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1.
Biotechnol Bioeng ; 116(7): 1594-1603, 2019 07.
Artículo en Inglés | MEDLINE | ID: mdl-30883680

RESUMEN

Numerous studies on poly γ-d-glutamicacid (γ-PGA) production have investigated terrestrial renewable sources for reducing production costs, but there are no studies using waste marine resources so far. We aimed to develop a cost-effective production method of γ-d-PGA by Bacillus sp. SJ-10 using green macroalgae (Ulva sp.) as a major substrate without hydrolysis pretreatment. The SJ-10 was shown to not only cause immediate tissue degradation of the Ulva membrane but also grew well as a sole substrate. The γ-d-PGA yield was 6.29 ± 0.34 g/L under optimized conditions via the response surface method, and the produced γ-d-PGA had a thermal decomposition temperature of 310°C and molecular weight of 250-1780 kDa. The calculated cost efficiency for the final yield was 32% when compared with complex media. Therefore, the present study provided a strategy for promoting an ecofriendly and cost-effective means to produce γ-d-PGA via a marine renewable resource.


Asunto(s)
Microalgas/crecimiento & desarrollo , Ácido Poliglutámico , Ulva/crecimiento & desarrollo , Ácido Poliglutámico/biosíntesis , Ácido Poliglutámico/química , Ácido Poliglutámico/aislamiento & purificación
2.
Protein Expr Purif ; 162: 18-23, 2019 10.
Artículo en Inglés | MEDLINE | ID: mdl-31112758

RESUMEN

Bacterial ß-1,3-1,4-glucanase (BG) is an endoglucanase that hydrolyzes linear ß-glucans containing ß-1,3 and ß-1,4 linkages, such as barley ß-glucans. In this study, a BG gene was transformed into the food-grade plasmid pNZ8149 and successfully expressed in Lactococcus lactis NZ3900 using the nisin-controlled gene expression system. To facilitate extracellular secretion, the signal peptide Usp45 was added during vector construction. A histidine tag was also added for affinity purification. BG was extracellularly secreted and was also present in the cells in soluble form. N-terminal amino acid residue analysis of secreted BG revealed that the Usp45 peptide was removed. The optimum temperature and pH for both intracellular and extracellular BG were 40 °C and 6, respectively. The enzyme kinetic parameters, Vmax, Km, kcat, and kcat/Km, of extracellular BG were 1317.51 µmol min-1, 1.97 mg ml-1, 588.54 s-1, and 298.26 ml s-1∙mg-1, respectively. There was no significant difference in the enzyme kinetic parameters of intracellular and extracellular BG. The growth pattern of transformed L. lactis NZ3900 in ß-glucan-containing liquid medium confirmed ß-glucan degradation by BG. The transformed strain degraded ß-glucans, produced gluco-oligosaccharide, and produced lactic acid. The strain and expression system constructed in this study could be applied to industrial fields requiring BG produced in food-grade lactococcal secretory expression system.


Asunto(s)
Bacillus/enzimología , Proteínas Bacterianas/genética , Endo-1,3(4)-beta-Glucanasa/genética , Alimentos Fermentados/microbiología , Peces/microbiología , Expresión Génica , Lactococcus lactis/genética , Animales , Bacillus/genética , Bacillus/aislamiento & purificación , Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Clonación Molecular , Endo-1,3(4)-beta-Glucanasa/química , Endo-1,3(4)-beta-Glucanasa/metabolismo , Estabilidad de Enzimas , Cinética , Lactococcus lactis/metabolismo , beta-Glucanos/metabolismo
3.
Int Microbiol ; 22(4): 501-509, 2019 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-31098824

RESUMEN

Singleplex and duplex loop-mediated isothermal amplification (LAMP) assays were developed for detecting Vibrio anguillarum, a major bacterial pathogen of fish, and Vibrio alginolyticus, a pathogen of fish and humans, separately and simultaneously from contaminated seawater by targeting the groEL gene of V. anguillarum, which encodes a molecular chaperone protein, and the fklB gene of V. alginolyticus, which encodes a 22 kilodalton (kDa) peptidyl prolyl isomerase. The optimal reaction conditions to produce consistent results were 65 °C for 30 min, 63 °C for 30 min, and 63 °C for 40 min for the groEL (singleplex for V. anguillarum), fklB (singleplex for V. alginolyticus), and groEL + flkB (duplex) LAMP assays, respectively, analyzed via visual detection methods (use of calcein, and SYBR Green I) and agarose gel electrophoresis. The assays were found to be species-specific, as closely related Vibrio spp. were not detected. The limits of detection (LoDs) of the LAMP assays for DNA template from pure culture and artificially contaminated seawater were 10 and 14 fg (groEL assay; for V. anguillarum), 12.5 and 17 fg (fklB assay; for V. alginolyticus), and 50 and 70 fg (duplex assay) per reaction, respectively, which were much better than the LoDs of conventional polymerase chain reaction (PCR). Singleplex and duplex LAMP assays were found to be rapid, species-specific, and sensitive for the detection of V. anguillarum and V. alginolyticus and are applicable to laboratory and field diagnostics.


Asunto(s)
Proteínas Bacterianas/genética , Chaperonina 60/genética , Enfermedades de los Peces/microbiología , Técnicas de Amplificación de Ácido Nucleico/métodos , Vibriosis/microbiología , Vibriosis/veterinaria , Vibrio/aislamiento & purificación , Animales , Enfermedades de los Peces/diagnóstico , Humanos , Vibrio/genética , Vibriosis/diagnóstico , Vibrio alginolyticus/clasificación , Vibrio alginolyticus/genética
4.
Fish Shellfish Immunol ; 92: 719-727, 2019 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-31271838

RESUMEN

The aim of this study was to investigate the effects of intestinal microbial manipulation by dietary probiotic supplementation on digestive enzyme activity, immune-related gene transcription, intestinal structure alteration, and viability against pathogenic challenge in olive flounder. Similar-sized flounders (14.92 ±â€¯0.21 g) were divided into three groups and supplemented with a control (without probiotic) or 1 × 108 CFU/g diet of each of Bacillus sp. SJ-10 (ProB) and Lactobacillus plantarum (ProL) for eight weeks. At the end of the feeding trial, the estimated intestinal microbial richness (Chao1) and diversity (Shannon) demonstrated a significant (P < 0.05) abundance in the ProB group (484.80 ±â€¯88.75, 5.08 ±â€¯0.17) compared to the ProL (285.32 ±â€¯17.78, 4.54 ±â€¯0.09) and control groups (263.23 ±â€¯20.20, 4.30 ±â€¯0.20). A similar alteration phenomenon was also found at the phylum level, with a higher abundance of Proteobacteria, Actinobacteria, and Acidobacteria. Trypsin and lipase activities were elevated in both the ProB and ProL groups compared to the control, but amylase was only higher in the ProB group. The expression levels of pro-inflammatory cytokines, such as tumor necrosis factor-α, interleukin (IL)-1ß, and IL-6 were significantly higher in the ProB group than in the other two groups. There was a significant increase in transcription of IL-10 in both the ProB and ProL groups compared to the control. The length of villi and microvilli of probiotic-fed olive flounder was increased but was not significantly different from the control group. In an in vivo challenge experiment with Streptococcus iniae (1 × 108 CFU/mL), the survival rates of the ProB and ProL groups were 29.17% and 12.50%, respectively, when control mortality reached 100%. Therefore, intestinal microbiota manipulation by probiotic supplementation increased the richness of the bacterial population, digestive enzyme activity, intestinal immune gene transcription, and infectious disease protection in olive flounder.


Asunto(s)
Digestión/efectos de los fármacos , Peces Planos/fisiología , Microbioma Gastrointestinal/efectos de los fármacos , Inmunidad Innata/efectos de los fármacos , Proteínas de Vegetales Comestibles/administración & dosificación , Probióticos/metabolismo , Alimentación Animal/análisis , Fenómenos Fisiológicos Nutricionales de los Animales/efectos de los fármacos , Animales , Dieta/veterinaria , Peces Planos/anatomía & histología , Peces Planos/microbiología , Intestinos/anatomía & histología , Intestinos/efectos de los fármacos , Intestinos/enzimología , Intestinos/microbiología , Probióticos/administración & dosificación
5.
Fish Shellfish Immunol ; 88: 424-431, 2019 May.
Artículo en Inglés | MEDLINE | ID: mdl-30872030

RESUMEN

Investigations were carried out to evaluate and quantify the effects of dietary supplementation with heat-killed (HK) Bacillus sp. SJ-10 (BSJ-10) probiotic (1 × 108 CFU g-1) on the growth and immunity of olive flounder (Paralichthys olivaceus). Flounder (averagely 9.64 g) were divided into two groups, and fed control and HK BSJ-10 (HKBSJ-10)-inoculated diets for 8 weeks. Investigations were carried out on growth and feed utilizations, innate immunity, serum biochemical parameters, microvilli length, and pro- and anti-inflammatory cytokine gene (tumor necrosis factor [TNF]-α, interleukin [IL]-1ß, IL-6, and IL-10) transcriptions. Compared to control, HKBSJ-10 diet significantly (P < 0.05) enhanced weight gain and protein efficiency ratio, 1.17 and 1.11 folds respectively. Humoral innate immune parameters, lysozyme and superoxide dismutase in treatment group were also elevated by 1.34 and 1.16 folds. Similarly, an increased (P < 0.05) relative expressions of TNF-α, IL-1ß, IL-6 were recorded in liver (2.71, 3.38, and 4.12 folds respectively), and gill (2.08, 1.98, and 1.81 folds respectively) than that of controls. Moreover, after challenge with Streptococcus iniae (1 × 108 CFU mL-1), the HKBSJ-10-fed group exhibited significantly higher protection (P < 0.05) against streptococcosis compared to controls, validating the observed changes in immune parameters and induction on the cytokine-encoding genes. Therefore, HKBSJ-10 increases growth, modulates innate immune parameters, and protects olive flounders against streptococcosis.


Asunto(s)
Bacillus , Enfermedades de los Peces/prevención & control , Lenguado/crecimiento & desarrollo , Lenguado/inmunología , Inmunidad Innata , Probióticos/administración & dosificación , Infecciones Estreptocócicas/veterinaria , Alimentación Animal/microbiología , Animales , Citocinas/inmunología , Suplementos Dietéticos/microbiología , Resistencia a la Enfermedad , Calor , Infecciones Estreptocócicas/prevención & control , Streptococcus iniae , Aumento de Peso
6.
Appl Microbiol Biotechnol ; 103(3): 1429-1439, 2019 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-30402772

RESUMEN

The purpose of this study was to evaluate Bacillus sp. SJ-10, isolated from traditional Korean seafood, as a probiotic. Strain SJ-10 was demonstrated to be safe, on the basis of in vitro tests confirming the absence of cytotoxicity, hemolysis, and genes with toxigenic potential, and was susceptible to antibiotics. It met the probiotic prerequisites of a spore count that remained almost constant, acid and bile tolerance under simulated gastrointestinal conditions, and significant adhesion to Caco-2 cells. Moreover, SJ-10 demonstrated beneficial properties as a probiotic: broad-spectrum antimicrobial activity, hydroxyl radical, antioxidant activity, production of functional enzymes such as ß-galactosidase and phytase, and selective growth via ß-glucan fermentation. The fish-feeding trial demonstrated that olive flounder fed diets containing SJ-10 alone or in combination with ß-glucan exhibited significantly higher growth performance and pathogenic disease resistance compared with those fed diets containing ß-glucan alone, indicating that SJ-10 diets exerted a beneficial effect as an antibiotic replacer in terms of growth performance and disease resistance in olive flounder.


Asunto(s)
Bacillus/aislamiento & purificación , Agentes de Control Biológico/farmacología , Resistencia a la Enfermedad/efectos de los fármacos , Alimentos Fermentados/microbiología , Enfermedades de los Peces/prevención & control , Lenguado/crecimiento & desarrollo , Simbióticos , beta-Glucanos/farmacología , 6-Fitasa/metabolismo , Animales , Antioxidantes/farmacología , Acuicultura/métodos , Bacillus/clasificación , Células CACO-2 , Línea Celular Tumoral , Hordeum/metabolismo , Humanos , Probióticos/farmacología , Alimentos Marinos/microbiología , beta-Galactosidasa/metabolismo
7.
Fish Shellfish Immunol ; 82: 544-553, 2018 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-30194054

RESUMEN

Bacillus sp. SJ-10 (BSJ-10) was identified from traditional Korean fermented fish, the previously recognized prebiotic ß-glucooligosaccharides (BGO), and their combination as a synbiotic were prepared to evaluate their individual and synergistic effects in olive flounder (Paralichthys olivaceus). Four diets (one control and three treatments) were formulated containing neither BSJ-10 nor BGO (control), 1 × 108 CFU g -1 BSJ-10 (BSJ-10), 0.1% BGO (BGO), and 1 × 108 CFU g-1 BSJ-10 + 0.1% BGO (BSJ-10 + BGO). Triplicates of 15 fish (weight 10 ± 0.25 g) were randomly allocated to the four diet groups and fed one of the diets for 8 weeks. At the end of the experiment, fish weight gain (WG), specific growth rate (SGR), feed conversion ratio, and protein efficiency ratio in BSJ-10, BGO and BSJ-10 + BGO diets were positively modulated (P < 0.05) compared with control. Specially, WG and SGR were significantly (P < 0.05) higher in BSJ-10 + BGO than that of BSJ-10 and BGO (individual component). The innate immune parameters such as respiratory burst, superoxide dismutase, and lysozyme activity (LSZ) of fish fed BSJ-10 and BSJ-10 + BGO (both groups) were significantly (P < 0.05) higher than the control. Moreover, myeloperoxidase activity (MPO) and LSZ of fish fed BSJ-10 + BGO were significantly higher compared with individual component. Compared with control, intestinal BSJ-10 content, expression of interleukin (IL)-1ß in liver and kidney, and tumor necrosis factor (TNF)-α in liver were higher in both groups, but microvillus length was increased (P < 0.05) only in BSJ-10 + BGO. During in vivo challenge experiment with Streptococcus iniae (1 × 108 CFU ml-1), survival rate of fish was significantly higher in all treatment groups versus control. Moreover, in BSJ-10 + BGO, protection against S. iniae infection and transcription of TNF-α and IL-6 in gill were significantly (P < 0.05) higher than the individual component. Collectively, an improved WG, SGR, MPO, LSZ, transcription of IL-6 and TNF-α, and cumulative survival rate against streptococcosis clearly demonstrates a synergistic outcome of diet BSJ-10 + BGO as synbiotic in olive flounder.


Asunto(s)
Bacillus/química , Resistencia a la Enfermedad/efectos de los fármacos , Enfermedades de los Peces/inmunología , Peces Planos/inmunología , Inmunidad Innata/efectos de los fármacos , Oligosacáridos/administración & dosificación , Simbióticos/administración & dosificación , Alimentación Animal/análisis , Animales , Dieta/veterinaria , Peces Planos/crecimiento & desarrollo , Peces Planos/metabolismo , Infecciones Estreptocócicas/inmunología , Streptococcus iniae/fisiología
8.
Curr Microbiol ; 75(10): 1378-1383, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-29931384

RESUMEN

Bacillus sp. SJ-10 (KCCM 90078, JCM 15709) is a halotolerant bacterium isolated from a traditional Korean food, i.e., salt-fermented fish (jeotgal). The bacterium can survive and engage in metabolism at high salt concentrations. Here, we reported complete genome sequence of Bacillus sp. SJ-10, which has a single circular chromosome of 4,041,649 base pairs with a guanine-cytosine content of 46.39%. Bacillus sp. SJ-10 encodes a subunit of poly-γ-glutamic acid (γ-PGA) with a molecular weight of approximately 400 kDa, which contains four γ-PGA synthases (pgsB, pgsC, pgsAA and pgsE) and one γ-PGA-releasing gene (pgsS). This bacterium also able to produce salt-stable enzymes such as protease, ß-glucosidase, and ß-1,3-1,4-glucanase. This affords significant insights into strategies employed by halotolerant bacteria to survive at high salt concentrations. The sequence contains information on secondary metabolites biosynthetic gene cluster, and most importantly enzymes produced by the bacterium may be valuable with respect to food, beverage, detergent, animal feed, and certain commercial contexts.


Asunto(s)
Bacillus/genética , Bacillus/metabolismo , Genoma Bacteriano , Ácido Poliglutámico/análogos & derivados , Secuenciación Completa del Genoma , Bacillus/aislamiento & purificación , Bacillus/ultraestructura , Biología Computacional/métodos , Anotación de Secuencia Molecular , Filogenia , Ácido Poliglutámico/biosíntesis , ARN Ribosómico 16S/genética
9.
Protein Expr Purif ; 110: 130-7, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-25747528

RESUMEN

Peptidyl-prolyl cis/trans isomerase (PPIase) catalyzes the isomerization of peptide bonds to achieve conformational changes in native folded proteins. An FKBP-type PPIase with an approximate molecular weight of 17kDa was isolated from Vibrio anguillarum O1 and named VaFKBP17. To investigate its biochemical properties, the ppi gene from V. anguillarum O1 was isolated and overexpressed in Escherichia coli. A protease-coupled assay for isomerization activity, using Succinyl-Ala-Phe-Pro-Phe-p nitroanilide as substrate, indicated that the activity of VaFKBP17 was highest at low temperature (5°C) and alkaline conditions (pH 10). The immunosuppressant FK506 inhibited the isomerization activity of VaFKBP17. The chaperone activity of VaFKBP17 was assessed using a citrate synthase thermal aggregation activity assay. To evaluate its ability to catalyze protein refolding, the effect of VaFKBP17 on inclusion bodies was investigated during a dilution process. In this assay, VaFKBP17 was able to assist protein refolding. These results provide evidence that VaFKBP17 possesses chaperone-like activity. The structural homology of VaFKBP17 relative to other known bacterial FKBPs was also examined.


Asunto(s)
Proteínas Bacterianas/aislamiento & purificación , Isomerasa de Peptidilprolil/aislamiento & purificación , Plásmidos/metabolismo , Proteínas Recombinantes de Fusión/aislamiento & purificación , Vibrio/química , Secuencia de Aminoácidos , Proteínas Bacterianas/antagonistas & inhibidores , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Clonación Molecular , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Histidina/química , Histidina/genética , Concentración de Iones de Hidrógeno , Cuerpos de Inclusión/química , Cuerpos de Inclusión/enzimología , Modelos Moleculares , Datos de Secuencia Molecular , Peso Molecular , Oligopéptidos/química , Oligopéptidos/genética , Isomerasa de Peptidilprolil/antagonistas & inhibidores , Isomerasa de Peptidilprolil/química , Isomerasa de Peptidilprolil/genética , Plásmidos/química , Pliegue de Proteína , Estructura Terciaria de Proteína , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/genética , Alineación de Secuencia , Homología Estructural de Proteína , Especificidad por Sustrato , Tacrolimus/química , Temperatura , Vibrio/enzimología
10.
Bioprocess Biosyst Eng ; 38(7): 1335-46, 2015 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-25682105

RESUMEN

The ß-glucosidase gene, bglC, was cloned from Bacillus sp. SJ-10 isolated from the squid jeotgal. Recombinant BglC protein overexpression was induced in Escherichia coli. The optimal pH and temperature of the enzyme, using p-nitrophenyl-ß-D-glucopyranoside (pNPßGlc) as a substrate, were pH 6 and 40 °C, respectively. Enzymatic activity increased by 3.3- and 3.5-fold in the presence of 15% NaCl and KCl, respectively. Furthermore, enzyme thermostability improved in the presence of NaCl or KCl. At 45 °C in the presence of salts, the enzyme was stable for 2 h and maintained 80% activity. In the absence of salts, BglC completely lost activity after 110 min at 45 °C. Comparison of the kinetic parameters at various salt concentrations revealed that BglC had approximately 1.5- and 1.2-fold higher affinity and hydrolyzed pNPßGlc 1.9- and 2.1-fold faster in the presence of 15% NaCl and KCl, respectively. Additionally, the Gibb's free energy for denaturation was higher in the presence of 15% salt than in the absence of salt at 45 and 50 °C. Since enzymatic activity and thermostability were enhanced under high salinity conditions, BglC is an ideal salt-tolerant enzyme for further research and industrial applications.


Asunto(s)
Bacillus/metabolismo , Fermentación , Salinidad , Alimentos Marinos , beta-Glucosidasa/metabolismo , Clonación Molecular , Estabilidad de Enzimas , Calor , Cinética , República de Corea , Especificidad por Sustrato , beta-Glucosidasa/genética
11.
Bioprocess Biosyst Eng ; 38(2): 207-17, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25042893

RESUMEN

This study employed a statistical methodology to investigate the optimization of conversion conditions and evaluate the reciprocal interaction of reaction factors related to the process of red-algae Gracilaria verrucosa conversion to sugars (glucose, galactose), levulinic acid and 5-hydroxymethylfurfural (5-HMF) by acidic hydrolysis. Overall, the conditions optimized for glucose formation included a higher catalyst concentration than did those for galactose, and these conditions for galactose were similar to those for 5-HMF. Levulinic acid production, meanwhile, was optimized at a higher reaction temperature, a higher catalyst concentration, and a longer reaction time than was glucose, galactose or 5-HMF production. By this approach, the optimal yields (and reaction conditions) for glucose, galactose, levulinic acid, and 5-HMF were as follows: glucose 5.29 g/L (8.46 wt%) (reaction temperature 160 °C, catalyst concentration 1.92%, reaction time 20 min), galactose 18.38 g/L (29.4 wt%) (160 °C, 1.03%, 20 min), levulinic acid 14.65 g/L (18.64 wt%) (180.9 °C, 2.85%, 50 min), and 5-HMF 3.74 g/L (5.98 wt%) (160.5 °C, 1%, 20 min).


Asunto(s)
Reactores Biológicos/microbiología , Furaldehído/análogos & derivados , Galactosa/biosíntesis , Glucosa/biosíntesis , Ácidos Levulínicos/metabolismo , Rhodophyta/metabolismo , Técnicas de Cultivo de Célula/métodos , Simulación por Computador , Furaldehído/metabolismo , Hidrólisis , Modelos Biológicos , Modelos Estadísticos , Rhodophyta/clasificación , Especificidad de la Especie , Temperatura
12.
Protein Expr Purif ; 101: 54-60, 2014 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-24931498

RESUMEN

Vibrio anguillarum, a causative agent of vibriosis in finfish, crustaceans, and bivalves, is a Gram-negative, motile marine bacterium. Most bacteria have developed survival strategies in various environments. The aim of this study was to investigate the changes in protein expression of V. anguillarum O1 incubated under different conditions using two dimensional electrophoresis and MALDI-TOF MS/MS analysis. Result indicated that peptidyl-prolyl cis/trans isomerase (PPIase) expression was increasingly appeared when incubated at low temperature (15°C) and alkaline conditions (pH 10). Subsequently, the ppi gene from V. anguillarum O1 was isolated and overexpressed in Escherichia coli to characterize the biochemical properties. The cloned ppi gene encoded 206 amino acids containing the conserved regions identified in FK506 binding pocket. To determine the optimal conditions of the purified recombinant PPIase protein (VaFKBP22), we used Succinyl-Ala-Phe-Pro-Phe-p nitroanilide as substrate and the highest enzymatic activity was found at 5°C and pH 6. VaFKBP22 was detected in the cytoplasm and periplasm of V. anguillarum O1. In addition, VaFKBP22 also showed chaperone activity and did not show cytotoxic activity.


Asunto(s)
Isomerasa de Peptidilprolil/biosíntesis , Isomerasa de Peptidilprolil/genética , Proteínas Recombinantes/genética , Vibrio/enzimología , Secuencia de Aminoácidos , Secuencia de Bases , Línea Celular , Clonación Molecular , Frío , Electroforesis en Gel Bidimensional , Inhibidores Enzimáticos/farmacología , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Regulación Bacteriana de la Expresión Génica , Datos de Secuencia Molecular , Isomerasa de Peptidilprolil/antagonistas & inhibidores , Pliegue de Proteína , Proteínas Recombinantes/análisis , Proteínas Recombinantes/biosíntesis , Alineación de Secuencia , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Tacrolimus/farmacología , Espectrometría de Masas en Tándem , Vibrio/metabolismo
13.
Mol Cell Probes ; 27(5-6): 171-5, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-23660458

RESUMEN

Vibrio parahaemolyticus is a significant cause of human gastrointestinal disorders worldwide, transmitted primarily by ingestion of raw or undercooked contaminated seafood. In this study, a multiplex PCR assay for the detection and differentiation of V. parahaemolyticus strains was developed using primer sets for a species-specific marker, groEL, and two virulence markers, tdh and trh. Multiplex PCR conditions were standardised, and extracted genomic DNA of 70 V. parahaemolyticus strains was used for identification. The sensitivity and efficacy of this method were validated using artificially inoculated shellfish and seawater. The expected sizes of amplicons were 510 bp, 382 bp, and 171 bp for groEL, tdh and trh, respectively. PCR products were sufficiently different in size, and the detection limits of the multiplex PCR for groEL, tdh and trh were each 200 pg DNA. Specific detection and differentiation of virulent from non-virulent strains in shellfish homogenates and seawater was also possible after artificial inoculation with various V. parahaemolyticus strains. This newly developed multiplex PCR is a rapid assay for detection and differentiation of pathogenic V. parahaemolyticus strains, and could be used to prevent disease outbreaks and protect public health by helping the seafood industry maintain a safe shellfish supply.


Asunto(s)
Proteínas Bacterianas/genética , Chaperonina 60/genética , Proteínas Hemolisinas/genética , Reacción en Cadena de la Polimerasa Multiplex/métodos , Vibrio parahaemolyticus/clasificación , Vibrio parahaemolyticus/genética , Animales , Proteínas Bacterianas/metabolismo , Toxinas Bacterianas/genética , Chaperonina 60/metabolismo , Cartilla de ADN , Brotes de Enfermedades , Industria de Alimentos , Humanos , Salud Pública , Agua de Mar/microbiología , Mariscos/microbiología , Vibriosis/microbiología , Vibrio parahaemolyticus/aislamiento & purificación
14.
Bioprocess Biosyst Eng ; 36(6): 721-7, 2013 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-23355080

RESUMEN

A novel ß-1,3-1,4-glucanase gene was identified in Bacillus sp. SJ-10 (KCCM 90078) isolated from jeotgal, a traditional Korean fermented fish. We analysed the ß-1,3-1,4-glucanase gene sequence and examined the recombinant enzyme. The open reading frame of the gene encoded 244 amino acids. The sequence was not identical to any ß-glucanases deposited in GenBank. The gene was cloned into pET22b(+) and expressed in Escherichia coli BL21. Purification of recombinant ß-1,3-1,4-glucanase was conducted by affinity chromatography using a Ni-NTA column. Enzyme specificity of ß-1,3-1,4-glucanase was confirmed based on substrate specificity. The optimal temperature and pH of the purified enzyme towards barley ß-glucan were 50 °C and pH 6, respectively. More than 80 % of activity was retained at temperatures of 30-70 °C and pH values of 4-9, which differed from all other bacterial ß-1,3-1,4-glucanases. The degradation products of barley ß-glucan by ß-1,3-1,4-glucanase were analysed using thin-layer chromatography, and ultimately glucose was produced by treatment with cellobiase.


Asunto(s)
Bacillus/genética , Proteínas Bacterianas , Peces , beta-Glucosidasa , Animales , Bacillus/enzimología , Bacillus/aislamiento & purificación , Proteínas Bacterianas/biosíntesis , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Secuencia de Bases , Clonación Molecular , Escherichia coli/genética , Corea (Geográfico) , Datos de Secuencia Molecular , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , beta-Glucosidasa/biosíntesis , beta-Glucosidasa/química , beta-Glucosidasa/genética
15.
J Environ Manage ; 130: 153-9, 2013 Nov 30.
Artículo en Inglés | MEDLINE | ID: mdl-24076515

RESUMEN

There is a growing demand for the efficient treatment of seaweed waste. We identified six bacterial strains from the marine environment for the reutilization of brown-seaweed waste, and the most potentially useful strain, Microbacterium oxydans, was chosen and further investigated. Plate assays indicated that this bacterial isolate possessed both alginate lyase and laminarinase activities. The optimal inoculum size, pH, temperature and substrate concentration for the degradation of brown-seaweed polysaccharides by the isolate were as follows: 20% (v v(-1)), pH 6.0, 37 °C, and 5 g L(-1) for alginate and 20% (v v(-1)), pH 6.0, 30 °C, and 10 g L(-1) for laminarin, respectively. During 6 d in culture under the optimal conditions, the isolate produced 0.17 g L(-1) of reducing sugars from alginate with 11.0 U mL(-1) of maximal alginate lyase activity, and 5.11 and 2.88 g L(-1) of reducing sugars and glucose from laminarin, respectively. In particular, a fair amount of laminarin was degraded to glucose (28.8%) due to the isolate's exolytic laminarinase activity. As a result, the reutilization of brown-seaweed waste by this isolate appears to be possible for the production of reducing sugars as a valuable resource. This is the first study to directly demonstrate the ability of M. oxydans to degrade both alginate and laminarin.


Asunto(s)
Actinomycetales/metabolismo , Alginatos/metabolismo , Conservación de los Recursos Naturales , Polisacáridos/metabolismo , Algas Marinas/metabolismo , Administración de Residuos/métodos , Actinomycetales/enzimología , Biodegradación Ambiental , Celulasas/metabolismo , Glucanos , Ácido Glucurónico/metabolismo , Ácidos Hexurónicos/metabolismo , Concentración de Iones de Hidrógeno , Polisacárido Liasas/metabolismo , Temperatura
16.
Anal Biochem ; 424(1): 32-4, 2012 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-22342881

RESUMEN

The untranscribed DNA sequences of the intergenic spacer regions (ISRs) in the groESL gene of 23 Vibrio species were determined and compared. ISR sequence length (41-85 bp) was variable. Vibrio species could be divided into three groups according to the length and homology of their ISR sequences. DNA array hybridization using ISR-specific probes accurately distinguished Vibrio parahaemolyticus and Vibrio vulnificus from other species.


Asunto(s)
Proteínas Bacterianas/genética , Chaperoninas/genética , ADN Intergénico/genética , Análisis de Secuencia por Matrices de Oligonucleótidos/métodos , Vibrio parahaemolyticus/genética , Vibrio parahaemolyticus/aislamiento & purificación , Vibrio vulnificus/genética , Vibrio vulnificus/aislamiento & purificación , Secuencia de Bases , Datos de Secuencia Molecular , Familia de Multigenes/genética , Alineación de Secuencia , Moldes Genéticos
17.
Biotechnol Lett ; 34(2): 315-20, 2012 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-22042302

RESUMEN

A bacteriocin-producing Lactococcus lactis subsp. lactis was isolated from the intestine of olive flounder. The bacteriocin was identified as nisin Z. It was active against Gram-positive bacteria. Nisin Z at 3,200 arbitrary units (AU) was more effective in seawater than in PBS; growth of Streptococcus iniae was completely inhibited within 3 h. Nisin Z preparations with 3.5% (w/v) NaCl was the most effective against S. iniae being similar to nisin Z in seawater. Nisin Z is thus a good alternative to antibiotics to prevent streptococcosis caused by S. iniae aquaculture systems.


Asunto(s)
Lactococcus lactis/metabolismo , Nisina/análogos & derivados , Sales (Química)/farmacología , Streptococcus/efectos de los fármacos , Streptococcus/crecimiento & desarrollo , Animales , Antibacterianos/aislamiento & purificación , Antibacterianos/farmacología , Recuento de Colonia Microbiana , Medios de Cultivo/química , Sinergismo Farmacológico , Peces/microbiología , Tracto Gastrointestinal/microbiología , Lactococcus lactis/aislamiento & purificación , Viabilidad Microbiana/efectos de los fármacos , Nisina/aislamiento & purificación , Nisina/farmacología , Agua de Mar/microbiología
18.
Bioprocess Biosyst Eng ; 35(1-2): 273-82, 2012 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-21979859

RESUMEN

Vibrio anguillarum is a halophilic Gram-negative bacterium causing vibriosis in marine fish and other aquatic animals. Most bacteria have developed strategies to survive in harsh environments, and V. anguillarum also encounters various stresses in seawater and hosts. In this study, we investigated changes in protein expression of V. anguillarum in response to diverse stress conditions of temperature, pH, and NaCl. Proteins were separated by 2D-PAGE, differences in expression patterns under each of the above conditions were observed, and proteins were identified using MALDI-TOF MS/MS. We found an oxidoreductase short-chain dehydrogenase/reductase family protein (OSDR), commonly down-regulated under all applied stresses (temperature 15 °C, pH 5 or 10, and NaCl 2 M). Analysis at transcriptional level using RT-PCR showed that osdr gene expression was reduced over time under these stress conditions. Among the various stresses, pH 10 was the most effective for reduction of osdr mRNA transcription. Our findings provide a useful candidate protein for detection of environmental change using V. anguillarum.


Asunto(s)
Proteínas Bacterianas/metabolismo , Ecosistema , Regulación Bacteriana de la Expresión Génica/fisiología , Proteoma/metabolismo , Vibrio/fisiología , Adaptación Fisiológica/fisiología , Perfilación de la Expresión Génica , Especificidad de la Especie , Temperatura , Vibrio/clasificación
19.
Appl Microbiol Biotechnol ; 92(5): 939-49, 2011 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-21681403

RESUMEN

Bifidobacterium longum grew at 65 L pilot scale of the membrane bioreactor (MBR), externally fitted with ceramic membrane (0.7 m2). Cell mass at the MBR reached 22.18 g L(-1) as dry cell weight in 12 h, which is 8.44 times higher than cell mass attained at the vial culture. The growth rate in the vial culture was µ = 0.385 h- and at the batch culture was µ = 1.13 h- in the exponential period and µ = 0.31 h(-1) in the stationary period. In the fed-batch mode was µ = 1.102 h(-1) for 6 h with inoculation and declined to µ = 0.456 h(-1) with feeding of feed medium. The growth rate at the MBR was µ = 0.134 h(-1). The number of viable cells was 6.01 × 10(12) cfu L(-1) at the batch culture, but increased to 1.15 × 10(14) cfu L(-1) at the MBR culture. The specific growth rate of viable cell number (colony-forming units per liter, per hour) improved by 6.01 times from the batch to the MBR culture. The wall shear stress mainly generated by the pump, and the membrane incorporated into the MBR was controlled during the cultivation at the MBR. The viability of B. longum declined to under 10% in the first 2 weeks of the 4-week stability test (40° C) as B. longum was exposed to over wall shear stress 713 Pa, but the viability improved to 30-40% in wall shear stress of 260 Pa or STR culture. The loss in the cell viability can be saved by managing with wall shear stress during the cultivation at the MBR.


Asunto(s)
Técnicas de Cultivo Celular por Lotes/métodos , Bifidobacterium/crecimiento & desarrollo , Reactores Biológicos/microbiología , Viabilidad Microbiana , Técnicas de Cultivo Celular por Lotes/instrumentación , Bifidobacterium/química , Biomasa , Fermentación , Cinética , Membranas Artificiales , Estrés Mecánico
20.
Probiotics Antimicrob Proteins ; 13(5): 1277-1291, 2021 10.
Artículo en Inglés | MEDLINE | ID: mdl-33713023

RESUMEN

Experiments were conducted to identify different ratios of Bacillus sp. SJ-10 and Lactobacillus plantarum KCCM 11322 mixtures at a concentration of 1 × 108 CFU/g diet; the effects on growth and cellular and humoral immune responses and the characteristics of disease protection in olive flounder (Paralichthys olivaceus). Flounder were divided into six groups and fed control diet D-1 (without Bacillus sp. SJ-10 and L. plantarum KCCM 11322), positive control diets D-2 (Bacillus sp. SJ-10 at 1 × 108 CFU/g feed) and D-3 (L. plantarum KCCM 11322 at 1 × 108 CFU/g feed); or treatment diets D-4 (3:1 Bacillus sp. SJ-10 and L. plantarum KCCM 11322 at 0.75 + 0.25 × 108 CFU/g feed), D-5 (1:1 Bacillus sp. SJ-10 and L. plantarum KCCM 11322 at 0.50 + 0.50 × 108 CFU/g feed), or D-6 (1:3 Bacillus sp. SJ-10 and L. plantarum KCCM 11322 at 0.25 + 0.75 × 108 CFU/g feed) for 8 weeks. Group D-4 demonstrated better growth and feed utilization (P < 0.05) compared with the controls and positive controls. Similar modulation was also observed in respiratory burst for all treatments and in the expression levels of TNF-α, IL-1ß, IL-6, and IL-10 in different organs in D-4. D-4 and D-5 increased respiratory burst, superoxide dismutase, lysozyme, and myeloperoxidase activities compared with the controls, and only D-4 increased microvilli length. When challenged with 1 × 108 CFU/mL Streptococcus iniae, the fish in the D-4 and D-5 groups survived up to 14 days, whereas the fish in the other groups reached 100% mortality at 11.50 days. Collectively, a ratio-specific Bacillus sp. SJ-10 and L. plantarum KCCM 11322 mixture (3:1) was associated with elevated growth, innate immunity, and streptococcosis resistance (3:1 and 1:1) compared with the control and single probiotic diets.


Asunto(s)
Bacillus , Suplementos Dietéticos , Lenguado , Inmunidad Humoral , Lactobacillus plantarum , Alimentación Animal , Fenómenos Fisiológicos Nutricionales de los Animales , Animales , Lenguado/crecimiento & desarrollo , Lenguado/inmunología
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