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1.
Environ Microbiol ; 22(3): 1104-1124, 2020 03.
Artículo en Inglés | MEDLINE | ID: mdl-31845498

RESUMEN

Sinorhizobium fredii HH103 RifR is a broad host-range rhizobial strain able to nodulate with soybean and Lotus burttii, but it is ineffective with L. japonicus. Here, we study the role of the HH103 RifR SyrM protein in the regulation of gene expression and its relevance in symbiosis with those three legumes. RNAseq analyses show that HH103 SyrM is an important transcriptional regulator not only in the presence of inducer flavonoids but also in its absence. Lack of SyrM increases Nod factors production and decreases genistein-mediated repression of exopolysaccharide production in HH103. In symbiosis, mutation of syrM partially impaired interaction with soybean but improves effectiveness with L. burttii and extends the host-rage to L. japonicus Gifu. In addition, HH103 syrM mutants enter in both Lotus species by infection threads, whereas HH103 uses the more primitive intercellular infection to enter into L. burttii roots These symbiotic phenotypes were previously observed in two other HH103 mutants affected in symbiotic regulators, nodD2 and nolR, revealing that in S. fredii HH103 numerous transcriptional regulators finely modulate symbiotic gene expression.


Asunto(s)
Genes Bacterianos/genética , Glycine max/microbiología , Lotus/microbiología , Nodulación de la Raíz de la Planta/genética , Simbiosis/genética , Proteínas Bacterianas/metabolismo , Silenciador del Gen , Especificidad del Huésped/genética , Mutación , Fenotipo , Raíces de Plantas/metabolismo , Rhizobium/genética , Sinorhizobium fredii/genética
2.
Environ Microbiol ; 21(5): 1718-1739, 2019 05.
Artículo en Inglés | MEDLINE | ID: mdl-30839140

RESUMEN

Sinorhizobium fredii HH103 RifR , a broad-host-range rhizobial strain, forms ineffective nodules with Lotus japonicus but induces nitrogen-fixing nodules in Lotus burttii roots that are infected by intercellular entry. Here we show that HH103 RifR nolR or nodD2 mutants gain the ability to induce infection thread formation and to form nitrogen-fixing nodules in L. japonicus Gifu. Microscopy studies showed that the mode of infection of L. burttii roots by the nodD2 and nolR mutants switched from intercellular entry to infection threads (ITs). In the presence of the isoflavone genistein, both mutants overproduced Nod-factors. Transcriptomic analyses showed that, in the presence of Lotus japonicus Gifu root exudates, genes related to Nod factors production were overexpressed in both mutants in comparison to HH103 RifR . Complementation of the nodD2 and nolR mutants provoked a decrease in Nod-factor production, the incapacity to form nitrogen-fixing nodules with L. japonicus Gifu and restored the intercellular way of infection in L. burttii. Thus, the capacity of S. fredii HH103 RifR nodD2 and nolR mutants to infect L. burttii and L. japonicus Gifu by ITs and fix nitrogen L. japonicus Gifu might be correlated with Nod-factor overproduction, although other bacterial symbiotic signals could also be involved.


Asunto(s)
Lotus/microbiología , Enfermedades de las Plantas/microbiología , Sinorhizobium fredii/fisiología , Especificidad del Huésped , Mutación , Raíces de Plantas/microbiología , Sinorhizobium fredii/genética , Sinorhizobium fredii/aislamiento & purificación
3.
Mol Plant Microbe Interact ; 29(12): 925-937, 2016 12.
Artículo en Inglés | MEDLINE | ID: mdl-27827003

RESUMEN

Sinorhizobium fredii HH103-Rifr, a broad host range rhizobial strain, induces nitrogen-fixing nodules in Lotus burttii but ineffective nodules in L. japonicus. Confocal microscopy studies showed that Mesorhizobium loti MAFF303099 and S. fredii HH103-Rifr invade L. burttii roots through infection threads or epidermal cracks, respectively. Infection threads in root hairs were not observed in L. burttii plants inoculated with S. fredii HH103-Rifr. A S. fredii HH103-Rifr nodA mutant failed to nodulate L. burttii, demonstrating that Nod factors are strictly necessary for this crack-entry mode, and a noeL mutant was also severely impaired in L. burttii nodulation, indicating that the presence of fucosyl residues in the Nod factor is symbiotically relevant. However, significant symbiotic impacts due to the absence of methylation or to acetylation of the fucosyl residue were not detected. In contrast S. fredii HH103-Rifr mutants showing lipopolysaccharide alterations had reduced symbiotic capacity, while mutants affected in production of either exopolysaccharides, capsular polysaccharides, or both were not impaired in nodulation. Mutants unable to produce cyclic glucans and purine or pyrimidine auxotrophic mutants formed ineffective nodules with L. burttii. Flagellin-dependent bacterial mobility was not required for crack infection, since HH103-Rifr fla mutants nodulated L. burttii. None of the S. fredii HH103-Rifr surface-polysaccharide mutants gained effective nodulation with L. japonicus.


Asunto(s)
Lotus/microbiología , Polisacáridos Bacterianos/metabolismo , Sinorhizobium fredii/fisiología , Simbiosis , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Especificidad del Huésped , Lotus/citología , Lotus/fisiología , Mutación , Fenotipo , Nodulación de la Raíz de la Planta , Raíces de Plantas/citología , Raíces de Plantas/microbiología , Raíces de Plantas/fisiología , Polisacáridos Bacterianos/química , Purinas/metabolismo , Pirimidinas/metabolismo , Sinorhizobium fredii/citología , Sinorhizobium fredii/genética
4.
Mol Plant Microbe Interact ; 29(9): 700-712, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-27482821

RESUMEN

Sinorhizobium fredii HH103 is a rhizobial strain showing a broad host range of nodulation. In addition to the induction of bacterial nodulation genes, transition from a free-living to a symbiotic state requires complex genetic expression changes with the participation of global regulators. We have analyzed the role of the zinc-finger transcriptional regulator MucR1 from S. fredii HH103 under both free-living conditions and symbiosis with two HH103 host plants, Glycine max and Lotus burttii. Inactivation of HH103 mucR1 led to a severe decrease in exopolysaccharide (EPS) biosynthesis but enhanced production of external cyclic glucans (CG). This mutant also showed increased cell aggregation capacity as well as a drastic reduction in nitrogen-fixation capacity with G. max and L. burttii. However, in these two legumes, the number of nodules induced by the mucR1 mutant was significantly increased and decreased, respectively, with respect to the wild-type strain, indicating that MucR1 can differently affect nodulation depending on the host plant. RNA-Seq analysis carried out in the absence and the presence of flavonoids showed that MucR1 controls the expression of hundreds of genes (including some related to EPS production and CG transport), some of them being related to the nod regulon.


Asunto(s)
Proteínas Bacterianas/metabolismo , Glycine max/microbiología , Lotus/microbiología , Regulón/genética , Sinorhizobium fredii/fisiología , Simbiosis , Proteínas Bacterianas/genética , Flavonoides/metabolismo , Fijación del Nitrógeno , Nodulación de la Raíz de la Planta , Análisis de Secuencia de ARN , Sinorhizobium fredii/genética
5.
Int J Mol Sci ; 17(5)2016 May 18.
Artículo en Inglés | MEDLINE | ID: mdl-27213334

RESUMEN

Sinorhizobium (Ensifer) fredii (S. fredii) is a rhizobial species exhibiting a remarkably broad nodulation host-range. Thus, S. fredii is able to effectively nodulate dozens of different legumes, including plants forming determinate nodules, such as the important crops soybean and cowpea, and plants forming indeterminate nodules, such as Glycyrrhiza uralensis and pigeon-pea. This capacity of adaptation to different symbioses makes the study of the molecular signals produced by S. fredii strains of increasing interest since it allows the analysis of their symbiotic role in different types of nodule. In this review, we analyze in depth different S. fredii molecules that act as signals in symbiosis, including nodulation factors, different surface polysaccharides (exopolysaccharides, lipopolysaccharides, cyclic glucans, and K-antigen capsular polysaccharides), and effectors delivered to the interior of the host cells through a symbiotic type 3 secretion system.


Asunto(s)
Proteínas Bacterianas/metabolismo , Glycine max/microbiología , Sinorhizobium fredii/fisiología , Proteínas Bacterianas/química , Estructura Molecular , Nodulación de la Raíz de la Planta , Polisacáridos Bacterianos/metabolismo , Sinorhizobium fredii/metabolismo , Simbiosis , Sistemas de Secreción Tipo III
6.
Mol Plant Microbe Interact ; 25(6): 825-38, 2012 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-22397406

RESUMEN

The Sinorhizobium fredii HH103 rkp-3 region has been isolated and sequenced. Based on the similarities between the S. fredii HH103 rkpL, rkpM, rkpN, rkpO, rkpP, and rkpQ genes and their corresponding orthologues in Helicobacter pylori, we propose a possible pathway for the biosynthesis of the S. fredii HH103 K-antigen polysaccharide (KPS) repeating unit. Three rkp-3 genes (rkpM, rkpP, and rkpQ) involved in the biosynthesis of the HH103 KPS repeating unit (a derivative of the pseudaminic acid) have been mutated and analyzed. All the rkp-3 mutants failed to produce KPS and their lipopolysaccharide (LPS) profiles were altered. These mutants showed reduced motility and auto-agglutinated when early-stationary cultures were further incubated under static conditions. Glycine max, Vigna unguiculata (determinate nodule-forming legumes), and Cajanus cajan (indeterminate nodules) plants inoculated with mutants in rkpM, rkpQ, or rkpP only formed pseudonodules that did not fix nitrogen and were devoid of bacteria. In contrast, another indeterminate nodule-forming legume, Glycyrrhiza uralensis, was still able to form some nitrogen-fixing nodules with the three S. fredii HH103 rifampicin-resistant rkp-3 mutants tested. Our results suggest that the severe symbiotic impairment of the S. fredii rkp-3 mutants with soybean, V. unguiculata, and C. cajan is mainly due to the LPS alterations rather than to the incapacity to produce KPS.


Asunto(s)
Antígenos Bacterianos/biosíntesis , Glycine max/microbiología , Lipopolisacáridos/metabolismo , Polisacáridos Bacterianos/biosíntesis , Sinorhizobium fredii/genética , Sinorhizobium fredii/metabolismo , Antígenos Bacterianos/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Conformación de Carbohidratos , Regulación Bacteriana de la Expresión Génica/fisiología , Concentración de Iones de Hidrógeno , Lipopolisacáridos/química , Lipopolisacáridos/genética , Nodulación de la Raíz de la Planta/fisiología , Raíces de Plantas/microbiología , Polisacáridos Bacterianos/genética
7.
Arch Microbiol ; 194(2): 87-102, 2012 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-21761170

RESUMEN

The Sinorhizobium fredii HH103 rkp-1 region, which is involved in capsular polysaccharide (KPS) biosynthesis, is constituted by the rkpU, rkpAGHIJ, and kpsF3 genes. Two mutants in this region affecting the rkpA (SVQ536) and rkpI (SVQ538) genes were constructed. Polyacrylamide gel electrophoresis and (1)H-NMR analyses did not detect KPS in these mutants. RT-PCR experiments indicated that, most probably, the rkpAGHI genes are cotranscribed. Glycine max cultivars (cvs.) Williams and Peking inoculated with mutants SVQ536 and SVQ538 showed reduced nodulation and symptoms of nitrogen starvation. Many pseudonodules were also formed on the American cv. Williams but not on the Asiatic cv. Peking, suggesting that in the determinate nodule-forming S. fredii-soybean symbiosis, bacterial KPS might be involved in determining cultivar-strain specificity. S. fredii HH103 mutants unable to produce KPS or exopolysaccharide (EPS) also showed reduced symbiotic capacity with Glycyrrhiza uralensis, an indeterminate nodule-forming legume. A HH103 exoA-rkpH double mutant unable to produce KPS and EPS was still able to form some nitrogen-fixing nodules on G. uralensis. Thus, here we describe for the first time a Sinorhizobium mutant strain, which produces neither KPS nor EPS is able to induce the formation of functional nodules in an indeterminate nodule-forming legume.


Asunto(s)
Glycyrrhiza uralensis/microbiología , Polisacáridos Bacterianos/metabolismo , Sinorhizobium fredii/metabolismo , Simbiosis/genética , Proteínas Bacterianas/genética , Flavonoides/farmacología , Regulación Bacteriana de la Expresión Génica/efectos de los fármacos , Genes Bacterianos/genética , Prueba de Complementación Genética , Glycyrrhiza uralensis/metabolismo , Concentración de Iones de Hidrógeno , Datos de Secuencia Molecular , Mutación , Fijación del Nitrógeno/genética , Polisacáridos Bacterianos/genética , Nódulos de las Raíces de las Plantas/metabolismo , Sinorhizobium/genética , Sinorhizobium/metabolismo , Sinorhizobium fredii/genética , Glycine max/genética , Glycine max/metabolismo , Glycine max/microbiología
8.
Microbiology (Reading) ; 156(Pt 11): 3398-3411, 2010 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-20688828

RESUMEN

In this work, the role of the rkpU and rkpJ genes in the production of the K-antigen polysaccharides (KPS) and in the symbiotic capacity of Sinorhizobium fredii HH103, a broad host-range rhizobial strain able to nodulate soybean and many other legumes, was studied. The rkpJ- and rkpU-encoded products are orthologous to Escherichia coli proteins involved in capsule export. S. fredii HH103 mutant derivatives were contructed in both genes. To our knowledge, this is the first time that the role of rkpU in KPS production has been studied in rhizobia. Both rkpJ and rkpU mutants were unable to produce KPS. The rkpU derivative also showed alterations in its lipopolysaccharide (LPS). Neither KPS production nor rkpJ and rkpU expression was affected by the presence of the flavonoid genistein. Soybean (Glycine max) plants inoculated with the S. fredii HH103 rkpU and rkpJ mutants showed reduced nodulation and clear symptoms of nitrogen starvation. However, neither the rkpJ nor the rkpU mutants were significantly impaired in their symbiotic interaction with cowpea (Vigna unguiculata). Thus, we demonstrate for the first time to our knowledge the involvement of the rkpU gene in rhizobial KPS production and also show that the symbiotic relevance of the S. fredii HH103 KPS depends on the specific bacterium-legume interaction.


Asunto(s)
Glycine max/microbiología , Nodulación de la Raíz de la Planta , Polisacáridos Bacterianos/biosíntesis , Sinorhizobium fredii/genética , Simbiosis , Antígenos Bacterianos/biosíntesis , ADN Bacteriano/genética , Fabaceae/microbiología , Genes Bacterianos , Prueba de Complementación Genética , Genisteína/farmacología , Mutación , Sinorhizobium fredii/crecimiento & desarrollo , Sinorhizobium fredii/metabolismo , Especificidad de la Especie
9.
Bioorg Med Chem ; 18(13): 4648-60, 2010 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-20570156

RESUMEN

The synthesis of a novel aminomethyl C-3 substituted L-fuco-azafagomine and of its C-6 epimer from D-lyxose is reported. The key step of the synthesis is the introduction of the biimino (-NH-NH-) moiety by reductive hydrazination of a 1-deoxy-ketohexose with tert-butyl carbazate. The 3-aminomethyl-azafagomine derivatives were used as lead compounds in the generation of libraries of novel types of derivatives by attaching different hydrophobic groups on the aminomethyl substituent through amide linkages. These polyhydroxylated hexahydropyridazines can be viewed as a new type of diaza-C-glycoside analogues having a biimino (-NH-NH-) moiety. The conformational analysis and the glycosidase inhibitory properties of all the new C-3 substituted azafagomines synthesized are also reported. Those having L-fuco configuration have shown a selective inhibition of α-L-fucosidases.


Asunto(s)
Inhibidores Enzimáticos/síntesis química , Iminopiranosas/química , alfa-L-Fucosidasa/antagonistas & inhibidores , Compuestos Aza/química , Inhibidores Enzimáticos/química , Inhibidores Enzimáticos/farmacología , Hidrazinas/química , Iminopiranosas/síntesis química , Iminopiranosas/farmacología , Conformación Molecular , alfa-L-Fucosidasa/metabolismo
10.
Mol Plant Microbe Interact ; 22(5): 575-88, 2009 May.
Artículo en Inglés | MEDLINE | ID: mdl-19348575

RESUMEN

Sinorhizobium fredii HH103 produces cyclic beta glucans (CG) composed of 18 to 24 glucose residues without or with 1-phosphoglycerol as the only substituent. The S. fredii HH103-Rifr cgs gene (formerly known as ndvB) was sequenced and mutated with the lacZ-gentamicin resistance cassette. Mutant SVQ562 did not produce CG, was immobile, and grew more slowly in the hypoosmotic GYM medium, but its survival in distilled water was equal to that of HH103-Rifr. Lipopolysaccharides and K-antigen polysaccharides produced by SVQ562 were not apparently altered. SVQ562 overproduced exopolysaccharides (EPS) and its exoA gene was transcribed at higher levels than in HH103-Rifr. In GYM medium, the EPS produced by SVQ562 was of higher molecular weight and carried higher levels of substituents than that produced by HH103-Rifr. The expression of the SVQ562 cgsColon, two colonslacZ fusion was influenced by the pH and the osmolarity of the growth medium. The S. fredii cgs mutants SVQ561 (carrying cgs::Omega) and SVQ562 only formed pseudonodules on Glycine max (determinate nodules) and on Glycyrrhiza uralensis (indeterminate nodules). Although nodulation factors were detected in SVQ561 cultures, none of the cgs mutants induced any macroscopic response in Vigna unguiculata roots. Thus, the nodulation process induced by S. fredii cgs mutants is aborted at earlier stages in V. unguiculata than in Glycine max.


Asunto(s)
Proteínas Bacterianas/genética , Mutación , Polisacáridos Bacterianos/metabolismo , Nódulos de las Raíces de las Plantas/crecimiento & desarrollo , Sinorhizobium fredii/genética , Proteínas Bacterianas/metabolismo , ADN de Plantas/química , ADN de Plantas/genética , Flavonoides/farmacología , Regulación Bacteriana de la Expresión Génica/efectos de los fármacos , Prueba de Complementación Genética , Glycyrrhiza uralensis/crecimiento & desarrollo , Glycyrrhiza uralensis/microbiología , Interacciones Huésped-Patógeno , Concentración de Iones de Hidrógeno , Espectroscopía de Resonancia Magnética , Datos de Secuencia Molecular , Polisacáridos Bacterianos/análisis , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Nódulos de las Raíces de las Plantas/microbiología , Análisis de Secuencia de ADN , Sinorhizobium fredii/metabolismo , Sinorhizobium fredii/fisiología , Cloruro de Sodio/farmacología , Glycine max/crecimiento & desarrollo , Glycine max/microbiología , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , beta-Glucanos/análisis , beta-Glucanos/metabolismo
11.
Biomacromolecules ; 9(2): 678-85, 2008 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-18208318

RESUMEN

The lipopolysaccharide of Sinorhizobium fredii SMH12, a wide-range host bacterium isolated from nodulated soybean plants growing in Vietnam, has been studied. Isolation of lipopolysaccharide by the phenol-water method leads to a mixture of two polysaccharides; polyacrylamide gel electrophoresis indicates that both are possibly lipopolysaccharides. The structures of the O-antigen of the main lipopolysaccharide and its deacetylated form are determined by sugar and methylation analysis, partial hydrolysis, lithium degradation, ESI-MS/MS, and NMR studies. Here we show that the fast-growing S. fredii SMH12 produces a lipopolysaccharide whose O-antigen has a repeating unit consisting of the trisaccharide -->4)-alpha-D-Gal pA-(1-->3)-2-O-Ac-alpha-L-Rha p-(1-->3)-2-O-Ac-alpha-D-Man p-(1-->. The position O-6 of the mannose residue in the repeating unit is unsubstituted, acetylated, or methylated in an approximate ratio 1:1:2. The tandem mass spectrometry studies rule out both an alternating and a random distribution of methyl groups and suggest the existence of zones in the polysaccharide rich in methyl groups interspersed with zones without methyl groups.


Asunto(s)
Antígenos O/química , Antígenos O/aislamiento & purificación , Sinorhizobium fredii , Lipopolisacáridos/química , Lipopolisacáridos/aislamiento & purificación , Estructura Molecular , Polisacáridos Bacterianos/química , Polisacáridos Bacterianos/aislamiento & purificación
12.
Carbohydr Res ; 462: 1-6, 2018 Jun 15.
Artículo en Inglés | MEDLINE | ID: mdl-29604473

RESUMEN

Aeromonas sp. AMG272 is a Gram-negative bacterium that has been isolated from agricultural soil and studied for its plant growth-promoting activities. Structures of the O-specific polysaccharide chain of the AMG272 lipopolysaccharide and its capsular polysaccharide were elucidated using GLC-MS and NMR spectroscopy. The structure of the O-specific polysaccharide, →4)-α-l-Rhap-(1 → 3)-ß-d-GlcpNAc-(1→, has been found in other Aeromonas strains and related bacteria, whereas the structure of the capsular polysaccharide has not been reported before: →6)[ß-d-Fucp3NAc4Ac-(1 → 3)]-α-d-GlcpNAc-(1 → 4)-α-d-Galp-(1 → 3)-α-d-GalpNAc-(1 → 4)-α-d-Galp-(1 → .


Asunto(s)
Aeromonas/citología , Lipopolisacáridos/química , Antígenos O/química , Oryza/microbiología , Secuencia de Carbohidratos , Espectroscopía de Resonancia Magnética , Rizosfera
13.
Front Microbiol ; 8: 1405, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28790996

RESUMEN

An extracellular layer of exopolysaccharides (EPS) covers the surface of some Bifidobacterium animalis subsp. lactis strains, which could be of relevance for its probiotic performance. In order to understand the functional characteristics of B. animalis subsp. lactis, two isogenic strains that differ in their EPS-producing phenotype, due to a single mutation in the gene Balat_1410, were studied. By means of a double crossover recombination strategy, successfully used for the first time in bifidobacteria, Balat_1410 in the type strain B. animalis subsp. lactis DSM10140 was replaced by a mutated gene containing a non-synonymous mutation previously associated with the appearance of a mucoid-ropy phenotype. Nuclear magnetic resonance and SEC-MALS analyses showed that the novel strain harboring the mutation acquired a ropy phenotype, due to the production of a high molecular weight (HMW)-EPS that is not produced in the wild-type strain. Fluorescence labeling of both strains with two fluorescent proteins, m-Cherry and Green Fluorescent Protein, was achieved by expressing the corresponding genes under the control of a native selected promoter (the elongation factor Tu promoter). Remarkably, qualitative and quantitative fluorescence analyses demonstrated that the ropy strain displays a lower capability to adhere to human intestinal epithelial cells. In addition, the presence of the HMW-EPS reduced the capability of the producing strain to form biofilms upon three different abiotic surfaces. This work also highlights the fact that different EPS confer variable functional characteristics to the bifidobacterial surface, which may be relevant for the performance of B. animalis subsp. lactis as a probiotic. The construction of molecular tools allowing the functional characterization of surface structures in next generation probiotics is still a challenging issue that deserves further attention, given the relevant role that such molecules must play in the interaction with the host.

14.
Sci Rep ; 7(1): 675, 2017 04 06.
Artículo en Inglés | MEDLINE | ID: mdl-28386109

RESUMEN

The question of how genotypic and ecological units arise and spread in natural microbial populations remains controversial in the field of evolutionary biology. Here, we investigated the early stages of ecological and genetic differentiation in a highly clonal sympatric Sinorhizobium meliloti population. Whole-genome sequencing revealed that a large DNA region of the symbiotic plasmid pSymB was replaced in some isolates with a similar synteny block carrying densely clustered SNPs and displaying gene acquisition and loss. Two different versions of this genomic island of differentiation (GID) generated by multiple genetic exchanges over time appear to have arisen recently, through recombination in a particular clade within this population. In addition, these isolates display resistance to phages from the same geographic region, probably due to the modification of surface components by the acquired genes. Our results suggest that an underlying process of early ecological and genetic differentiation in S. meliloti is primarily triggered by acquisition of genes that confer resistance to soil phages within particular large genomic DNA regions prone to recombination.


Asunto(s)
Fenómenos Ecológicos y Ambientales , Evolución Molecular , Variación Genética , Sinorhizobium meliloti/genética , Biología Computacional/métodos , Flujo Génico , Flujo Genético , Genoma Bacteriano , Estudio de Asociación del Genoma Completo , Genómica , Filogenia , Polimorfismo de Nucleótido Simple , Simbiosis
15.
Mol Plant Microbe Interact ; 19(1): 43-52, 2006 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-16404952

RESUMEN

The Sinorhizobium fredii HH103 rkp-1 region, which is involved in capsular polysaccharides (KPS) production, was isolated and sequenced. The organization of the S. fredii genes identified, rkpUAGHIJ and kpsF3, was identical to that described for S. meliloti 1021 but different from that of S. meliloti AK631. The long rkpA gene (7.5 kb) of S. fredii HH103 and S. meliloti 1021 appears as a fusion of six clustered AK631 genes, rkpABCDEF. S. fredii HH103-Rif(r) mutants affected in rkpH or rkpG were constructed. An exoA mutant unable to produce exopolysaccharide (EPS) and a double mutant exoA rkpH also were obtained. Glycine max (soybean) and Cajanus cajan (pigeon pea) plants inoculated with the rkpH, rkpG, and rkpH exoA derivatives of S. fredii HH103 showed reduced nodulation and severe symptoms of nitrogen starvation. The symbiotic capacity of the exoA mutant was not significantly altered. All these results indicate that KPS, but not EPS, is of crucial importance for the symbiotic capacity of S. fredii HH103-Rif(r). S. meliloti strains that produce only EPS or KPS are still effective with alfalfa. In S. fredii HH103, however, EPS and KPS are not equivalent, because mutants in rkp genes are symbiotically impaired regardless of whether or not EPS is produced.


Asunto(s)
Cajanus/microbiología , Glycine max/microbiología , Mutación/genética , Polisacáridos Bacterianos/metabolismo , Sinorhizobium fredii/genética , Sinorhizobium fredii/fisiología , Genes Bacterianos , Datos de Secuencia Molecular , Resonancia Magnética Nuclear Biomolecular , Polisacáridos Bacterianos/análisis , Polisacáridos Bacterianos/biosíntesis , Sinorhizobium fredii/clasificación , Glycine max/citología
16.
FEMS Microbiol Lett ; 255(1): 164-73, 2006 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-16436076

RESUMEN

Rhizobium gallicum is a fast-growing bacterium found in European, Australian and African soils; it was first isolated in France. It is a microsymbiont which is able to nodulate plants of the genus Phaseolus. Rhizobium gallicum bv. gallicum R602 produces four extracellular signal molecules consisting of a linear backbone of N-acetyl glucosamine, bearing on the nonreducing terminal residue an N-methyl group and different N-acyl substituents. The four acyloligosaccharides terminate with a sulfated N-acetylglucosaminitol. This unit may be also acetylated. These structures were determined using carbohydrate and methylation analysis, mass spectrometric analysis and one-dimensional- and two-dimensional-nuclear magnetic resonance experiments. This work establishes the common structure that a lipochito-oligosaccharide must have so that the Rhizobium that produces and excretes it is able to nodulate plants of Phaseolus vulgaris. The substituents common to all the molecules are an N-methyl group and a C(18:1) fatty acid on the nonreducing terminal residue.


Asunto(s)
Lipopolisacáridos/química , Phaseolus/microbiología , Rhizobium/química , Glucosamina/análogos & derivados , Glucosamina/análisis , Lipopolisacáridos/aislamiento & purificación , Espectroscopía de Resonancia Magnética , Espectrometría de Masas , Rhizobium/metabolismo
17.
Int J Food Microbiol ; 214: 54-62, 2015 Dec 02.
Artículo en Inglés | MEDLINE | ID: mdl-26241490

RESUMEN

Many lactic acid bacteria synthesize extracellular polysaccharides (exopolysaccharides, EPSs) with a large variation in structure and potential functional properties. Although EPS production can produce detrimental effects in alcoholic beverages, these polymers play an important role in the rheological behavior and texture of fermented products. In this work, EPS production by two Lactobacillus suebicus strains, which were isolated from ropy ciders, was examined in a semidefined medium. The existence of priming glycosyltransferase encoding genes was detected by PCR. In addition, the preliminary characterization of the polymers was undertaken. Molecular masses were determined by size exclusion chromatography revealing the presence of two peaks, corresponding to polymers of high- and low-molecular-weight in all fractions. The composition of the EPS fractions was analyzed by gas chromatography-mass spectrometry after acid hydrolysis, revealing that they contained glucose, galactose, N-acetylglucosamine and phosphate, although in different ratios, suggesting that a mixture of polysaccharides is being synthesized. We also examined the influence of the sugar source (glucose, ribose, xylose, or arabinose) and pH conditions on growth and EPS production.


Asunto(s)
Bebidas Alcohólicas/microbiología , Microbiología de Alimentos , Lactobacillus/metabolismo , Polisacáridos Bacterianos/biosíntesis , Polisacáridos Bacterianos/química , Fermentación , Lactobacillus/crecimiento & desarrollo , Lactobacillus/aislamiento & purificación
18.
Carbohydr Res ; 338(7): 651-71, 2003 Mar 28.
Artículo en Inglés | MEDLINE | ID: mdl-12644378

RESUMEN

In this study, we describe the first optimized molecular models of the mega-oligosaccharide rhamnogalaturonan II, that is found in the primary cell walls of all higher plants. The 750 MHz 1H NMR data previously reported and new heteronuclear correlation spectra (sensitivity-enhanced HSQC and HSQC-TOCSY) were first reassigned in light of the modifications in the primary structure. In turn, the experimental NMR data revealed the presence of an additional sugar, alpha-Araf (E-chain), and also the disaccharidic repeating unit of RG-I, another component of the pectic matrix. Due to a fuller picture of the primary structure of RG-II, a much more complete assignment of the NOE data has been achieved. A systematic computational study based on these NOEs lead us to a realistic three-dimensional description of the RG-II, in excellent agreement with the molecular dimensions obtained from various experimental methods.


Asunto(s)
Modelos Moleculares , Resonancia Magnética Nuclear Biomolecular/métodos , Pectinas/química , Conformación de Carbohidratos , Secuencia de Carbohidratos , Datos de Secuencia Molecular , Estructura Molecular , Oligosacáridos/química , Pectinas/aislamiento & purificación
19.
Carbohydr Res ; 338(3): 237-50, 2003 Jan 31.
Artículo en Inglés | MEDLINE | ID: mdl-12543556

RESUMEN

Rhizobium giardinii bv. giardinii is a microsymbiont of plants of the genus Phaseolus and produces extracellular signal molecules that are able to induce deformation of root hairs and nodule organogenesis. We report here the structures of seven lipochitooligosaccharide (LCO) signal molecules secreted by R. giardinii bv. giardinii H152. Six of them are pentamers of GlcNAc carrying C 16:0, C 18:0, C 20:0 and C 18:1 fatty acyl chains on the non-reducing terminal residue. Four are sulfated at C-6 of the reducing terminal residue and one is acetylated in the same position. Six of them are N-methylated on the non-reducing GlcN residue and all the nodulation factors are carbamoylated on C-6 of the non-reducing terminal residue. The structures were determined using monosaccharide composition and methylation analyses, 1D- and 2D-NMR experiments and a range of mass spectrometric techniques. The position of the carbamoyl substituent on the non-reducing glucosamine residue was determined using a CID-MSMS experiment and an HMBC experiment.


Asunto(s)
Lipopolisacáridos/química , Rhizobium/química , Conformación de Carbohidratos , Secuencia de Carbohidratos , Ácidos Grasos/análisis , Lipopolisacáridos/aislamiento & purificación , Espectroscopía de Resonancia Magnética , Espectrometría de Masas , Estructura Molecular , Monosacáridos/análisis
20.
PLoS One ; 9(12): e115391, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25521500

RESUMEN

Here we report that the structure of the Sinorhizobium fredii HH103 exopolysaccharide (EPS) is composed of glucose, galactose, glucuronic acid, pyruvic acid, in the ratios 5∶2∶2∶1 and is partially acetylated. A S. fredii HH103 exoA mutant (SVQ530), unable to produce EPS, not only forms nitrogen fixing nodules with soybean but also shows increased competitive capacity for nodule occupancy. Mutant SVQ530 is, however, less competitive to nodulate Vigna unguiculata. Biofilm formation was reduced in mutant SVQ530 but increased in an EPS overproducing mutant. Mutant SVQ530 was impaired in surface motility and showed higher osmosensitivity compared to its wild type strain in media containing 50 mM NaCl or 5% (w/v) sucrose. Neither S. fredii HH103 nor 41 other S. fredii strains were recognized by soybean lectin (SBL). S. fredii HH103 mutants affected in exopolysaccharides (EPS), lipopolysaccharides (LPS), cyclic glucans (CG) or capsular polysaccharides (KPS) were not significantly impaired in their soybean-root attachment capacity, suggesting that these surface polysaccharides might not be relevant in early attachment to soybean roots. These results also indicate that the molecular mechanisms involved in S. fredii attachment to soybean roots might be different to those operating in Bradyrhizobium japonicum.


Asunto(s)
Fijación del Nitrógeno , Polisacáridos Bacterianos/química , Sinorhizobium fredii/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Secuencia de Carbohidratos , Fabaceae/microbiología , Glicosiltransferasas/genética , Glicosiltransferasas/metabolismo , Datos de Secuencia Molecular , Mutación , Presión Osmótica , Polisacáridos Bacterianos/metabolismo , Sinorhizobium fredii/genética , Sinorhizobium fredii/fisiología , Simbiosis
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