulated in blood, spleen and liver after immunization with polyinosinic polycytidynic acid (poly I:C), formalin-inactive Gram-negative bacterium Vibrio parahemolyticus and bacterial lipopolysaccharides (LPS). These results suggested that LycRac protein might play an important role in the immune response against microorganisms in large yellow croaker.


Subject(s)
Perciformes/immunology , Up-Regulation , rac GTP-Binding Proteins/genetics , rac GTP-Binding Proteins/immunology , Adjuvants, Immunologic/pharmacology , Amino Acid Sequence , Animals , Base Sequence , Gene Expression Profiling , Gene Expression Regulation, Enzymologic/drug effects , Lipopolysaccharides/pharmacology , Molecular Sequence Data , Perciformes/classification , Perciformes/microbiology , Phylogeny , Poly I-C/pharmacology , Protein Binding , Sequence Alignment , Up-Regulation/drug effects , Up-Regulation/immunology , Vibrio parahaemolyticus/immunology , rac GTP-Binding Proteins/chemistry
19.
Biol Pharm Bull ; 34(6): 845-9, 2011.
Article in English | MEDLINE | ID: mdl-21628882

ABSTRACT

Translocation of two Rac/Rop guanosine 5'-triphosphate-binding proteins from Scoparia dulcis, Sdrac-1 and Sdrac-2, was examined employing transformed belladonna which overproduces these proteins as glutathione-S-transferase-tagged forms. The transferase activities of the fused proteins in microsomal fraction of belladonna markedly increased by the incubation with methyl jasmonate either in Sdrac-1 or Sdrac-2 transformant, while low and constant activities were observed in the untreated control. Recombinant Sdrac-2 protein was found to bind to prenyl chain in the presence of cell extracts prepared from methyl jasmonate-treated S. dulcis, however, Sdrac-1 was palmitoylated by the addition of the cell extracts. These results suggest that both Sdrac-1 and Sdrac-2 translocate to plant membranes by the stimulation with methyl jasmonate, however, targeting of these proteins is triggered by the independent modification mechanisms, palmitoylation for Sdrac-1 and prenylation for Sdrac-2.


Subject(s)
Acetates/pharmacology , Cyclopentanes/pharmacology , Oxylipins/pharmacology , Plant Growth Regulators/pharmacology , Plant Proteins/metabolism , Scoparia/enzymology , rac GTP-Binding Proteins/metabolism , rac1 GTP-Binding Protein/metabolism , Acylation , Amino Acid Sequence , Atropa belladonna/drug effects , Atropa belladonna/genetics , Atropa belladonna/metabolism , Genes, Reporter/drug effects , Glutathione Transferase/genetics , Glutathione Transferase/metabolism , Microsomes/drug effects , Microsomes/metabolism , Molecular Sequence Data , Palmitic Acid/metabolism , Plant Proteins/chemistry , Plant Proteins/genetics , Plants, Genetically Modified/drug effects , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Protein Prenylation/drug effects , Protein Processing, Post-Translational/drug effects , Protein Transport/drug effects , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism , Scoparia/metabolism , Seedlings/drug effects , Seedlings/genetics , Seedlings/metabolism , Sequence Alignment , Up-Regulation/drug effects , rac GTP-Binding Proteins/chemistry , rac GTP-Binding Proteins/genetics , rac1 GTP-Binding Protein/chemistry , rac1 GTP-Binding Protein/genetics , RAC2 GTP-Binding Protein
20.
Cells ; 10(11)2021 10 20.
Article in English | MEDLINE | ID: mdl-34831028

ABSTRACT

Coronary artery disease caused by atherosclerosis is a major cause of morbidity and mortality around the world. Data from preclinical and clinical studies support the belief that atherosclerosis is an inflammatory disease that is mediated by innate and adaptive immune signaling mechanisms. This review sought to highlight the role of Rac-mediated inflammatory signaling in the mechanisms driving atherosclerotic calcification. In addition, current clinical treatment strategies that are related to targeting hypercholesterolemia as a critical risk factor for atherosclerotic vascular disease are addressed in relation to the effects on Rac immune signaling and the implications for the future of targeting immune responses in the treatment of calcific atherosclerosis.


Subject(s)
Atherosclerosis/enzymology , Atherosclerosis/immunology , Signal Transduction , rac GTP-Binding Proteins/metabolism , Amino Acid Sequence , Atherosclerosis/drug therapy , Humans , Hydroxymethylglutaryl-CoA Reductase Inhibitors/therapeutic use , Inflammation/complications , Inflammation/pathology , Models, Biological , rac GTP-Binding Proteins/chemistry
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