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1.
Cell ; 183(5): 1234-1248.e25, 2020 11 25.
Artículo en Inglés | MEDLINE | ID: mdl-33113353

RESUMEN

Brain metastasis (br-met) develops in an immunologically unique br-met niche. Central nervous system-native myeloid cells (CNS-myeloids) and bone-marrow-derived myeloid cells (BMDMs) cooperatively regulate brain immunity. The phenotypic heterogeneity and specific roles of these myeloid subsets in shaping the br-met niche to regulate br-met outgrowth have not been fully revealed. Applying multimodal single-cell analyses, we elucidated a heterogeneous but spatially defined CNS-myeloid response during br-met outgrowth. We found Ccr2+ BMDMs minimally influenced br-met while CNS-myeloid promoted br-met outgrowth. Additionally, br-met-associated CNS-myeloid exhibited downregulation of Cx3cr1. Cx3cr1 knockout in CNS-myeloid increased br-met incidence, leading to an enriched interferon response signature and Cxcl10 upregulation. Significantly, neutralization of Cxcl10 reduced br-met, while rCxcl10 increased br-met and recruited VISTAHi PD-L1+ CNS-myeloid to br-met lesions. Inhibiting VISTA- and PD-L1-signaling relieved immune suppression and reduced br-met burden. Our results demonstrate that loss of Cx3cr1 in CNS-myeloid triggers a Cxcl10-mediated vicious cycle, cultivating a br-met-promoting, immune-suppressive niche.


Asunto(s)
Neoplasias Encefálicas/inmunología , Neoplasias Encefálicas/secundario , Quimiocina CXCL10/metabolismo , Terapia de Inmunosupresión , Células Mieloides/metabolismo , Animales , Células de la Médula Ósea/metabolismo , Neoplasias Encefálicas/genética , Neoplasias Encefálicas/patología , Receptor 1 de Quimiocinas CX3C/metabolismo , Sistema Nervioso Central/patología , Femenino , Perfilación de la Expresión Génica , Regulación Neoplásica de la Expresión Génica , Humanos , Interferones/metabolismo , Macrófagos/metabolismo , Proteínas de la Membrana/metabolismo , Ratones Endogámicos C57BL , Ratones Noqueados , Pruebas de Neutralización , Fenotipo , Linfocitos T/inmunología , Transcriptoma/genética
2.
Nucleic Acids Res ; 46(3): e14, 2018 02 16.
Artículo en Inglés | MEDLINE | ID: mdl-29140455

RESUMEN

Cell types in cell populations change as the condition changes: some cell types die out, new cell types may emerge and surviving cell types evolve to adapt to the new condition. Using single-cell RNA-sequencing data that measure the gene expression of cells before and after the condition change, we propose an algorithm, SparseDC, which identifies cell types, traces their changes across conditions and identifies genes which are marker genes for these changes. By solving a unified optimization problem, SparseDC completes all three tasks simultaneously. SparseDC is highly computationally efficient and demonstrates its accuracy on both simulated and real data.


Asunto(s)
Algoritmos , Linaje de la Célula/genética , Genes Esenciales , Familia de Multigenes , ARN/genética , Análisis de la Célula Individual/estadística & datos numéricos , Línea Celular , Línea Celular Tumoral , Conjuntos de Datos como Asunto , Células Epiteliales/citología , Células Epiteliales/metabolismo , Regulación de la Expresión Génica , Marcadores Genéticos , Humanos , Células Madre Pluripotentes Inducidas/citología , Células Madre Pluripotentes Inducidas/metabolismo , Queratinocitos/citología , Queratinocitos/metabolismo , Linfocitos/citología , Linfocitos/metabolismo , Células-Madre Neurales/citología , Células-Madre Neurales/metabolismo , ARN/metabolismo , Análisis de Secuencia de ARN/estadística & datos numéricos , Análisis de la Célula Individual/métodos
3.
Hum Mol Genet ; 26(10): 1863-1876, 2017 05 15.
Artículo en Inglés | MEDLINE | ID: mdl-28334996

RESUMEN

'Amelogenesis imperfecta' (AI) describes a group of inherited diseases of dental enamel that have major clinical impact. Here, we identify the aetiology driving AI in mice carrying a p.S55I mutation in enamelin; one of the most commonly mutated proteins underlying AI in humans. Our data indicate that the mutation inhibits the ameloblast secretory pathway leading to ER stress and an activated unfolded protein response (UPR). Initially, with the support of the UPR acting in pro-survival mode, Enamp.S55I heterozygous mice secreted structurally normal enamel. However, enamel secreted thereafter was structurally abnormal; presumably due to the UPR modulating ameloblast behaviour and function in an attempt to relieve ER stress. Homozygous mutant mice failed to produce enamel. We also identified a novel heterozygous ENAMp.L31R mutation causing AI in humans. We hypothesize that ER stress is the aetiological factor in this case of human AI as it shared the characteristic phenotype described above for the Enamp.S55I mouse. We previously demonstrated that AI in mice carrying the Amelxp.Y64H mutation is a proteinopathy. The current data indicate that AI in Enamp.S55I mice is also a proteinopathy, and based on comparative phenotypic analysis, we suggest that human AI resulting from the ENAMp.L31R mutation is another proteinopathic disease. Identifying a common aetiology for AI resulting from mutations in two different genes opens the way for developing pharmaceutical interventions designed to relieve ER stress or modulate the UPR during enamel development to ameliorate the clinical phenotype.


Asunto(s)
Amelogénesis Imperfecta/genética , Amelogénesis Imperfecta/metabolismo , Ameloblastos/metabolismo , Animales , Esmalte Dental/metabolismo , Proteínas del Esmalte Dental/genética , Proteínas del Esmalte Dental/metabolismo , Retículo Endoplásmico/genética , Retículo Endoplásmico/metabolismo , Retículo Endoplásmico/fisiología , Estrés del Retículo Endoplásmico/genética , Estrés del Retículo Endoplásmico/fisiología , Humanos , Ratones , Ratones Endogámicos C57BL , Mutación Puntual , Estrés Fisiológico , Respuesta de Proteína Desplegada
4.
J Allergy Clin Immunol ; 142(2): 485-496.e16, 2018 08.
Artículo en Inglés | MEDLINE | ID: mdl-29518421

RESUMEN

BACKGROUND: Food allergy is an increasing public health issue and the most common cause of life-threatening anaphylactic reactions. Conventional allergy tests assess for the presence of allergen-specific IgE, significantly overestimating the rate of true clinical allergy and resulting in overdiagnosis and adverse effect on health-related quality of life. OBJECTIVE: To undertake initial validation and assessment of a novel diagnostic tool, we used the mast cell activation test (MAT). METHODS: Primary human blood-derived mast cells (MCs) were generated from peripheral blood precursors, sensitized with patients' sera, and then incubated with allergen. MC degranulation was assessed by means of flow cytometry and mediator release. We compared the diagnostic performance of MATs with that of existing diagnostic tools to assess in a cohort of peanut-sensitized subjects undergoing double-blind, placebo-controlled challenge. RESULTS: Human blood-derived MCs sensitized with sera from patients with peanut, grass pollen, and Hymenoptera (wasp venom) allergy demonstrated allergen-specific and dose-dependent degranulation, as determined based on both expression of surface activation markers (CD63 and CD107a) and functional assays (prostaglandin D2 and ß-hexosaminidase release). In this cohort of peanut-sensitized subjects, the MAT was found to have superior discrimination performance compared with other testing modalities, including component-resolved diagnostics and basophil activation tests. Using functional principle component analysis, we identified 5 clusters or patterns of reactivity in the resulting dose-response curves, which at preliminary analysis corresponded to the reaction phenotypes seen at challenge. CONCLUSION: The MAT is a robust tool that can confer superior diagnostic performance compared with existing allergy diagnostics and might be useful to explore differences in effector cell function between basophils and MCs during allergic reactions.


Asunto(s)
Anafilaxia/diagnóstico , Pruebas Inmunológicas/métodos , Mastocitos/fisiología , Hipersensibilidad al Cacahuete/diagnóstico , Adolescente , Adulto , Alérgenos/inmunología , Arachis/inmunología , Prueba de Desgranulación de los Basófilos , Degranulación de la Célula , Células Cultivadas , Niño , Estudios de Cohortes , Femenino , Humanos , Inmunoglobulina E/metabolismo , Masculino , Adulto Joven
5.
Hum Mol Genet ; 23(9): 2468-80, 2014 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-24362885

RESUMEN

Inherited diseases caused by genetic mutations can arise due to loss of protein function. Alternatively, mutated proteins may mis-fold, impairing endoplasmic reticulum (ER) trafficking, causing ER stress and triggering the unfolded protein response (UPR). The UPR attempts to restore proteostasis but if unsuccessful drives affected cells towards apoptosis. Previously, we reported that in mice, the p.Tyr64His mutation in the enamel extracellular matrix (EEM) protein amelogenin disrupts the secretory pathway in the enamel-forming ameloblasts, resulting in eruption of malformed tooth enamel that phenocopies human amelogenesis imperfecta (AI). Defective amelogenin post-secretory self-assembly and processing within the developing EEM has been suggested to underlie the pathogenesis of X chromosome-linked AI. Here, we challenge this concept by showing that AI pathogenesis associated with the p.Tyr64His amelogenin mutation involves ameloblast apoptosis induced by ER stress. Furthermore, we show that 4-phenylbutyrate can rescue the enamel phenotype in affected female mice by promoting cell survival over apoptosis such that they are able to complete enamel formation despite the presence of the mutation, offering a potential therapeutic option for patients with this form of AI and emphasizing the importance of ER stress in the pathogenesis of this inherited conformational disease.


Asunto(s)
Amelogénesis Imperfecta/tratamiento farmacológico , Amelogénesis Imperfecta/metabolismo , Fenilbutiratos/uso terapéutico , Amelogénesis Imperfecta/genética , Amelogenina/genética , Animales , Western Blotting , Estrés del Retículo Endoplásmico/efectos de los fármacos , Masculino , Ratones , Ratones Mutantes , Microscopía Electrónica de Rastreo , Microscopía Electrónica de Transmisión , Mutación
6.
J Virol ; 89(1): 262-74, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25320325

RESUMEN

UNLABELLED: Skin keratinocytes represent a primary entry site for herpes simplex virus 1 (HSV-1) in vivo. The cellular proteins nectin-1 and herpesvirus entry mediator (HVEM) act as efficient receptors for both serotypes of HSV and are sufficient for disease development mediated by HSV-2 in mice. How HSV-1 enters skin and whether both nectin-1 and HVEM are involved are not known. We addressed the impact of nectin-1 during entry of HSV-1 into murine epidermis and investigated the putative contribution of HVEM. Using ex vivo infection of murine epidermis, we showed that HSV-1 entered the basal keratinocytes of the epidermis very efficiently. In nectin-1-deficient epidermis, entry was strongly reduced. Almost no entry was observed, however, in nectin-1-deficient keratinocytes grown in culture. This observation correlated with the presence of HVEM on the keratinocyte surface in epidermis and with the lack of HVEM expression in nectin-1-deficient primary keratinocytes. Our results suggest that nectin-1 is the primary receptor in epidermis, while HVEM has a more limited role. For primary murine keratinocytes, on which nectin-1 acts as a single receptor, electron microscopy suggested that HSV-1 can enter both by direct fusion with the plasma membrane and via endocytic vesicles. Thus, we concluded that nectin-1 directs internalization into keratinocytes via alternative pathways. In summary, HSV-1 entry into epidermis was shown to strongly depend on the presence of nectin-1, but the restricted presence of HVEM can potentially replace nectin-1 as a receptor, illustrating the flexibility employed by HSV-1 to efficiently invade tissue in vivo. IMPORTANCE: Herpes simplex virus (HSV) can cause a range of diseases in humans, from uncomplicated mucocutaneous lesions to life-threatening infections. The skin is one target tissue of HSV, and the question of how the virus overcomes the protective skin barrier and penetrates into the tissue to reach its receptors is still open. Previous studies analyzing entry into cells grown in vitro revealed nectin-1 and HVEM as HSV receptors. To explore the contributions of nectin-1 and HVEM to entry into a natural target tissue, we established an ex vivo infection model. Using nectin-1- or HVEM-deficient mice, we demonstrated the distinct involvement of nectin-1 and HVEM for HSV-1 entry into epidermis and characterized the internalization pathways. Such advances in understanding the involvement of receptors in tissue are essential preconditions for unraveling HSV invasion of skin, which in turn will allow the development of antiviral reagents.


Asunto(s)
Moléculas de Adhesión Celular/metabolismo , Herpesvirus Humano 1/fisiología , Interacciones Huésped-Patógeno , Queratinocitos/virología , Miembro 14 de Receptores del Factor de Necrosis Tumoral/metabolismo , Receptores Virales/metabolismo , Internalización del Virus , Animales , Ratones Endogámicos C57BL , Ratones Noqueados , Microscopía Electrónica de Transmisión , Nectinas , Piel/virología
7.
Am J Hum Genet ; 91(3): 565-71, 2012 Sep 07.
Artículo en Inglés | MEDLINE | ID: mdl-22901946

RESUMEN

Autozygosity mapping and clonal sequencing of an Omani family identified mutations in the uncharacterized gene, C4orf26, as a cause of recessive hypomineralized amelogenesis imperfecta (AI), a disease in which the formation of tooth enamel fails. Screening of a panel of 57 autosomal-recessive AI-affected families identified eight further families with loss-of-function mutations in C4orf26. C4orf26 encodes a putative extracellular matrix acidic phosphoprotein expressed in the enamel organ. A mineral nucleation assay showed that the protein's phosphorylated C terminus has the capacity to promote nucleation of hydroxyapatite, suggesting a possible function in enamel mineralization during amelogenesis.


Asunto(s)
Amelogénesis Imperfecta/genética , Proteínas del Tejido Nervioso/genética , Amelogénesis/genética , Esmalte Dental/metabolismo , Durapatita/metabolismo , Femenino , Humanos , Masculino , Mutación , Linaje
8.
Am J Hum Genet ; 88(5): 616-20, 2011 May 13.
Artículo en Inglés | MEDLINE | ID: mdl-21549343

RESUMEN

Amelogenesis imperfecta (AI) describes a clinically and genetically heterogeneous group of disorders of biomineralization resulting from failure of normal enamel formation. AI is found as an isolated entity or as part of a syndrome, and an autosomal-recessive syndrome associating AI and gingival hyperplasia was recently reported. Using whole-exome sequencing, we identified a homozygous nonsense mutation in exon 2 of FAM20A that was not present in the Single Nucleotide Polymorphism database (dbSNP), the 1000 Genomes database, or the Centre d'Etude du Polymorphisme Humain (CEPH) Diversity Panel. Expression analyses indicated that Fam20a is expressed in ameloblasts and gingivae, providing biological plausibility for mutations in FAM20A underlying the pathogenesis of this syndrome.


Asunto(s)
Amelogénesis Imperfecta/genética , Amelogénesis Imperfecta/patología , Proteínas del Esmalte Dental/genética , Hiperplasia Gingival/patología , Mutación , Ameloblastos/metabolismo , Cromosomas Humanos Par 17 , Exones , Regulación de la Expresión Génica , Heterogeneidad Genética , Homocigoto , Humanos , Linaje , Polimorfismo de Nucleótido Simple , Síndrome
9.
Hum Mol Genet ; 19(7): 1230-47, 2010 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-20067920

RESUMEN

Amelogenesis imperfecta (AI) describes a broad group of clinically and genetically heterogeneous inherited defects of dental enamel bio-mineralization. Despite identification of a number of genetic mutations underlying AI, the precise causal mechanisms have yet to be determined. Using a multi-disciplinary approach, we describe here a mis-sense mutation in the mouse Amelx gene resulting in a Y --> H substitution in the tri-tyrosyl domain of the enamel extracellular matrix protein amelogenin. The enamel in affected animals phenocopies human X-linked AI where similar mutations have been reported. Animals affected by the mutation have severe defects of enamel bio-mineralization associated with absence of full-length amelogenin protein in the developing enamel matrix, loss of ameloblast phenotype, increased ameloblast apoptosis and formation of multi-cellular masses. We present evidence to demonstrate that affected ameloblasts express but fail to secrete full-length amelogenin leading to engorgement of the endoplasmic reticulum/Golgi apparatus. Immunohistochemical analysis revealed accumulations of both amelogenin and ameloblastin in affected cells. Co-transfection of Ambn and mutant Amelx in a eukaryotic cell line also revealed intracellular abnormalities and increased cytotoxicity compared with cells singly transfected with wild-type Amelx, mutant Amelx or Ambn or co-transfected with both wild-type Amelx and Ambn. We hypothesize that intracellular protein-protein interactions mediated via the amelogenin tri-tyrosyl motif are a key mechanistic factor underpinning the molecular pathogenesis in this example of AI. This study therefore successfully links phenotype with underlying genetic lesion in a relevant murine model for human AI.


Asunto(s)
Amelogénesis Imperfecta/genética , Amelogenina/metabolismo , Proteínas del Esmalte Dental/metabolismo , Enfermedades Genéticas Ligadas al Cromosoma X/genética , Mutación Missense , Amelogenina/genética , Secuencia de Aminoácidos/genética , Animales , Supervivencia Celular , Esmalte Dental/patología , Proteínas del Esmalte Dental/genética , Células Epiteliales/fisiología , Femenino , Incisivo/metabolismo , Incisivo/patología , Masculino , Ratones , Ratones Mutantes , ARN Mensajero/metabolismo , Transfección
10.
Cells Tissues Organs ; 196(5): 420-30, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22759786

RESUMEN

Mutations in human and in mouse orthologous genes Amelx and Enam result in a diverse range of enamel defects. In this study we aimed to investigate the phenotype-genotype correlation between the mutants and the wild-type controls in mouse models of amelogenesis imperfecta using novel measurement approaches. Ten hemi-mandibles and incisors were dissected from each group of Amelx(WT), Amelx(X/Y64H), Amelx(Y/Y64H), Amelx(Y64H/Y64H), and Enam(WT), Enam(Rgsc395) heterozygous and Enam(Rgsc395) homozygous mice. Their macro-morphology, colour and micro-topography were assessed using bespoke 2D and 3D image analysis systems and customized colour and whiteness algorithms. The novel methods identified significant differences (p ≤ 0.05) between the Amelx groups for mandible and incisor size and enamel colour and between the Enam groups for incisor size and enamel colour. The Amelx(WT) mice had the largest mandibles and incisors, followed in descending order of size by the Amelx(X/Y64H), Amelx(Y/Y64H) and Amelx(Y64H/Y64H) mice. Within the Enam groups the Enam(WT) incisors were largest and the Enam(Rgsc395) heterozygous mice were smallest. The effect on tooth morphology was also reflected by the severity of the enamel defects in the colour and whiteness assessment. Amelogenin affected mandible morphology and incisor enamel formation, while enamelin only affected incisors, supporting the multifunctional role of amelogenin. The enamelin mutation was associated with earlier forming enamel defects. The study supported the critical involvement of amelogenin and enamelin in enamel mineralization.


Asunto(s)
Amelogénesis Imperfecta/etiología , Amelogénesis Imperfecta/genética , Amelogénesis Imperfecta/patología , Amelogenina/genética , Animales , Proteínas de la Matriz Extracelular , Genotipo , Ratones , Mutación , Fenotipo , Proteínas/genética
11.
Stat Med ; 30(5): 505-14, 2011 Feb 28.
Artículo en Inglés | MEDLINE | ID: mdl-21294147

RESUMEN

Random-digit-dial telephone surveys are experiencing both declining response rates and increasing under-coverage due to the prevalence of households that substitute a wireless telephone for their residential landline telephone. These changes increase the potential for bias in survey estimates and heighten the need for survey researchers to evaluate the sources and magnitudes of potential bias. We apply a Monte Carlo simulation-based approach to assess bias in the NIS, a land-line telephone survey of 19-35 month-old children used to obtain national vaccination coverage estimates. We develop a model describing the survey stages at which component nonsampling error may be introduced due to nonresponse and under-coverage. We use that model and components of error estimated in special studies to quantify the extent to which noncoverage and nonresponse may bias the vaccination coverage estimates obtained from the NIS and present a distribution of the total survey error. Results indicated that the total error followed a normal distribution with mean of 1.72 per cent(95 per cent CI: 1.71, 1.74 per cent) and final adjusted survey weights corrected for this error. Although small, the largest contributor to error in terms of magnitude was nonresponse of immunization providers. The total error was most sensitive to declines in coverage due to cell phone only households. These results indicate that, while response rates and coverage may be declining, total survey error is quite small. Since response rates have historically been used to proxy for total survey error, the finding that these rates do not accurately reflect bias is important for evaluation of survey data. Published in 2011 by John Wiley & Sons, Ltd.


Asunto(s)
Sesgo , Encuestas Epidemiológicas/métodos , Encuestas Epidemiológicas/estadística & datos numéricos , Programas de Inmunización , Modelos Estadísticos , Vacunación/estadística & datos numéricos , Algoritmos , Teléfono Celular/estadística & datos numéricos , Preescolar , Simulación por Computador , Recolección de Datos/estadística & datos numéricos , Personal de Salud/estadística & datos numéricos , Humanos , Lactante , Entrevistas como Asunto , Método de Montecarlo , Distribución Normal , Consentimiento Paterno/estadística & datos numéricos , Estados Unidos
12.
Eur J Oral Sci ; 119 Suppl 1: 345-50, 2011 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-22243266

RESUMEN

Enamelin is an extracellular enamel matrix protein essential for normal amelogenesis. After secretion, porcine enamelin is processed to generate several enamelin-degradation products. The cumulative 32-kDa enamelin is the most abundant enamelin present, and various roles for this molecule have been suggested. However, the proteolytic cleavage sites in porcine enamelin that generate the 32-kDa enamelin are not conserved across species, and the 32-kDa enamelin analogue may not be present in all species. To explore this we studied rat enamelin biochemistry using western blotting with anti-peptide IgGs to porcine 32-kDa enamelin and to the putative rat 32-kDa enamelin analogue. The dominant enamelins in secretory-stage rat enamel migrated at around 60-70 kDa. In contrast, the dominant enamelins in secretory-stage porcine enamel migrated at around 32 kDa. In contrast, secretory-stage porcine-enamel enamelins were dominated by the 32-kDa enamelin. Rat enamelin was completely removed from maturation-stage enamel without any accumulation of 32-kDa enamelin. We suggest that a discrete 32-kDa enamelin is not essential for normal amelogenesis in all species, and in pig it may be a processing product of a larger functional enamelin molecule. The pig may be an atypical model in terms of enamelin biochemistry and function, and caution should be exercised when assigning functional roles to the 32-kDa enamelin as a discrete enamel matrix entity.


Asunto(s)
Proteínas del Esmalte Dental/química , Amelogénesis , Animales , Proteínas del Esmalte Dental/genética , Proteínas del Esmalte Dental/metabolismo , Humanos , Masculino , Ratones , Peso Molecular , Fragmentos de Péptidos/química , Fragmentos de Péptidos/fisiología , Procesamiento Proteico-Postraduccional , Proteolisis , Ratas , Ratas Wistar , Homología de Secuencia de Aminoácido , Especificidad de la Especie , Sus scrofa
13.
Hum Mol Genet ; 17(22): 3509-20, 2008 Nov 15.
Artículo en Inglés | MEDLINE | ID: mdl-18703497

RESUMEN

Nectin-1 is a member of a sub-family of immunoglobulin-like adhesion molecules and a component of adherens junctions. In the current study, we have shown that mice lacking nectin-1 exhibit defective enamel formation in their incisor teeth. Although the incisors of nectin-1-null mice were hypomineralized, the protein composition of the enamel matrix was unaltered. While strong immunostaining for nectin-1 was observed at the interface between the maturation-stage ameloblasts and the underlying cells of the stratum intermedium (SI), its absence in nectin-1-null mice correlated with separation of the cell layers at this interface. Numerous, large desmosomes were present at this interface in wild-type mice; however, where adhesion persisted in the mutant mice, the desmosomes were smaller and less numerous. Nectins have been shown to regulate tight junction formation; however, this is the first report showing that they may also participate in the regulation of desmosome assembly. Importantly, our results show that integrity of the SI-ameloblast interface is essential for normal enamel mineralization.


Asunto(s)
Amelogénesis , Moléculas de Adhesión Celular/metabolismo , Esmalte Dental/metabolismo , Desmosomas/metabolismo , Órgano del Esmalte/metabolismo , Uniones Adherentes/metabolismo , Ameloblastos/citología , Ameloblastos/fisiología , Animales , Apoptosis , Adhesión Celular , Moléculas de Adhesión Celular/genética , Proliferación Celular , Esmalte Dental/química , Proteínas del Esmalte Dental/análisis , Desmoplaquinas/análisis , Desmosomas/ultraestructura , Órgano del Esmalte/química , Órgano del Esmalte/citología , Compuestos Férricos/metabolismo , Inmunohistoquímica , Incisivo/anomalías , Incisivo/diagnóstico por imagen , Ratones , Ratones Transgénicos , Microftalmía , Microscopía Electrónica de Transmisión , Nectinas , Radiografía , Uniones Estrechas/metabolismo , Uniones Estrechas/ultraestructura
14.
PLoS Negl Trop Dis ; 12(6): e0006568, 2018 06.
Artículo en Inglés | MEDLINE | ID: mdl-29889847

RESUMEN

Populations of Aedes aegypti naturally exhibit variable susceptibility to dengue viruses. This natural variation can be impacted by nutritional stress resulting from larval-stage crowding, indicating the influence of environment components on the adult mosquito immune response. In particular, larval crowding was previously shown to reduce the susceptibility of adult females of a Trinidad field isolate of A. aegypti to the dengue serotype 2 (JAM1409) virus. Here, we present the first whole transcriptome study to address the impact of environmental stress on A. aegypti response to dengue virus. We examined expression profiles of adult females resulting from crowded and optimum reared larvae from the same Trinidad isolate at two critical early time points-3 and 18 hours post dengue virus infected blood meal. We exposed specimens to either a dengue or naïve blood meal, and then characterized the response in ten gene co-expression modules based on their transcriptional associations with environmental stress and time. We further analyzed the top 30 hub or master regulatory genes in each of the modules, and validated our results via qRT-PCR. These hub genes reveal which functions are critical to the mechanisms that confer dengue virus refractoriness or susceptibility to stress conditioned A. aegypti, as well as the time points at which they are most important.


Asunto(s)
Aedes/genética , Aedes/virología , Virus del Dengue/fisiología , Mosquitos Vectores/virología , Estrés Fisiológico/genética , Transcriptoma , Aedes/fisiología , Animales , Aglomeración , Dengue/transmisión , Virus del Dengue/aislamiento & purificación , Femenino , Expresión Génica , Interacciones Huésped-Patógeno , Larva/genética , Larva/fisiología , Larva/virología , Serogrupo
15.
J Clin Invest ; 112(9): 1351-60, 2003 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-14597761

RESUMEN

The mitochondrial genome encodes 13 essential subunits of the respiratory chain and has remarkable genetics based on uniparental inheritance. Within human populations, the mitochondrial genome has a high rate of sequence divergence with multiple polymorphic variants and thus has played a major role in examining the evolutionary history of our species. In recent years it has also become apparent that pathogenic mitochondrial DNA (mtDNA) mutations play an important role in neurological and other diseases. Patients harbor many different mtDNA mutations, some of which are mtDNA mutations, some of which are inherited, but others that seem to be sporadic. It has also been suggested that mtDNA mutations play a role in aging and cancer, but the evidence for a causative role in these conditions is less clear. The accumulated data would suggest, however, that mtDNA mutations occur on a frequent basis. In this article we describe a new phenomenon: the accumulation of mtDNA mutations in human colonic crypt stem cells that result in a significant biochemical defect in their progeny. These studies have important consequences not only for understanding of the finding of mtDNA mutations in aging tissues and tumors, but also for determining the frequency of mtDNA mutations within a cell.


Asunto(s)
Colon/citología , ADN Mitocondrial/genética , Mutación , Células Madre/metabolismo , Anciano , Anciano de 80 o más Años , Colon/metabolismo , Replicación del ADN , Transporte de Electrón , Humanos , Matemática , Persona de Mediana Edad , Modelos Genéticos
16.
Brain ; 129(Pt 12): 3391-401, 2006 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-17085458

RESUMEN

At present there are limited therapeutic interventions for patients with mitochondrial myopathies. Exercise training has been suggested as an approach to improve physical capacity and quality of life but it is uncertain whether it offers a safe and effective treatment for patients with heteroplasmic mitochondrial DNA (mtDNA) mutations. The objectives of this study were to assess the effects of exercise training and detraining in eight patients with single, large-scale mtDNA deletions to determine: (i) the efficacy and safety of endurance training (14 weeks) in this patient population; (ii) to determine the effect of more prolonged (total of 28 weeks) exercise training upon muscle and cardiovascular function and (iii) to evaluate the effect of discontinued training (14 weeks) upon muscle and cardiovascular function. Our results show that: (i) 14 weeks of exercise training significantly improved tolerance of submaximal exercise and peak capacity for work, oxygen utilization and skeletal muscle oxygen extraction with no change in the level of deleted mtDNA; (ii) continued training for an additional 14 weeks maintained these beneficial adaptations; (iii) the cessation of training (detraining) resulted in loss of physiological adaptation to baseline capacity with no overall change in mutation load. Patients' self assessment of quality of life as measured by the SF-36 questionnaire improved with training and declined with detraining. Whilst our findings of beneficial effects of training on physiological outcome and quality of life without increases in the percentage of deleted mtDNA are encouraging, we did not observe changes in mtDNA copy number. Therefore there remains a need for longer term studies to confirm that endurance exercise is a safe and effective treatment for patients with mitochondrial myopathies. The effects of detraining clearly implicate physical inactivity as an important mechanism in reducing exercise capacity and quality of life in patients with mitochondrial myopathy.


Asunto(s)
ADN Mitocondrial/genética , Terapia por Ejercicio/métodos , Eliminación de Gen , Miopatías Mitocondriales/terapia , Adaptación Fisiológica/fisiología , Adulto , Complejo IV de Transporte de Electrones/metabolismo , Prueba de Esfuerzo/métodos , Femenino , Frecuencia Cardíaca/fisiología , Humanos , Lactatos/sangre , Masculino , Persona de Mediana Edad , Miopatías Mitocondriales/genética , Miopatías Mitocondriales/fisiopatología , Fibras Musculares Esqueléticas/enzimología , Músculo Esquelético/metabolismo , Oxígeno/fisiología , Cooperación del Paciente , Resistencia Física/fisiología , Esfuerzo Físico/fisiología , Reacción en Cadena de la Polimerasa/métodos , Calidad de Vida , Resultado del Tratamiento
17.
Front Physiol ; 8: 653, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28951722

RESUMEN

During the secretory phase of their life-cycle, ameloblasts are highly specialized secretory cells whose role is to elaborate an extracellular matrix that ultimately confers both form and function to dental enamel, the most highly mineralized of all mammalian tissues. In common with many other "professional" secretory cells, ameloblasts employ the unfolded protein response (UPR) to help them cope with the large secretory cargo of extracellular matrix proteins transiting their ER (endoplasmic reticulum)/Golgi complex and so minimize ER stress. However, the UPR is a double-edged sword, and, in cases where ER stress is severe and prolonged, the UPR switches from pro-survival to pro-apoptotic mode. The purpose of this review is to consider the role of the ameloblast UPR in the biology and pathology of amelogenesis; specifically in respect of amelogenesis imperfecta (AI) and fluorosis. Some forms of AI appear to correspond to classic proteopathies, where pathological intra-cellular accumulations of protein tip the UPR toward apoptosis. Fluorosis also involves the UPR and, while not of itself a classic proteopathic disease, shares some common elements through the involvement of the UPR. The possibility of therapeutic intervention by pharmacological modulation of the UPR in AI and fluorosis is also discussed.

18.
Sci Rep ; 6: 33892, 2016 Sep 27.
Artículo en Inglés | MEDLINE | ID: mdl-27670849

RESUMEN

Single-cell RNA-Sequencing (scRNA-Seq) is a revolutionary technique for discovering and describing cell types in heterogeneous tissues, yet its measurement of expression often suffers from large systematic bias. A major source of this bias is the cell cycle, which introduces large within-cell-type heterogeneity that can obscure the differences in expression between cell types. The current method for removing the cell-cycle effect is unable to effectively identify this effect and has a high risk of removing other biological components of interest, compromising downstream analysis. We present ccRemover, a new method that reliably identifies the cell-cycle effect and removes it. ccRemover preserves other biological signals of interest in the data and thus can serve as an important pre-processing step for many scRNA-Seq data analyses. The effectiveness of ccRemover is demonstrated using simulation data and three real scRNA-Seq datasets, where it boosts the performance of existing clustering algorithms in distinguishing between cell types.

19.
J Am Coll Cardiol ; 41(10): 1786-96, 2003 May 21.
Artículo en Inglés | MEDLINE | ID: mdl-12767666

RESUMEN

OBJECTIVES: The purpose of this study was to understand the clinical and molecular features of familial hypertrophic cardiomyopathy (HCM) in which a mitochondrial abnormality was strongly suspected. BACKGROUND: Defects of the mitochondrial genome are responsible for a heterogeneous group of clinical disorders, including cardiomyopathy. The majority of pathogenic mutations are heteroplasmic, with mutated and wild-type mitochondrial deoxyribonucleic acid (mtDNA) coexisting within the same cell. Homoplasmic mutations (present in every copy of the genome within the cell) present a difficult challenge in terms of diagnosis and assigning pathogenicity, as human mtDNA is highly polymorphic. METHODS: A detailed clinical, histochemical, biochemical, and molecular genetic analysis was performed on two families with HCM to investigate the underlying mitochondrial defect. RESULTS: Cardiac tissue from an affected child in the presenting family exhibited severe deficiencies of mitochondrial respiratory chain enzymes, whereas histochemical and biochemical studies of the skeletal muscle were normal. Mitochondrial DNA sequencing revealed an A4300G transition in the mitochondrial transfer ribonucleic acid (tRNA)(Ile) gene, which was shown to be homoplasmic by polymerase chain reaction/restriction fragment length polymorphism analysis in all samples from affected individuals and other maternal relatives. In a second family, previously reported as heteroplasmic for this base substitution, the mutation has subsequently been shown to be homoplasmic. The pathogenic role for this mutation was confirmed by high-resolution Northern blot analysis of heart tissue from both families, revealing very low steady-state levels of the mature mitochondrial tRNA(Ile). CONCLUSIONS: This report documents, for the first time, that a homoplasmic mitochondrial tRNA mutation may cause maternally inherited HCM. It highlights the significant contribution that homoplasmic mitochondrial tRNA substitutions may play in the development of cardiac disease. A restriction of the biochemical defect to the affected tissue has important implications for the screening of patients with cardiomyopathy for mitochondrial disease.


Asunto(s)
Cardiomiopatía Hipertrófica/genética , Mitocondrias Cardíacas/genética , Mutación Puntual , ARN de Transferencia de Isoleucina/genética , ARN/genética , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Niño , Preescolar , ADN Mitocondrial/genética , Transporte de Electrón , Humanos , Lactante , Masculino , Persona de Mediana Edad , Mitocondrias Cardíacas/metabolismo , Mitocondrias Musculares/genética , Linaje , Reacción en Cadena de la Polimerasa , Polimorfismo de Longitud del Fragmento de Restricción , ARN Mitocondrial , Análisis de Secuencia de ADN
20.
Surv Pract ; 8(1)2015 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-29675339

RESUMEN

The value of telephone surveys for assessing effects at geographic areas is impacted by increasing wireless telephone use. Highly accurate landline samples may be drawn for national, state, county, or even smaller areas; however, wireless samples have less geographic precision. This requires additional data collection effort and screening costs in order to ensure the appropriate geographic area is surveyed. In this paper, we examine the accuracy of wireless sample frame from the 2010-2011 National Flu Surveys. We illustrate differences and variations in wireless sampling accuracy for different geographic areas, focusing on variability by area in placement of wire centers related to residences. Our results suggest that the accuracy of wireless sampling may be dependent on differences in geographic areas with the accuracy of wireless sampling decreasing as the level of geographic aggregation gets more specific; landline accuracy remains relatively stable regardless of geographic specificity. To explain this phenomenon, we examine patterns of geographic dispersion of wireless telephone numbers related to telephone switch centers and geographic area. Based on the evidence from these surveys we present several options to estimate the geographic specificity of an area prior to sampling.

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