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1.
Plant Cell ; 29(4): 791-807, 2017 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-28258158

RESUMEN

The influence of the histone variant H2A.Z on transcription remains a long-standing conundrum. Here, by analyzing the actin-related protein6 mutant, which is impaired in H2A.Z deposition, and by H2A.Z profiling in stress conditions, we investigated the impact of this histone variant on gene expression in Arabidopsis thaliana We demonstrate that the arp6 mutant exhibits anomalies in response to osmotic stress. Indeed, stress-responsive genes are overrepresented among those hyperactive in arp6. In wild-type plants, these genes exhibit high levels of H2A.Z in the gene body. Furthermore, we observed that in drought-responsive genes, levels of H2A.Z in the gene body correlate with transcript levels. H2A.Z occupancy, but not distribution, changes in parallel with transcriptional changes. In particular, we observed H2A.Z loss upon transcriptional activation and H2A.Z gain upon repression. These data suggest that H2A.Z has a repressive role in transcription and counteracts unwanted expression in noninductive conditions. However, reduced activity of some genes in arp6 is associated with distinct behavior of H2A.Z at their +1 nucleosome, which exemplifies the requirement of this histone for transcription. Our data support a model where H2A.Z in gene bodies has a strong repressive effect on transcription, whereas in +1 nucleosomes, it is important for maintaining the activity of some genes.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Histonas/metabolismo , Arabidopsis/genética , Proteínas de Arabidopsis/genética , Sequías , Histonas/genética , Nucleosomas/genética , Nucleosomas/metabolismo , Regiones Promotoras Genéticas/genética , Regiones Promotoras Genéticas/fisiología , Sitio de Iniciación de la Transcripción/fisiología , Activación Transcripcional/genética , Activación Transcripcional/fisiología
2.
Plant Mol Biol ; 88(4-5): 445-57, 2015 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-26059040

RESUMEN

In this report we characterized the Arabidopsis ABI1 gene orthologue and Brassica napus gene paralogues encoding protein phosphatase 2C (PP2C, group A), which is known to be a negative regulator of the ABA signaling pathway. Six homologous B. napus sequences were identified and characterized as putative PP2C group A members. To gain insight into the conservation of ABI1 function in Brassicaceae, and understand better its regulatory effects in the drought stress response, we generated transgenic B. napus plants overexpressing A. thaliana ABI1. Transgenic plants subjected to drought showed a decrease in relative water content, photosynthetic pigments content and expression level of RAB18- and RD19A-drought-responsive marker genes relative to WT plants. We present the characterization of the drought response of B. napus with the participation of ABI1-like paralogues. The expression pattern of two evolutionarily distant paralogues, BnaA01.ABI1.a and BnaC07.ABI1.b in B. napus and their promoter activity in A. thaliana showed differences in the induction of the paralogues under dehydration stress. Comparative sequence analysis of both BnaABI1 promoters showed variation in positions of cis-acting elements that are especially important for ABA- and stress-inducible expression. Together, these data reveal that subfunctionalization following gene duplication may be important in the maintenance and functional divergence of the BnaABI1 paralogues. Our results provide a framework for a better understanding of (1) the role of ABI1 as a hub protein regulator of the drought response, and (2) the differential involvement of the duplicated BnaABI1 genes in the response of B. napus to dehydration-related stresses.


Asunto(s)
Brassica napus/genética , Brassica napus/metabolismo , Genes de Plantas , Fosfoproteínas Fosfatasas/genética , Proteínas de Plantas/genética , Ácido Abscísico/metabolismo , Secuencia de Aminoácidos , Arabidopsis/enzimología , Arabidopsis/genética , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Secuencia de Bases , Clorofila/metabolismo , ADN de Plantas/genética , Sequías , Regulación Enzimológica de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Datos de Secuencia Molecular , Fosfoproteínas Fosfatasas/metabolismo , Filogenia , Reguladores del Crecimiento de las Plantas/metabolismo , Proteínas de Plantas/metabolismo , Plantas Modificadas Genéticamente , Regiones Promotoras Genéticas , Proteína Fosfatasa 2C , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Transducción de Señal , Estrés Fisiológico , Agua/metabolismo
3.
Plant Cell Physiol ; 56(12): 2351-67, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-26443375

RESUMEN

Phosphorylation and dephosphorylation events play an important role in the transmission of the ABA signal. Although SnRK2 [sucrose non-fermenting1-related kinase2] protein kinases and group A protein phosphatase type 2C (PP2C)-type phosphatases constitute the core ABA pathway, mitogen-activated protein kinase (MAPK) pathways are also involved in plant response to ABA. However, little is known about the interplay between MAPKs and PP2Cs or SnRK2 in the regulation of ABA pathways. In this study, an effort was made to elucidate the role of MAP kinase kinase kinase18 (MKKK18) in relation to ABA signaling and response. The MKKK18 knockout lines showed more vigorous root growth, decreased abaxial stomatal index and increased stomatal aperture under normal growth conditions, compared with the control wild-type Columbia line. In addition to transcriptional regulation of the MKKK18 promoter by ABA, we demonstrated using in vitro and in vivo kinase assays that the kinase activity of MKKK18 was regulated by ABA. Analysis of the cellular localization of MKKK18 showed that the active kinase was targeted specifically to the nucleus. Notably, we identified abscisic acid insensitive 1 (ABI1) PP2C as a MKKK18-interacting protein, and demonstrated that ABI1 inhibited its activity. Using a cell-free degradation assay, we also established that MKKK18 was unstable and was degraded by the proteasome pathway. The rate of MKKK18 degradation was delayed in the ABI1 knockout line. Overall, we provide evidence that ABI1 regulates the activity and promotes proteasomal degradation of MKKK18.


Asunto(s)
Ácido Abscísico/farmacología , Proteínas de Arabidopsis/metabolismo , Arabidopsis/enzimología , Quinasas Quinasa Quinasa PAM/metabolismo , Fosfoproteínas Fosfatasas/metabolismo , Complejo de la Endopetidasa Proteasomal/metabolismo , Transducción de Señal/efectos de los fármacos , Ubiquitinas/metabolismo , Arabidopsis/efectos de los fármacos , Arabidopsis/genética , Núcleo Celular/efectos de los fármacos , Núcleo Celular/metabolismo , Activación Enzimática/efectos de los fármacos , Germinación/efectos de los fármacos , Modelos Biológicos , Mutación/genética , Fenotipo , Raíces de Plantas/efectos de los fármacos , Raíces de Plantas/crecimiento & desarrollo , Estomas de Plantas/efectos de los fármacos , Estomas de Plantas/crecimiento & desarrollo , Plantas Modificadas Genéticamente , Regiones Promotoras Genéticas/genética , Unión Proteica/efectos de los fármacos , Proteína Fosfatasa 2C , Transporte de Proteínas/efectos de los fármacos , Protoplastos/efectos de los fármacos , Protoplastos/metabolismo , Fracciones Subcelulares/metabolismo , Nicotiana
4.
BMC Plant Biol ; 15: 75, 2015 Mar 05.
Artículo en Inglés | MEDLINE | ID: mdl-25849764

RESUMEN

BACKGROUND: Histone acetyltransferase complex NuA4 and histone variant exchanging complex SWR1 are two chromatin modifying complexes which act cooperatively in yeast and share some intriguing structural similarities. Protein subunits of NuA4 and SWR1-C are highly conserved across eukaryotes, but form different multiprotein arrangements. For example, the human TIP60-p400 complex consists of homologues of both yeast NuA4 and SWR1-C subunits, combining subunits necessary for histone acetylation and histone variant exchange. It is currently not known what protein complexes are formed by the plant homologues of NuA4 and SWR1-C subunits. RESULTS: We report on the identification and molecular characterization of AtEAF1, a new subunit of Arabidopsis NuA4 complex which shows many similarities to the platform protein of the yeast NuA4 complex. AtEAF1 copurifies with Arabidopsis homologues of NuA4 and SWR1-C subunits ARP4 and SWC4 and interacts physically with AtYAF9A and AtYAF9B, homologues of the YAF9 subunit. Plants carrying a T-DNA insertion in one of the genes encoding AtEAF1 showed decreased FLC expression and early flowering, similarly to Atyaf9 mutants. Chromatin immunoprecipitation analyses of the single mutant Ateaf1b-2 and artificial miRNA knock-down Ateaf1 lines showed decreased levels of H4K5 acetylation in the promoter regions of major flowering regulator genes, further supporting the role of AtEAF1 as a subunit of the plant NuA4 complex. CONCLUSIONS: Growing evidence suggests that the molecular functions of the NuA4 and SWR1 complexes are conserved in plants and contribute significantly to plant development and physiology. Our work provides evidence for the existence of a yeast-like EAF1 platform protein in A. thaliana, filling an important gap in the knowledge about the subunit organization of the plant NuA4 complex.


Asunto(s)
Acetiltransferasas/metabolismo , Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Complejos Multiproteicos/metabolismo , Acetilación/efectos de los fármacos , Secuencia de Aminoácidos , Arabidopsis/efectos de los fármacos , Arabidopsis/enzimología , Arabidopsis/genética , Proteínas de Arabidopsis/química , Proteínas de Arabidopsis/genética , Núcleo Celular/efectos de los fármacos , Núcleo Celular/metabolismo , Flores/efectos de los fármacos , Flores/fisiología , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Genes de Plantas , Histonas/metabolismo , Ácidos Hidroxámicos/farmacología , MicroARNs/genética , MicroARNs/metabolismo , Datos de Secuencia Molecular , Mutación/genética , Unión Proteica/efectos de los fármacos , Estructura Terciaria de Proteína , ARN Mensajero/genética , ARN Mensajero/metabolismo , Saccharomyces cerevisiae/metabolismo , Transcripción Genética/efectos de los fármacos
5.
Dev Sci ; 17(3): 366-75, 2014 May.
Artículo en Inglés | MEDLINE | ID: mdl-24410725

RESUMEN

We studied whether the origins of math anxiety can be related to a biologically supported framework of stress induction: (un)controllability perception, here indicated by self-reported independent efforts in mathematics. Math anxiety was tested in 182 children (8- to 11-year-olds). Latent factor modeling was used to test hypotheses on plausible causal processes and mediations within competing models in quasi-experimental contrasts. Uncontrollability perception in mathematics, or (in)dependence of efforts, best fit the data as an antecedent of math anxiety. In addition, the relationship of math anxiety with gender was fully mediated by adaptive perception of control (i.e. controllability). That is, young boys differ from girls in terms of their experience of control in mathematics learning. These differences influence math anxiety. Our findings are consistent with recent suggestions in clinical literature according to which uncontrollability makes women more susceptible to fear and anxiety disorders.


Asunto(s)
Control Interno-Externo , Matemática/educación , Modelos Psicológicos , Ansiedad de Desempeño/fisiopatología , Teorema de Bayes , Niño , Femenino , Humanos , Funciones de Verosimilitud , Masculino , Análisis de Regresión , Factores Sexuales
6.
Artículo en Inglés | MEDLINE | ID: mdl-38837650

RESUMEN

To characterize the potential for exposure of amphibian terrestrial life stages to plant protection products (PPP), we studied the occurrence and habitat use of adult and metamorph common frogs (Rana temporaria) and common toads (Bufo bufo) in an agricultural landscape in Germany. The four selected study sites were breeding ponds with approximately 80% agricultural land within a 1-km radius. Adults were monitored by radio tracking for two years, and metamorph numbers were assessed for one summer using pitfall traps alongside drift fences. The results demonstrate that adults were rarely present in arable fields at any of the sites (overall 0.5% and 4% of total observations for frogs and toads, respectively). Metamorph captures in arable fields were more variable, ranging from 1.2% to 38.8% (frogs) and from 0.0% to 26.1% (toads) across study sites. Unsurprisingly, most captures in arable fields for both toad and frog metamorphs occurred at the site where the pond was completely surrounded by arable fields. Overall, the presence of adult amphibians in arable fields was limited and, for the metamorphs, occurred primarily when crops were denser and PPP spray interception higher. Diurnal hiding behavior was observed with the highest activity recorded at night, further reducing the risk of dermal exposure from direct PPP overspraying. In addition, it appeared that alternative habitats, such as woody structures or water bodies in the broader surrounding area, were preferred by the animals over the arable areas. The use of buffer zones around water bodies in agricultural areas would be an effective risk mitigation measure to protect terrestrial adults and metamorphs residing there and would reduce spray drift entry into water bodies during PPP application. It is hoped that these results will contribute to the discussion of risk assessment and mitigation options for amphibians. Integr Environ Assess Manag 2024;00:1-13. © 2024 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).

8.
ACS Sustain Chem Eng ; 10(11): 3749-3756, 2022 Mar 21.
Artículo en Inglés | MEDLINE | ID: mdl-35360052

RESUMEN

Upgradation of olefin-enriched Fischer-Tropsch cuts by the synthesis of alcohols leads to drop-in-capable biosynthetic fuels with low carbon emissions. As an alternative to the conventional two-step production of long-chain alcohols, tandem catalytic systems improve the energy and resource efficiency. Herein, we present an auto-tandem catalytic system for the production of alcohols from olefin-paraffin mixtures. By utilization of a tertiary alkanolamine as the ligand as well as the switchable component in the solvent system, a lean reaction system capable of catalyst recycling was developed. The system was characterized with regard to the switchable solvent separation approach and reaction parameters, resulting in alcohol yields of up to 99.5% and turnover frequencies of up to 764 h-1. By recycling the catalyst in 10 consecutive reactions, a total turnover number of 2810 was achieved.

9.
Nat Commun ; 13(1): 277, 2022 01 12.
Artículo en Inglés | MEDLINE | ID: mdl-35022409

RESUMEN

Nucleosomal acetyltransferase of H4 (NuA4) is an essential transcriptional coactivator in eukaryotes, but remains poorly characterized in plants. Here, we describe Arabidopsis homologs of the NuA4 scaffold proteins Enhancer of Polycomb-Like 1 (AtEPL1) and Esa1-Associated Factor 1 (AtEAF1). Loss of AtEAF1 results in inhibition of growth and chloroplast development. These effects are stronger in the Atepl1 mutant and are further enhanced by loss of Golden2-Like (GLK) transcription factors, suggesting that NuA4 activates nuclear plastid genes alongside GLK. We demonstrate that AtEPL1 is necessary for nucleosomal acetylation of histones H4 and H2A.Z by NuA4 in vitro. These chromatin marks are diminished genome-wide in Atepl1, while another active chromatin mark, H3K9 acetylation (H3K9ac), is locally enhanced. Expression of many chloroplast-related genes depends on NuA4, as they are downregulated with loss of H4ac and H2A.Zac. Finally, we demonstrate that NuA4 promotes H2A.Z deposition and by doing so prevents spurious activation of stress response genes.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Arabidopsis/fisiología , Procesos Autotróficos/fisiología , Histonas/metabolismo , Proteínas de Complejo Poro Nuclear/metabolismo , Acetiltransferasas , Arabidopsis/genética , Proteínas de Arabidopsis/genética , Procesos Autotróficos/genética , Núcleo Celular/metabolismo , Cloroplastos , Cromatina/metabolismo , Efrina-A1 , Regulación de la Expresión Génica de las Plantas , Histonas/genética , Proteínas de Complejo Poro Nuclear/genética , Nucleosomas/metabolismo , Estrés Fisiológico , Factores de Transcripción/metabolismo
10.
Nucleic Acids Res ; 37(10): 3189-201, 2009 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-19305000

RESUMEN

Large differences in plant genome sizes are mainly due to numerous events of insertions or deletions (indels). The balance between these events determines the evolutionary direction of genome changes. To address the question of what phenomena trigger these alterations, we compared the genomic sequences of two Arabidopsis thaliana lines, Columbia (Col) and Landsberg erecta (Ler). Based on the resulting alignments large indels (>100 bp) within these two genomes were analysed. There are approximately 8500 large indels accounting for the differences between the two genomes. The genetic basis of their origin was distinguished as three main categories: unequal recombination (Urec)-derived, illegitimate recombination (Illrec)-derived and transposable elements (TE)-derived. A detailed study of their distribution and size variation along chromosomes, together with a correlation analyses, allowed us to demonstrate the impact of particular recombination-based mechanisms on the plant genome evolution. The results show that unequal recombination is not efficient in the removal of TEs within the pericentromeric regions. Moreover, we discovered an unexpectedly high influence of large indels on gene evolution pointing out significant differences between the various gene families. For the first time, we present convincing evidence that somatic events do play an important role in plant genome evolution.


Asunto(s)
Arabidopsis/genética , Cromosomas de las Plantas , Genoma de Planta , Mutación INDEL , Mapeo Contig , Elementos Transponibles de ADN , Genes de Plantas , Genómica , Retroelementos
11.
J Exp Bot ; 61(12): 3475-91, 2010 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-20581125

RESUMEN

In higher plants, copper ions, hydrogen peroxide, and cycloheximide have been recognized as very effective inducers of the transcriptional activity of genes encoding the enzymes of the ethylene biosynthesis pathway. In this report, the transcriptional patterns of genes encoding the 1-aminocyclopropane-1-carboxylate synthases (ACSs), 1-aminocyclopropane-1-carboxylate oxidases (ACOs), ETR1, ETR2, and ERS1 ethylene receptors, phospholipase D (PLD)-alpha1, -alpha2, -gamma1, and -delta, and respiratory burst oxidase homologue (Rboh)-NADPH oxidase-D and -F in response to these inducers in Brassica oleracea etiolated seedlings are shown. ACS1, ACO1, ETR2, PLD-gamma1, and RbohD represent genes whose expression was considerably affected by all of the inducers used. The investigations were performed on the seedlings with (i) ethylene insensitivity and (ii) a reduced level of the PLD-derived phosphatidic acid (PA). The general conclusion is that the expression of ACS1, -3, -4, -5, -7, and -11, ACO1, ETR1, ERS1, and ETR2, PLD-gamma 1, and RbohD and F genes is undoubtedly under the reciprocal cross-talk of the ethylene and PA(PLD) signalling routes; both signals affect it in concerted or opposite ways depending on the gene or the type of stimuli. The results of these studies on broccoli seedlings are in agreement with the hypothesis that PA may directly affect the ethylene signal transduction pathway via an inhibitory effect on CTR1 (constitutive triple response 1) activity.


Asunto(s)
Brassica/metabolismo , Etilenos/biosíntesis , NADPH Oxidasas/metabolismo , Fosfolipasa D/metabolismo , Proteínas de Plantas/metabolismo , Receptores de Superficie Celular/metabolismo , Aminoácido Oxidorreductasas/genética , Aminoácido Oxidorreductasas/metabolismo , Brassica/genética , Cobre/farmacología , Cicloheximida/farmacología , Regulación de la Expresión Génica de las Plantas , Genes de Plantas , Peróxido de Hidrógeno/farmacología , Liasas/genética , Liasas/metabolismo , NADPH Oxidasas/genética , Fosfolipasa D/genética , Proteínas de Plantas/genética , ARN de Planta/genética , Receptores de Superficie Celular/genética , Plantones/genética , Plantones/metabolismo , Transducción de Señal
12.
J Atten Disord ; 24(12): 1701-1710, 2020 10.
Artículo en Inglés | MEDLINE | ID: mdl-27585832

RESUMEN

Objective: Past research has provided some preliminary evidence that ADHD and reactive aggression have overlapping neurocognitive bases. Based on this, we tested the hypothesis that ADHD symptoms are closely coupled in developmental terms with reactive aggression, more so than with proactive aggression with which it has been postulated to be only indirectly linked. Method: We used latent growth curve analysis to estimate the developmental relations between ADHD symptoms and subtypes of aggressive behavior in a normative sample of 1,571 youth (761 female, 810 male) measured from ages 7 to 15. Results: Individual ADHD trajectories were significantly and substantially correlated with individual trajectories in both aggressive subtypes; however, consistent with our hypothesis, the relation with reactive aggression was significantly stronger. Conclusion: Our study provides some of the first evidence for a differential relation between ADHD symptoms and aggression subtypes not only cross-sectionally but also in terms of their longitudinal developmental trajectories.


Asunto(s)
Conducta del Adolescente , Trastorno por Déficit de Atención con Hiperactividad , Adolescente , Agresión , Trastorno por Déficit de Atención con Hiperactividad/epidemiología , Niño , Femenino , Humanos , Masculino
13.
Environ Toxicol Chem ; 39(2): 359-370, 2020 02.
Artículo en Inglés | MEDLINE | ID: mdl-31634978

RESUMEN

Pesticides used in seed coatings can influence seed consumption by birds and, therefore, actual exposure risk for them. A quantification of such effects on consumption is currently not regarded as a refinement factor in environmental risk assessments, although it is a possible option and should be considered, for example, for comparing exposure risk of different pesticides. It can highlight avoidance behavior, preventing birds from taking up lethal or sublethal pesticide doses. To formulate a standard, we developed an indoor test procedure based on established pen test methods, including 2- and no-choice phases with hunger periods. During testing, the highest standards of animal welfare were applied. Statistical approaches were used to determine the most appropriate number of replicates and for analysis. The effect on consumption of seeds is expressed as the ratio of consumed treated to untreated seeds. This consumption factor can be applied in avian risk assessments for seed treatments equivalent to an avoidance factor. We present, as an example, an application of the procedure to obtain a seed- and species-specific consumption factor for oilseed rape seeds (Brassica napus) provided untreated and treated with fungicides to greenfinches (Carduelis chloris) and Japanese quail (Coturnix japonica). Overall, bird constitution was not negatively affected by the test procedure in either species. The test procedure was suitable for showing differences in expected consumption patterns, such as greater avoidance of treated seeds in 2-choice than in no-choice tests. However, the consumption differed between species and fungicide treatments, allowing us to rank avoidance effects of different fungicides. Using the presented standard procedure to generate comparable pesticide- and species-specific consumption factors for more species and seed treatments may result in refinement of default values and reduce animal trials in different designs in the future. Environ Toxicol Chem 2020;39:359-370. © 2019 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals, Inc. on behalf of SETAC.


Asunto(s)
Alimentación Animal/normas , Coturnix/fisiología , Conducta Alimentaria/efectos de los fármacos , Pinzones/fisiología , Plaguicidas/análisis , Semillas/química , Animales , Reacción de Prevención , Brassica napus/química , Plaguicidas/toxicidad , Medición de Riesgo , Especificidad de la Especie
14.
Planta ; 230(5): 1003-17, 2009 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-19705149

RESUMEN

We report on the characterization of the interaction between reactive oxygen species signalling and abscisic acid (ABA)-mediated gene network in ozone (O(3)) stress response. To identify the stress-related signalling pathways and possible cross-talk controlled by an ABA-negative regulator, the protein phosphatase 2C abscisic acid insensitive1 (ABI1), we performed a genome-wide transcription profiling of O(3)-treated wild-type and ABI1 knockout (abi1td) plants. In addition, to better understand ABA signalling and the interactions between stress response pathways, we performed a microarray analysis of drought-treated plants. Functional categorization of the identified genes showed that ABI1 is involved in the modulation of several cellular processes including metabolism, transport, development, information pathways and variant splicing. Comparisons with available transcriptome data sets revealed the extent of ABI1 involvement in both ABA-dependent and ABA-independent gene expression. Furthermore, in O(3) stress the ABA hypersensitivity of abi1td resulted in a significant reduction of the ABA level, ethylene (ET) over-production and O(3) tolerance. Moreover, the physical interaction of ABI1 with ACC synthase2 and ACC synthase6 was shown. We provide a model explaining how ABI1 can regulate both ABA and ET biosynthesis. Altogether, our findings indicate that ABI1 plays the role of a general signal transducer linking ABA and ET biosynthesis as well as signalling pathways to O(3) stress tolerance.


Asunto(s)
Ácido Abscísico/biosíntesis , Proteínas de Arabidopsis/genética , Arabidopsis/genética , Etilenos/biosíntesis , Perfilación de la Expresión Génica , Mutagénesis Insercional/efectos de los fármacos , Ozono/farmacología , Fosfoproteínas Fosfatasas/genética , Empalme Alternativo/efectos de los fármacos , Empalme Alternativo/genética , Arabidopsis/efectos de los fármacos , Proteínas de Arabidopsis/metabolismo , Transporte Biológico/efectos de los fármacos , Ciclopentanos/farmacología , Sequías , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Mutación/genética , Oxilipinas/farmacología , Fenotipo , Fosfoproteínas Fosfatasas/metabolismo , Proteína Fosfatasa 2C , Regulón/genética , Reproducibilidad de los Resultados , Transducción de Señal/efectos de los fármacos , Transducción de Señal/genética , Estrés Fisiológico/efectos de los fármacos , Transcripción Genética/efectos de los fármacos
15.
Genome ; 52(7): 620-33, 2009 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-19767893

RESUMEN

We further investigated genome macrosynteny for Brassica species and Arabidopsis thaliana. This work aimed at comparative map construction for B. oleracea and A. thaliana chromosomes based on 160 known A. thaliana probes: 147 expressed sequence tags (ESTs) and 13 full-length cDNA clones. Based on an in silico study of the A. thaliana genome, most of the selected ESTs (83%) represented unique or low-copy genes. We identified conserved segments by the visual inspection of comparative data with a priori assumptions, and established their significance with the LineUp algorithm. Evaluation of the number of B. oleracea gene copies per A. thaliana EST revealed a fixed upward trend. We established a segregation distortion pattern for all genetic loci, with particular consideration of the type of selection (gametic or zygotic), and discuss its possible impact on genetic map construction. Consistent with previous reports, we found evidence for numerous chromosome rearrangements and the genome fragment replication of B. oleracea that have taken place since the divergence of the two species. Also, we found that over 54% of the B. oleracea genome is covered by 24 segments conserved with the A. thaliana genome. The average conserved segment is composed of 5 loci covering 19.3 cM in the B. oleracea genetic map and 2.42 Mb in the A. thaliana physical map. We have also attempted to use a unified system of conserved blocks (previously described) to verify our results and perform a comprehensive comparison with other Brassica species.


Asunto(s)
Arabidopsis/genética , Brassica/genética , Cromosomas de las Plantas/genética , Genoma de Planta , Mapeo Cromosómico , Etiquetas de Secuencia Expresada , Dosificación de Gen , Duplicación de Gen , Genes de Plantas
16.
J Integr Plant Biol ; 50(10): 1256-67, 2008 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-19017113

RESUMEN

For many plant species ozone stress has become much more severe in the last decade. The accumulating evidence for the significant effects of ozone pollutant on crop and forest yield situate ozone as one of the most important environmental stress factors that limits plant productivity worldwide. Today, transcriptomic approaches seem to give the best coverage of genome level responses. Therefore, microarray serves as an invaluable tool for global gene expression analyses, unravelling new information about gene pathways, in-species and cross-species gene expression comparison, and for the characterization of unknown relationships between genes. In this review we summarize the recent progress in the transcriptomics of ozone to demonstrate the benefits that can be harvested from the application of integrative and systematic analytical approaches to study ozone stress response. We focused our consideration on microarray analyses identifying gene networks responsible for response and tolerance to elevated ozone concentration. From these analyses it is now possible to notice how plant ozone defense responses depend on the interplay between many complex signaling pathways and metabolite signals.


Asunto(s)
Regulación de la Expresión Génica de las Plantas/genética , Ozono/farmacología , Plantas/efectos de los fármacos , Plantas/genética , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Análisis de Secuencia por Matrices de Oligonucleótidos
17.
Psychiatry Res ; 269: 585-592, 2018 11.
Artículo en Inglés | MEDLINE | ID: mdl-30205351

RESUMEN

Both anxiety and aggression commonly co-occur with ADHD symptoms. Two competing hypotheses describing the role of anxiety in aggression associated with ADHD symptoms have previously been advanced. The exacerbation hypothesis proposes that the presence of anxiety increases the risk of aggression in the context of ADHD symptoms. The attenuation hypothesis proposes that the presence of anxiety protects against aggression in the context of ADHD symptoms. We tested these hypotheses using moderated cross-lagged panel models in the Zurich project on social development from childhood to adulthood (z-proso) sample using both self-report (3 waves) and informant-report (8 waves) data spanning ages 7-17. We found evidence that anxiety protects against both reactive and proactive aggression; however, the effect was direct: there was no evidence for anxiety moderating the strength of ADHD symptom-aggression links. Results suggest that anxiety likely plays an important role in inhibiting aggression but does not interact with ADHD symptoms in the manner predicted by either the exacerbation or attenuation hypothesis.


Asunto(s)
Agresión/psicología , Ansiedad/diagnóstico , Ansiedad/psicología , Trastorno por Déficit de Atención con Hiperactividad/diagnóstico , Trastorno por Déficit de Atención con Hiperactividad/psicología , Progresión de la Enfermedad , Adolescente , Agresión/fisiología , Ansiedad/epidemiología , Trastorno por Déficit de Atención con Hiperactividad/epidemiología , Niño , Estudios de Cohortes , Estudios Transversales , Femenino , Humanos , Estudios Longitudinales , Masculino , Autoinforme , Factores de Tiempo , Adulto Joven
18.
J Am Geriatr Soc ; 66(7): 1332-1338, 2018 07.
Artículo en Inglés | MEDLINE | ID: mdl-29676433

RESUMEN

OBJECTIVES: To estimate associations between long-term use of proton pump inhibitors (PPIs) and pneumonia incidence in older adults in primary care. DESIGN: Longitudinal analyses of electronic medical records. SETTING: England PARTICIPANTS: Individuals aged 60 and older in primary care receiving PPIs for 1 year or longer (N=75,050) and age- and sex-matched controls (N=75,050). MEASUREMENTS: Net hazard ratios for pneumonia incidence in Year 2 of treatment were estimated using the prior event rate ratio (PERR), which adjusts for pneumonia incidence differences before initiation of treatment. Inverse probability weighted models adjusted for 78 demographic, disease, medication, and healthcare usage measures. RESULTS: During the second year after initiating treatment, PPIs were associated with greater hazard of incident pneumonia (PERR-adjusted hazard ratio=1.82, 95% confidence interval=1.27-2.54), accounting for pretreatment pneumonia rates. Estimates were similar across age and comorbidity subgroups. Similar results were also obtained from propensity score- and inverse probability-weighted models. CONCLUSION: In a large cohort of older adults in primary care, PPI prescription was associated with greater risk of pneumonia in the second year of treatment. Results were robust across alternative analysis approaches. Controversies about the validity of reported short-term harms of PPIs should not divert attention from potential long-term effects of PPI prescriptions on older adults.


Asunto(s)
Antiulcerosos/efectos adversos , Infecciones Comunitarias Adquiridas/inducido químicamente , Neumonía/inducido químicamente , Inhibidores de la Bomba de Protones/efectos adversos , Factores de Edad , Anciano , Anciano de 80 o más Años , Antiulcerosos/administración & dosificación , Estudios de Cohortes , Infecciones Comunitarias Adquiridas/epidemiología , Inglaterra/epidemiología , Femenino , Humanos , Incidencia , Masculino , Persona de Mediana Edad , Neumonía/epidemiología , Inhibidores de la Bomba de Protones/administración & dosificación , Factores de Riesgo
19.
J Appl Genet ; 58(1): 11-22, 2017 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-27447459

RESUMEN

In plant cells, calcium-dependent protein kinases (CDPKs) are important sensors of Ca2+ flux resulting from various environmental stresses like cold, drought or salt stress. Previous genome sequence analysis and comparative studies in Arabidopsis (Arabidopsis thaliana L.) and rice (Oryza sativa L.) defined a multi-gene family of CDPKs. Here, we identified and characterised the CDPK gene complement of the model plant, barley (Hordeum vulgare L.). Comparative analysis encompassed phylogeny reconstruction based on newly available barley genome sequence, as well as established model genomes (e.g. O. sativa, A. thaliana, Brachypodium distachyon). Functional gene copies possessed characteristic CDPK domain architecture, including a serine/threonine kinase domain and four regulatory EF-hand motifs. In silico verification was followed by measurements of transcript abundance via real-time polymerase chain reaction (PCR). The relative expression of CDPK genes was determined in the vegetative growth stage under intensifying drought stress conditions. The majority of barley CDPK genes showed distinct changes in patterns of expression during exposure to stress. Our study constitutes evidence for involvement of the barley CDPK gene complement in signal transduction pathways relating to adaptation to drought. Our bioinformatics and transcriptomic analyses will provide an important foundation for further functional dissection of the barley CDPK gene family.


Asunto(s)
Adaptación Fisiológica/genética , Sequías , Hordeum/genética , Proteínas de Plantas/genética , Proteínas Quinasas/genética , Mapeo Cromosómico , Perfilación de la Expresión Génica , Genes de Plantas , Familia de Multigenes , Filogenia , Reacción en Cadena en Tiempo Real de la Polimerasa , Transducción de Señal , Estrés Fisiológico
20.
J Gerontol A Biol Sci Med Sci ; 72(2): 243-250, 2017 02.
Artículo en Inglés | MEDLINE | ID: mdl-27146371

RESUMEN

BACKGROUND: There is limited evidence on statin risk and effectiveness for patients aged 80+. We estimated risk of recurrent myocardial infarction, muscle-related and other adverse events, and statin-related incremental costs in "real-world" older patients treated with statins versus no statins. METHODS: We used primary care electronic medical records from the UK Clinical Practice Research Datalink. Subhazard ratios (competing risk of death) for myocardial infarction recurrence (primary end point), falls, fractures, ischemic stroke, and dementia, and hazard ratios (Cox) for all-cause mortality were used to compare older (60+) statin users and 1:1 propensity-score-matched controls (n = 12,156). Participants were followed-up for 10 years. RESULTS: Mean age was 76.5±9.2 years; 45.5% were women. Statins were associated with near significant reduction in myocardial infarction recurrence (subhazard ratio = 0.84, 0.69-1.02, p = .073), with protective effect in the 60-79 age group (0.73, 0.57-0.94) but a nonsignificant result in the 80+ group (1.06, 0.78-1.44; age interaction p = .094). No significant associations were found for stroke or dementia. Data suggest an increased risk of falls (1.36, 1.17-1.60) and fractures (1.33, 1.04-1.69) in the first 2 years of treatment, particularly in the 80+ group. Treatment was associated with lower all-cause mortality. Statin use was associated with health care cost savings in the 60-79 group but higher costs in the 80+ group. CONCLUSIONS: Estimates of statin effectiveness for the prevention of recurrent myocardial infarction in patients aged 60-79 years were similar to trial results, but more evidence is needed in the older group. There may be an excess of falls and fractures in very old patients, which deserves further investigation.


Asunto(s)
Inhibidores de Hidroximetilglutaril-CoA Reductasas/uso terapéutico , Infarto del Miocardio/prevención & control , Anciano , Anciano de 80 o más Años , Estudios de Cohortes , Femenino , Humanos , Inhibidores de Hidroximetilglutaril-CoA Reductasas/efectos adversos , Masculino , Persona de Mediana Edad , Ensayos Clínicos Controlados no Aleatorios como Asunto , Estudios Retrospectivos , Prevención Secundaria , Resultado del Tratamiento
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