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1.
Appl Environ Microbiol ; 87(1)2020 12 17.
Artículo en Inglés | MEDLINE | ID: mdl-33097513

RESUMEN

The atmosphere contains diverse living microbes, of which the heterotrophic community has been the best studied. Microbes with other trophic modes, such as photoautotrophy, have received much less attention. In this study, culture-independent and dependent methods were used to examine the presence and diversity of oxygenic photoautotrophic microbes in clouds and rain collected at or around puy de Dôme Mountain, central France. Cloud water was collected from the summit of puy de Dôme (1,465 m above sea level [a.s.l.]) for cultivation and metagenomic analysis. Cyanobacteria, diatoms, green algae, and other oxygenic photoautotrophs were found to be recurrent members of clouds, while green algae affiliated with the Chlorellaceae were successfully cultured from three different clouds. Additionally, rain samples were collected below the mountain from Opme meteorological station (680 m a.s.l.). The abundance of chlorophyll a-containing cells and the diversity of cyanobacteria and green algae in rain were assessed by flow cytometry and amplicon sequencing. The corresponding downward flux of chlorophyll a-containing organisms to the ground, entering surface ecosystems with rain, varied with time and was estimated to be between ∼1 and >300 cells cm-2 day-1 during the sampling period. Besides abundant pollen from Pinales and Rosales, cyanobacteria of the Chroococcidiopsidales and green algae of the Trebouxiales were dominant in rain samples. Certain members of these taxa are known to be ubiquitous and stress tolerant and could use the atmosphere for dispersal. Overall, our results indicate that the atmosphere carries diverse, viable oxygenic photoautotrophic microbes and acts as a dispersal vector for this microbial guild.IMPORTANCE Information regarding the diversity and abundance of oxygenic photoautotrophs in the atmosphere is limited. More information from diverse locations is needed. These airborne organisms could have important impacts upon atmospheric processes and on the ecosystems they enter after deposition. Oxygenic photoautotrophic microbes are integral to ecosystem functioning, and some have the potential to affect human health. A better understanding of the diversity and the movements of these aeolian dispersed organisms is needed to understand their ecology, as well as how they could affect ecosystems and human health.


Asunto(s)
Atmósfera , Chlorophyta , Cianobacterias/aislamiento & purificación , Diatomeas/aislamiento & purificación , Lluvia/microbiología , Francia , Microbiota
2.
J Environ Qual ; 47(2): 254-262, 2018 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-29634809

RESUMEN

Chloromethane (CHCl, methyl chloride) is the most abundant volatile halocarbon in the atmosphere and involved in stratospheric ozone depletion. The global CHCl budget, and especially the CHCl sink from microbial degradation in soil, still involves large uncertainties. These may potentially be resolved by a combination of stable isotope analysis and bacterial diversity studies. We determined the stable isotope fractionation of CHCl hydrogen and carbon and investigated bacterial diversity during CHCl degradation in three soils with different properties (forest, grassland, and agricultural soils) and at different temperatures and headspace mixing ratios of CHCl. The extent of chloromethane degradation decreased in the order forest > grassland > agricultural soil. Rates ranged from 0.7 to 2.5 µg g dry wt. d for forest soil, from 0.1 to 0.9 µg g dry wt. d for grassland soil, and from 0.1 to 0.4 µg g dry wt. d for agricultural soil and increased with increasing temperature and CHCl supplementation. The measured mean stable hydrogen enrichment factor of CHCl of -50 ± 13‰ was unaffected by temperature, mixing ratio, or soil type. In contrast, the stable carbon enrichment factor depended on CHCl degradation rates and ranged from -38 to -11‰. Bacterial community composition correlated with soil properties was independent from CHCl degradation or isotope enrichment. Nevertheless, increased abundance after CHCl incubation was observed in 21 bacterial operational taxonomical units (OTUs at the 97% 16S RNA sequence identity level). This suggests that some of these bacterial taxa, although not previously associated with CHCl degradation, may play a role in the microbial CHCl sink in soil.


Asunto(s)
Cloruro de Metilo/química , Microbiología del Suelo , Agricultura , Isótopos , Suelo
3.
Metabolomics ; 14(1): 11, 2017 12 04.
Artículo en Inglés | MEDLINE | ID: mdl-30830325

RESUMEN

INTRODUCTION: Active microorganisms have been recently discovered in clouds, thus demonstrating the capacity of microorganisms to exist in harsh environments, including exposure to UV and oxidants, osmotic and cold shocks, etc. It is important to understand how microorganisms respond to and survive such stresses at the metabolic level. OBJECTIVES: The objective of this work is to assess metabolome modulation in a strain of Pseudomonas syringae isolated from cloud water and facing temperature downshift from 17 to 5 °C by identifying key molecules and pathways of the response/adaptation to cold shock. METHODS: Bacterial extracts from suspensions of cells grown at 17 °C and further incubated in microcosms at 5 and 17 °C to mimic cloud conditions were analysed by combining LC-MS and NMR; the results were evaluated in comparison to similar suspensions kept at constant temperature. The differences in the metabolome profiles were deciphered using multivariate statistics (PLS-DA). RESULTS: Key cold shock biomarkers were observed, including cryoprotectants (trehalose, glucose, glycerol, carnitine, glutamate), antioxidants (glutathione and carnitine) and their precursors, alkaloids (bellendine and slaframine) and metabolites involved in energy metabolism (ATP, carbohydrates). Furthermore, new short peptides (nine dipeptides and a tetrapeptide) were found that have no known function. CONCLUSIONS: This study shows that in response to cold temperatures, Pseudomonas syringae PDD-32b-74 demonstrates numerous metabolism modifications to counteract the impacts of low temperatures.


Asunto(s)
Respuesta al Choque por Frío/fisiología , Metabolómica/métodos , Pseudomonas syringae/metabolismo , Adaptación Fisiológica/fisiología , Alcaloides/metabolismo , Antioxidantes/metabolismo , Frío , Crioprotectores/metabolismo , Sistemas de Administración de Bases de Datos , Metabolismo Energético/fisiología , Espectroscopía de Resonancia Magnética/métodos , Espectrometría de Masas/métodos , Estrés Oxidativo/fisiología , Microbiología del Agua
4.
Environ Sci Technol ; 50(17): 9324-32, 2016 Sep 06.
Artículo en Inglés | MEDLINE | ID: mdl-27487120

RESUMEN

In the present work, the photoreactivity of a mixture of iron(III)­pyoverdin (Fe(III)­Pyo) complexes was investigated under simulated cloud conditions. Pyoverdins are expected to complex ferric ions naturally present in cloudwater, thus modifying their availability and photoreactivity. The spectroscopic properties and photoreactivity of Fe(III)-Pyo were investigated, with particular attention to their fate under solar irradiation, also studied through simulations. The photolysis of the Fe(III)­Pyo complex leads to the generation of Fe(II), with rates of formation (RFe(II)f) of 6.98 and 3.96 × 10­9 M s­1 at pH 4.0 and 6.0, respectively. Interestingly, acetate formation was observed during the iron-complex photolysis, suggesting that fragmentation can occur after the ligand-to-metal charge transfer (LMCT) via a complex reaction mechanism. Moreover, photogenerated Fe(II) represent an important source of hydroxyl radical via the Fenton reaction in cloudwater. This reactivity might be relevant for the estimation of the rates of formation and steady-state concentrations of the hydroxyl radical by cloud chemistry models and for organic matter speciation in the cloud aqueous phase. In fact, the conventional models, which describe the iron photoreactivity in terms of iron­aqua and oxalate complexes, are not in accordance with our results.


Asunto(s)
Hierro , Fotólisis , Sideróforos , Compuestos Férricos , Radical Hidroxilo , Oxalatos
5.
Environ Sci Technol ; 50(17): 9315-23, 2016 09 06.
Artículo en Inglés | MEDLINE | ID: mdl-27479540

RESUMEN

A total of 450 bacteria and yeast strains isolated from cloud waters sampled at the puy de Dôme station in France (1465 m) were screened for their ability to produce siderophores. To achieve this, a high-throughput method in 96-well plates was adapted from the CAS (chrome azurol S) method. Notably, 42% of the isolates were siderophore producers. This production was examined according to the phyla of the tested strains and the type of chelating functional groups (i.e., hydroxamate, catechol, and mixed type). The most active bacteria in the clouds belong to the γ-Proteobacteria class, among which the Pseudomonas genus is the most frequently encountered. γ-Proteobacteria are produced in the majority of mixed function siderophores, such as pyoverdines, which bear a photoactive group. Finally, siderophore production was shown to vary with the origin of the air masses. The organic speciation of iron remains largely unknown in warm clouds. Our results suggest that siderophores could partly chelate Fe(III) in cloud waters and thus potentially impact the chemistry of the atmospheric aqueous phase.


Asunto(s)
Compuestos Férricos , Sideróforos/química , Hierro , Quelantes del Hierro , Pseudomonas
6.
Proc Natl Acad Sci U S A ; 110(2): 559-64, 2013 Jan 08.
Artículo en Inglés | MEDLINE | ID: mdl-23263871

RESUMEN

Within cloud water, microorganisms are metabolically active and, thus, are expected to contribute to the atmospheric chemistry. This article investigates the interactions between microorganisms and the reactive oxygenated species that are present in cloud water because these chemical compounds drive the oxidant capacity of the cloud system. Real cloud water samples with contrasting features (marine, continental, and urban) were taken from the puy de Dôme mountain (France). The samples exhibited a high microbial biodiversity and complex chemical composition. The media were incubated in the dark and subjected to UV radiation in specifically designed photo-bioreactors. The concentrations of H(2)O(2), organic compounds, and the ATP/ADP ratio were monitored during the incubation period. The microorganisms remained metabolically active in the presence of ()OH radicals that were photo-produced from H(2)O(2). This oxidant and major carbon compounds (formaldehyde and carboxylic acids) were biodegraded by the endogenous microflora. This work suggests that microorganisms could play a double role in atmospheric chemistry; first, they could directly metabolize organic carbon species, and second, they could reduce the available source of radicals through their oxidative metabolism. Consequently, molecules such as H(2)O(2) would no longer be available for photochemical or other chemical reactions, which would decrease the cloud oxidant capacity.


Asunto(s)
Atmósfera/química , Bacterias/metabolismo , Biodiversidad , Carbono/metabolismo , Agua Dulce/microbiología , Vapor/análisis , Levaduras/metabolismo , Adenosina Difosfato/análisis , Adenosina Trifosfato/análisis , Reactores Biológicos , Ácidos Carboxílicos/metabolismo , Conductividad Eléctrica , Formaldehído/metabolismo , Francia , Peróxido de Hidrógeno/análisis , Concentración de Iones de Hidrógeno , Compuestos Orgánicos/análisis , Oxidación-Reducción
7.
Environ Sci Technol ; 48(24): 14238-47, 2014 Dec 16.
Artículo en Inglés | MEDLINE | ID: mdl-25390890

RESUMEN

The ability of Bacillus sp. 3B6, a bacterial strain isolated from cloudwaters, to biotransform saccharides present in the atmosphere was evaluated using in situ 1D and 2D NMR spectroscopy. Bacillus is one of the genera most frequently described in the air and in atmospheric waters. Sugars present in these environments have a biogenic origin; they include alditols, monosaccharides, disaccharides, oligosaccharides, and polysaccharides. Bacillus sp. 3B6 was able to efficiently metabolize sugars, which could thus provide sources of energy for this bacterium and allow it to live and to be metabolically active in warm clouds. In addition, a number of these saccharides (L-arabitol, D-fructose, sucrose, D-glucose, cellotetraose, cellulose, and starch) were transformed to EPSs (exopolymeric substances). We have clearly identified the structure of two EPSs as 1,6-α-galactan and partially acetylated polyethylene glycol. 1,6-α-Galactan is a newly described polymer. The production of EPSs might protect this bacterium under hostile cloud environment conditions, including low nutrient availability, cold temperature and freeze-thaw processes, UV and radical exposure, and evaporation-condensation processes and thus desiccation and osmolarity changes. EPSs could also have a potential role in atmospheric processes because they can be considered as secondary organic aerosols and efficient cloud condensation nuclei.


Asunto(s)
Bacillus/metabolismo , Metabolismo de los Hidratos de Carbono/fisiología , Carbohidratos/química , Atmósfera , Bacillus/citología , Bacillus/fisiología , Biotransformación , Microbiología Ambiental , Polímeros/química , Polímeros/metabolismo
8.
Carbohydr Res ; 529: 108852, 2023 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-37224730

RESUMEN

Wild blackthorn berries represent an unexplored area in terms of the characterization of the natural biologically active polysaccharide complexes they contain. The antioxidant active fraction extracted from wild blackthorn fruits by hot water extraction (Hw) was subjected to ion-exchange chromatography and yielded six fractions by successive elution with salts. The purified fractions differed in the content of neutral sugars, uronic acids, proteins and phenolics. About 62% of the applied material was recovered from the column, with a higher yield of the fractions eluted with 0.25 M NaCl. Based on the sugar composition of the eluted fractions, several polysaccharide types were observed. The dominant components of Hw are the fractions eluted with 0.25 M NaCl (∼70%), which represent highly esterified homogalacturonan, containing up to 70-80% of galacturonic acids with a low content of rhamnogalacturonan associated with arabinan, galactan or arabinogalactan side chains, but no phenolics. Further, a dark brown polysaccharide material with a yield of ∼17% and with a high content of phenolic compounds, was eluted with alkali (1.0 M NaOH). It mainly represents an acidic arabinogalactan.


Asunto(s)
Polisacáridos , Prunus , Prunus/química , Polisacáridos/química , Polisacáridos/aislamiento & purificación , Frutas/química , Fraccionamiento Químico , Agua/química
9.
Sci Total Environ ; 900: 165698, 2023 Nov 20.
Artículo en Inglés | MEDLINE | ID: mdl-37499838

RESUMEN

Roadway particles (RP) that can be collected with on-vehicle system, consist of a mixture of Tire and road wear particles (TRWP) with other traffic-derived particles (exhaust or non-exhaust) and/or biogenic compounds and represent a significant source of xenobiotics, susceptible to reach the different environmental compartments. The study of the RP fate is thus a major challenge to tackle in order to understand their degradation and impact. They offer a variety of carbon sources potentially usable by microorganisms, ranging from the tire-derived plasticizers, vulcanizing agents, protective agents and their transformation products, to other traffic, road and environmental-derived contaminants. A multi-analytical approach was implemented to characterize RP and study their biodegradation. Kinetics of RP extractions were monitored during 21 days in water, methanol, acetone and chloroform to identify leaching and extractable compounds and monitor the particle composition. The results confirmed that hundreds of readily leachable chemicals can be extracted from RP directly into water according to a dynamic process with time while additional poorly soluble compounds remain in the particles. Mass spectrometry (LC-HRMS and GC-MS) allowed us to propose 296 putative compounds using an extensive rubber database. The capacity of 6 bacterial strains, belonging to Rhodococcus, Pseudomonas and Streptomyces genera, to biodegrade RP was then evaluated over 14 days of incubation. The selected strains were able to grow on RP using various substrates. Elastomer monitoring by 1H NMR revealed a significant 12 % decrease of the extractable SBR fraction when the particles were incubated with Rhodococcus ruber. After incubation, the biodegradation of 171 compounds among leachable and extractable compounds was evaluated. Fatty acids and alkanes from rubber plasticizers and paraffin waxes were the most degraded putative compounds by the six strains tested, reaching 75 % of biodegradation for some of them.


Asunto(s)
Plastificantes , Goma , Plastificantes/análisis , Emisiones de Vehículos/análisis , Cromatografía de Gases y Espectrometría de Masas , Agua
10.
Sci Total Environ ; 829: 154642, 2022 Jul 10.
Artículo en Inglés | MEDLINE | ID: mdl-35306063

RESUMEN

Iron (Fe) plays a dual role in atmospheric chemistry: it is involved in chemical and photochemical reactivity and serves as a micronutrient for microorganisms that have recently been shown to produce strong organic ligands. These ligands control the reactivity, mobility, solubility and speciation of Fe, which have a potential impact on Fe bioavailability and cloud water oxidant capacity. In this work, the concentrations of Fe-binding ligands and the conditional stability constants were experimentally measured for the first time by Competitive Ligand Exchange-Adsorptive Cathodic Stripping Voltammetry (CLE-ACSV) technique in cloud water samples collected at puy de Dôme (France). The conditional stability constants, which indicate the strength of the Fe-ligand complexes, are higher than those considered until now in cloud chemistry (mainly Fe-oxalate). To understand the effect of Fe complexation on cloud water reactivity, we used the CLEPS cloud chemistry model. According to the model results, we found that Fe complexation impacts the hydroxyl radical formation rate: contrary to our expectations, Fe complexation by natural organic ligands led to an increase in hydroxyl radical production. These findings have important impacts on cloud chemistry and the global iron cycle.


Asunto(s)
Oxidantes , Agua , Quelantes , Radical Hidroxilo , Hierro/química , Ligandos
11.
Antibiotics (Basel) ; 11(7)2022 Jul 19.
Artículo en Inglés | MEDLINE | ID: mdl-35884228

RESUMEN

Antimicrobial resistance (AMR) is continuing to grow across the world. Though often thought of as a mostly public health issue, AMR is also a major agricultural and environmental problem. As such, many researchers refer to it as the preeminent One Health issue. Aerial transport of antimicrobial-resistant bacteria via bioaerosols is still poorly understood. Recent work has highlighted the presence of antibiotic resistance genes in bioaerosols. Emissions of AMR bacteria and genes have been detected from various sources, including wastewater treatment plants, hospitals, and agricultural practices; however, their impacts on the broader environment are poorly understood. Contextualizing the roles of bioaerosols in the dissemination of AMR necessitates a multidisciplinary approach. Environmental factors, industrial and medical practices, as well as ecological principles influence the aerial dissemination of resistant bacteria. This article introduces an ongoing project assessing the presence and fate of AMR in bioaerosols across Canada. Its various sub-studies include the assessment of the emissions of antibiotic resistance genes from many agricultural practices, their long-distance transport, new integrative methods of assessment, and the creation of dissemination models over short and long distances. Results from sub-studies are beginning to be published. Consequently, this paper explains the background behind the development of the various sub-studies and highlight their shared aspects.

12.
Appl Environ Microbiol ; 76(1): 23-9, 2010 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19854931

RESUMEN

The biodegradation of the most abundant atmospheric organic C1 to C4 compounds (formate, acetate, lactate, succinate) by five selected representative microbial strains (three Pseudomonas strains, one Sphingomonas strain, and one yeast strain) isolated from cloud water at the puy de Dôme has been studied. Experiments were first conducted under model conditions and consisted of a pure strain incubated in the presence of a single organic compound. Kinetics showed the ability of the isolates to degrade atmospheric compounds at temperatures representative of low-altitude clouds (5 degrees C and 17 degrees C). Then, to provide data that can be extrapolated to real situations, microcosm experiments were developed. A solution that chemically mimicked the composition of cloud water was used as an incubation medium for microbial strains. Under these conditions, we determined that microbial activity would significantly contribute to the degradation of formate, acetate, and succinate in cloud water at 5 degrees C and 17 degrees C, with lifetimes of 0.4 to 69.1 days. Compared with the reactivity involving free radicals, our results suggest that biological activity drives the oxidation of carbonaceous compounds during the night (90 to 99%), while its contribution accounts for 2 to 37% of the reactivity during the day, competing with photochemistry.


Asunto(s)
Microbiología del Aire , Atmósfera/química , Carbono/metabolismo , Pseudomonas/metabolismo , Sphingomonas/metabolismo , Levaduras/metabolismo , Biodegradación Ambiental , Pseudomonas/aislamiento & purificación , Sphingomonas/aislamiento & purificación , Temperatura , Levaduras/aislamiento & purificación
13.
Appl Microbiol Biotechnol ; 83(3): 425-33, 2009 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-19184595

RESUMEN

Extracellular culture fluid of Fibrobacter succinogenes S85 grown on glucose, cellobiose, cellulose or wheat straw was analysed by 2D-NMR spectroscopy. Cellodextrins did not accumulate in the culture medium of cells grown on cellulose or straw. Maltodextrins and maltodextrin-1P were identified in the culture medium of glucose, cellobiose and cellulose grown cells. New glucose derivatives were identified in the culture fluid under all the substrate conditions. In particular, a compound identified as cellobionic acid accumulated at high levels in the medium of F. succinogenes S85 cultures. The production of cellobionic acid (and cellobionolactone also identified) was very surprising in an anaerobic bacterium. The results suggest metabolic shifts when cells were growing on solid substrate cellulose or straw compared to soluble sugars.


Asunto(s)
Celulosa/metabolismo , Medios de Cultivo/metabolismo , Disacáridos/metabolismo , Fibrobacter/metabolismo , Oligosacáridos/metabolismo , Medios de Cultivo/química , Fibrobacter/química , Triticum/química
14.
Sci Rep ; 9(1): 4383, 2019 03 13.
Artículo en Inglés | MEDLINE | ID: mdl-30867542

RESUMEN

Clouds constitute the uppermost layer of the biosphere. They host diverse communities whose functioning remains obscure, although biological activity potentially participates to atmospheric chemical and physical processes. In order to gain information on the metabolic functioning of microbial communities in clouds, we conducted coordinated metagenomics/metatranscriptomics profiling of cloud water microbial communities. Samples were collected from a high altitude atmospheric station in France and examined for biological content after untargeted amplification of nucleic acids. Living microorganisms, essentially bacteria, maintained transcriptional and translational activities and expressed many known complementary physiological responses intended to fight oxidants, osmotic variations and cold. These included activities of oxidant detoxification and regulation, synthesis of osmoprotectants/cryoprotectants, modifications of membranes, iron uptake. Consistently these energy-demanding processes were fueled by central metabolic routes involved in oxidative stress response and redox homeostasis management, such as pentose phosphate and glyoxylate pathways. Elevated binding and transmembrane ion transports demonstrated important interactions between cells and their cloud droplet chemical environments. In addition, polysaccharides, potentially beneficial for survival like exopolysaccharides, biosurfactants and adhesins, were synthesized. Our results support a biological influence on cloud physical and chemical processes, acting notably on the oxidant capacity, iron speciation and availability, amino-acids distribution and carbon and nitrogen fates.


Asunto(s)
Atmósfera/análisis , Metagenómica/métodos , Adhesinas Bacterianas/genética , Adhesinas Bacterianas/metabolismo , Carbono/metabolismo , Glioxilatos/metabolismo , Nitrógeno/metabolismo , Ácidos Nucleicos/genética , Ácidos Nucleicos/metabolismo , Oxidación-Reducción , Estrés Oxidativo/genética , Estrés Oxidativo/fisiología , Vía de Pentosa Fosfato/genética , Vía de Pentosa Fosfato/fisiología , Temperatura
16.
Sci Rep ; 9(1): 7663, 2019 05 21.
Artículo en Inglés | MEDLINE | ID: mdl-31113999

RESUMEN

A cloud water sample collected at the puy de Dôme observatory (PUY) has been incubated under dark conditions, with its endogenous microbiota at two different temperatures (5 and 15 °C), and the change in the molecular organic composition of this sample was analyzed by Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS). Microorganisms were metabolically active and strongly modified the dissolved organic matter since they were able to form and consume many compounds. Using Venn diagrams, four fractions of compounds were identified: (1) compounds consumed by microbial activity; (2) compounds not transformed during incubation; (3) compounds resulting from dark chemistry (i.e., hydrolysis and Fenton reactions) and, finally, (4) compounds resulting from microbial metabolic activity. At 15 °C, microorganisms were able to consume 58% of the compounds initially present and produce 266 new compounds. For this cloud sample, the impact of dark chemistry was negligible. Decreasing the temperature to 5 °C led to the more efficient degradation of organic compounds (1716 compounds vs. 1094 at 15 °C) but with the less important production of new ones (173). These transformations were analyzed using a division into classes based on the O/C and H/C ratios: lipid-like compounds, aliphatic/peptide-like compounds, carboxylic-rich alicyclic molecule (CRAM)-like structures, carbohydrate-like compounds, unsaturated hydrocarbons, aromatic structures and highly oxygenated compounds (HOCs). Lipid-like, aliphatic/peptide-like and CRAMs-like compounds were the most impacted since they were consumed to maintain the microbial metabolism. On the contrary, the relative percentages of CRAMs and carbohydrates increased after incubation.


Asunto(s)
Atmósfera/química , Microbiota , Microbiología del Agua , Agua/química , Carbohidratos/análisis , Carbono/análisis , Ciclo del Carbono , Hidrocarburos/análisis , Lípidos/análisis , Espectrometría de Masas , Péptidos/análisis , Espectroscopía Infrarroja por Transformada de Fourier , Temperatura
17.
Sci Rep ; 9(1): 12799, 2019 09 05.
Artículo en Inglés | MEDLINE | ID: mdl-31488860

RESUMEN

In cloud water, microorganisms are exposed to very strong stresses especially related to the presence of reactive oxygen species including H2O2 and radicals, which are the driving force of cloud chemistry. In order to understand how the bacterium Pseudomonas graminis isolated from cloud water respond to this oxidative stress, it was incubated in microcosms containing a synthetic solution of cloud water in the presence or in the absence of H2O2. P. graminis metabolome was examined by LC-MS and NMR after 50 min and after 24 hours of incubation. After 50 min, the cells were metabolizing H2O2 while this compound was still present in the medium, and it was completely biodegraded after 24 hours. Cells exposed to H2O2 had a distinct metabolome as compared to unexposed cells, revealing modulations of certain metabolic pathways in response to oxidative stress. These data indicated that the regulations observed mainly involved carbohydrate, glutathione, energy, lipid, peptides and amino-acids metabolisms. When cells had detoxified H2O2 from the medium, their metabolome was not distinguishable anymore from unexposed cells, highlighting the capacity of resilience of this bacterium. This work illustrates the interactions existing between the cloud microbial metabolome and cloud chemistry.


Asunto(s)
Microbiología del Aire , Peróxido de Hidrógeno/metabolismo , Pseudomonas/metabolismo , Adenosina Trifosfato/metabolismo , Humedad , Espectrometría de Masas , Metaboloma , Estrés Oxidativo
18.
FEBS J ; 275(13): 3503-11, 2008 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-18513327

RESUMEN

Cellulose and wheat straw degradation by Ruminococcus albus was monitored using NMR spectroscopy. In situ solid-state (13)C-cross-polarization magic angle spinning NMR was used to monitor the modification of the composition and structure of cellulose and (13)C-enriched wheat straw during the growth of the bacterium on these substrates. In cellulose, amorphous regions were not preferentially degraded relative to crystalline areas by R. albus. Cellulose and hemicelluloses were also degraded at the same rate in wheat straw. Liquid state two-dimensional NMR experiments were used to analyse in detail the sugars released in the culture medium, and the integration of NMR signals enabled their quantification at various times of culture. The results showed glucose and cellodextrin accumulation in the medium of cellulose cultures; the cellodextrins were mainly cellotriose and accumulated to up to 2 mm after 4 days. In the wheat straw cultures, xylose was the main soluble sugar detected (1.4 mm); arabinose and glucose were also found, together with some oligosaccharides liberated from hemicellulose hydrolysis, but to a much lesser extent. No cellodextrins were detected. The results indicate that this strain of R. albus is unable to use glucose, xylose and arabinose for growth, but utilizes efficiently xylooligosaccharides. R. albus 20 appears to be less efficient than Fibrobacter succinogenes S85 for the degradation of wheat straw.


Asunto(s)
Celulosa/química , Espectroscopía de Resonancia Magnética/métodos , Ruminococcus/metabolismo , Triticum/química , Arabinosa/química , Celulosa/análogos & derivados , Celulosa/metabolismo , Dextrinas/química , Fermentación , Fibrobacter/metabolismo , Glucosa/química , Concentración de Iones de Hidrógeno , Hidrólisis , Temperatura , Factores de Tiempo , Triticum/metabolismo , Xilosa/química
19.
Appl Environ Microbiol ; 74(10): 2976-84, 2008 May.
Artículo en Inglés | MEDLINE | ID: mdl-18310409

RESUMEN

The transformation of 2-aminobenzothiazole (ABT) was studied under various conditions: (i) a photodegradation process at a lambda of >300 nm in the presence of an Fe(III)-nitrilotriacetic acid complex (FeNTA), (ii) a biodegradation process using Rhodococcus rhodochrous OBT18 cells, and (iii) the combined processes (FeNTA plus Rhodococcus rhodochrous in the presence or absence of light). The transformation of ABT in the combined system, with or without light, was much more efficient (99% degradation after 25 h) than in the separated systems (37% photodegradation and 26% biodegradation after 125 h). No direct photolysis of ABT was observed. The main result seen is the strong positive impact of FeNTA on the photodegradation, as expected, and on the biotransformation efficiency of ABT, which was more surprising. This positive impact of FeNTA on the microbial metabolism was dependent on the FeNTA concentration. The use of UV high-performance liquid chromatography, liquid chromatography-electrospray ionization mass spectrometry, and in situ (1)H nuclear magnetic resonance provided evidence of the intermediary products and thus established transformation pathways of ABT in the different processes. These pathways were identical whether the degradation process was photo- or biotransformation. A new photoproduct was identified (4OH-ABT), corresponding to a hydroxylation reaction on position 4 of the aromatic ring of ABT.


Asunto(s)
Benzotiazoles/metabolismo , Compuestos Férricos/metabolismo , Ácido Nitrilotriacético/análogos & derivados , Rhodococcus/metabolismo , Biotransformación , Cromatografía Liquida , Hidroxilación , Cinética , Luz , Espectroscopía de Resonancia Magnética , Estructura Molecular , Ácido Nitrilotriacético/metabolismo , Fotólisis , Espectrometría de Masa por Ionización de Electrospray , Factores de Tiempo
20.
Appl Environ Microbiol ; 74(20): 6320-6, 2008 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-18757580

RESUMEN

Aminopolycarboxylic acids are ubiquitous in natural waters and wastewaters. They have the ability to form very stable water-soluble complexes with many metallic di- or trivalent ions. The iron complex nitrilotriacetic acid-Fe(III) (FeNTA) has been previously shown to increase drastically the rate of photo- and biodegradation of 2-aminobenzothiazole, an organic pollutant, by Rhodococcus rhodochrous. For this paper, the fate of FeNTA was investigated during these degradation processes. First, it was shown, using in situ (1)H nuclear magnetic resonance, that the complex FeNTA was biodegraded by Rhodococcus rhodochrous cells, but the ligand (NTA) alone was not. This result indicates that FeNTA was transported and biotransformed inside the cell. The same products, including iminodiacetic acid, glycine, and formate, were obtained during the photo- and biodegradation processes of FeNTA, likely because they both involve oxidoreduction mechanisms. When the results of the different experiments are compared, the soluble iron, measured by spectrophotometry, was decreasing when microbial cells were present. About 20% of the initial iron was found inside the cells. These results allowed us to propose detailed mechanistic schemes for FeNTA degradation by solar light and by R. rhodochrous.


Asunto(s)
Compuestos Férricos/metabolismo , Ácido Nitrilotriacético/análogos & derivados , Rhodococcus/metabolismo , Benzotiazoles/metabolismo , Biotransformación , Formiatos/metabolismo , Glicina/metabolismo , Iminoácidos/metabolismo , Hierro/análisis , Espectroscopía de Resonancia Magnética , Ácido Nitrilotriacético/metabolismo , Oxidación-Reducción , Rhodococcus/química
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