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1.
Biochemistry ; 52(52): 9510-8, 2013 Dec 31.
Artículo en Inglés | MEDLINE | ID: mdl-24319994

RESUMEN

Scanning of the mRNA transcript by the preinitiation complex (PIC) requires a panel of eukaryotic initiation factors, which includes eIF1 and eIF1A, the main transducers of stringent AUG selection. eIF1A plays an important role in start codon recognition; however, its molecular contacts with eIF5 are unknown. Using nuclear magnetic resonance, we unveil eIF1A's binding surface on the carboxyl-terminal domain of eIF5 (eIF5-CTD). We validated this interaction by observing that eIF1A does not bind to an eIF5-CTD mutant, altering the revealed eIF1A interaction site. We also found that the interaction between eIF1A and eIF5-CTD is conserved between humans and yeast. Using glutathione S-transferase pull-down assays of purified proteins, we showed that the N-terminal tail (NTT) of eIF1A mediates the interaction with eIF5-CTD and eIF1. Genetic evidence indicates that overexpressing eIF1 or eIF5 suppresses the slow growth phenotype of eIF1A-NTT mutants. These results suggest that the eIF1A-eIF5-CTD interaction during scanning PICs contributes to the maintenance of eIF1 within the open PIC.


Asunto(s)
Factor 1 Eucariótico de Iniciación/metabolismo , Factores de Iniciación de Péptidos/metabolismo , Proteínas de Unión al ARN/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/metabolismo , Secuencia de Aminoácidos , Factor 1 Eucariótico de Iniciación/química , Factor 1 Eucariótico de Iniciación/genética , Humanos , Modelos Moleculares , Datos de Secuencia Molecular , Factores de Iniciación de Péptidos/química , Factores de Iniciación de Péptidos/genética , Unión Proteica , Biosíntesis de Proteínas , Multimerización de Proteína , Estructura Terciaria de Proteína , Proteínas de Unión al ARN/química , Proteínas de Unión al ARN/genética , Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/química , Proteínas de Saccharomyces cerevisiae/genética , Alineación de Secuencia , Factor 5A Eucariótico de Iniciación de Traducción
2.
Langmuir ; 28(37): 13496-502, 2012 Sep 18.
Artículo en Inglés | MEDLINE | ID: mdl-22928489

RESUMEN

A novel "sink and etch" technique is used to generate stable surface nanoporosity in poly(methyl methacrylate). Layer-by-layer assembly is first used to conformally coat PMMA substrates with a uniform layer of silica nanoparticles. Thermal annealing is then applied to cause sinking and engulfment of the silica nanoparticles into the thermoplastic PMMA surface. By selectively etching away the layer of embedded silica nanoparticles, a conformal porous layer of inversely templated structure can be obtained in the PMMA surface. Characterization with atomic force microscopy shows that a variety of nanoporous surface morphologies can be achieved simply by controlling the duration and temperature of thermal annealing. The nanoporous surfaces consisting of either as assembled silica nanoparticles or templated inverse porosity in PMMA were compared in terms of their antireflective (AR) properties. Measuring AR properties provided a quantitative means to compare the stability of these porous AR surfaces before and after several cleaning cycles. Our results show that while both types of surface porosity can provide excellent AR properties (optimized for 300-400 nm), the porous layer generated by the "sink and etch" technique showed superior mechanical stability.


Asunto(s)
Nanoporos , Polimetil Metacrilato/química , Tamaño de la Partícula , Porosidad , Propiedades de Superficie , Temperatura
3.
ACS Appl Mater Interfaces ; 7(48): 26658-65, 2015 Dec 09.
Artículo en Inglés | MEDLINE | ID: mdl-26569457

RESUMEN

We demonstrate a symmetric supercapacitor by using yttria-stabilized zirconia (YSZ) as the electrolyte and silicon carbide nanowires (SiC NWs) as the electrode. The stacked symmetric SiC NWs/YSZ/SiC NWs supercapacitors exhibit excellent thermal stability and high areal capacitance at temperatures above 300 °C. The supercapacitor functions well at a record high temperature of 450 °C, yielding an areal capacitance of 92 µF cm(-2) at a voltage scan rate of 100 mV s(-1). At this temperature, it is also capable of withstanding current densities up to 50 µA cm(-2), yielding a maximum areal power density of 100 µW cm(-2). Good cycling stability is demonstrated with a capacitance retention of over 60% after 10,000 cycles at the operation temperature of 450 °C and a scan rate of 200 mV s(-1).

4.
ACS Appl Mater Interfaces ; 6(21): 18413-7, 2014 Nov 12.
Artículo en Inglés | MEDLINE | ID: mdl-25318008

RESUMEN

Three-dimensional ultrathin graphitic foams are grown via chemical vapor deposition on templated Ni scaffolds, which are electrodeposited on a close-packed array of polystyrene microspheres. After removal of the Ni, free-standing foams composed of conjoined hollow ultrathin graphite spheres are obtained. Control over the pore size and foam thickness is demonstrated. The graphitic foam is tested as a supercapacitor electrode, exhibiting electrochemical double-layer capacitance values that compare well to those obtained with the state-of-the-art 3D graphene materials.

5.
Cell Rep ; 1(6): 689-702, 2012 Jun 28.
Artículo en Inglés | MEDLINE | ID: mdl-22813744

RESUMEN

Recognition of the proper start codon on mRNAs is essential for protein synthesis, which requires scanning and involves eukaryotic initiation factors (eIFs) eIF1, eIF1A, eIF2, and eIF5. The carboxyl terminal domain (CTD) of eIF5 stimulates 43S preinitiation complex (PIC) assembly; however, its precise role in scanning and start codon selection has remained unknown. Using nuclear magnetic resonance (NMR) spectroscopy, we identified the binding sites of eIF1 and eIF2ß on eIF5-CTD and found that they partially overlapped. Mutating select eIF5 residues in the common interface specifically disrupts interaction with both factors. Genetic and biochemical evidence indicates that these eIF5-CTD mutations impair start codon recognition and impede eIF1 release from the PIC by abrogating eIF5-CTD binding to eIF2ß. This study provides mechanistic insight into the role of eIF5-CTD's dynamic interplay with eIF1 and eIF2ß in switching PICs from an open to a closed state at start codons.


Asunto(s)
Codón Iniciador/metabolismo , Factor 1 Eucariótico de Iniciación/metabolismo , Factor 2 Eucariótico de Iniciación/metabolismo , Factor 5 Eucariótico de Iniciación/química , Factor 5 Eucariótico de Iniciación/metabolismo , Secuencia de Aminoácidos , Sustitución de Aminoácidos/genética , Sitios de Unión , Secuencia Conservada , Epítopos/metabolismo , Factor 1 Eucariótico de Iniciación/química , Factor 2 Eucariótico de Iniciación/química , Evolución Molecular , Eliminación de Gen , Prueba de Complementación Genética , Humanos , Cinética , Lisina/metabolismo , Espectroscopía de Resonancia Magnética , Modelos Moleculares , Datos de Secuencia Molecular , Proteínas Mutantes/química , Proteínas Mutantes/metabolismo , Fenotipo , Unión Proteica , Estructura Terciaria de Proteína , Saccharomyces cerevisiae/citología , Saccharomyces cerevisiae/metabolismo , Dispersión del Ángulo Pequeño , Relación Estructura-Actividad , Difracción de Rayos X
6.
ACS Nano ; 4(7): 4308-16, 2010 Jul 27.
Artículo en Inglés | MEDLINE | ID: mdl-20536211

RESUMEN

We have demonstrated the utility of hollow silica nanoparticles in fabricating conformal thin film nanoporous antireflection (AR) coatings on both poly(methyl methacrylate) (PMMA) and glass substrates. Layer-by-layer (LbL) assembly was successfully used to produce ultrathin AR coatings on planar and textured surfaces. Hollow silica nanoparticles were synthesized to extend the range of apparent refractive indices possible in an AR coating, enabling the design of both single index and graded index AR coatings on PMMA substrates. The diameter and shell thickness of the silica nanoparticles are the two independent, controllable parameters that we manipulated to tune the refractive index of the coating. The AR coatings reduced the minimum reflection of PMMA from 7% to 0.5%, while the maximum transmission increased from 92% to 98% at the optimized wavelength region that could be adjusted from the near UV into the visible. Cross sectional SEM showed that conformal coatings can be achieved on grooved PMMA Fresnel lenses. AFM was used to study surface topography on flat substrates.

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