Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 29
Filtrar
1.
Antonie Van Leeuwenhoek ; 105(5): 915-24, 2014 May.
Artículo en Inglés | MEDLINE | ID: mdl-24599521

RESUMEN

A novel bacterial strain designated GJW-30(T) was isolated from soil of the lava forest, Gotjawal, located in Aewol, Jeju, Korea. Strain GJW-30(T) was found to be strictly aerobic, Gram-negative and to form pleomorphic, non-motile rods and white colonies on R2A agar. The major fatty acids were identified as C18:1ω7c, C16:0 and C17:0, the predominant isoprenoid quinone as Q-10, the polar lipids as diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, an unidentified aminolipid and an unidentified lipid. The cell-wall sugar pattern of strain GJW-30(T) was found to be composed of glucose, ribose and rhamnose and meso-DAP as the diagnostic diamino acid in the cell-wall peptidoglycan. The DNA G+C content of strain GJW-30(T) is 62.2 mol%. Phylogenetic analysis, based on 16S rRNA gene sequence similarities, showed that strain GJW-30(T) forms a deep branch within the order Rhizobiales, sharing the highest level of sequence homology with Bradyrhizobium oligotrophicum LMG 10732(T) (93.6 %). On the basis of the phenotypic, chemotaxonomic and phylogenetic characteristics, strain GJW-30(T) is considered to represent a novel genus and species, for which the name Variibacter gotjawalensis gen. nov., sp. nov. (the type strain is GJW-30(T) = KCTC 32391(T) = CECT 8514(T) = LMG 28093(T)) is proposed.


Asunto(s)
Bacilos y Cocos Aerobios Gramnegativos/clasificación , Bacilos y Cocos Aerobios Gramnegativos/aislamiento & purificación , Microbiología del Suelo , Técnicas de Tipificación Bacteriana , Composición de Base , Carbohidratos/análisis , Pared Celular/química , Análisis por Conglomerados , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Ácido Diaminopimélico/análisis , Ácidos Grasos/análisis , Bosques , Bacilos y Cocos Aerobios Gramnegativos/genética , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Corea (Geográfico) , Datos de Secuencia Molecular , Fosfolípidos/análisis , Filogenia , Quinonas/análisis , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
2.
J Microbiol Methods ; 72(2): 157-65, 2008 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-18155789

RESUMEN

In the present study six assays for the quantification of biofilms formed in 96-well microtiter plates were optimised and evaluated: the crystal violet (CV) assay, the Syto9 assay, the fluorescein diacetate (FDA) assay, the resazurin assay, the XTT assay and the dimethyl methylene blue (DMMB) assay. Pseudomonas aeruginosa, Burkholderia cenocepacia, Staphylococcus aureus, Propionibacterium acnes and Candida albicans were used as test organisms. In general, these assays showed a broad applicability and a high repeatability for most isolates. In addition, the estimated numbers of CFUs present in the biofilms show limited variations between the different assays. Nevertheless, our data show that some assays are less suitable for the quantification of biofilms of particular isolates (e.g. the CV assay for P. aeruginosa).


Asunto(s)
Biopelículas/crecimiento & desarrollo , Candida albicans/fisiología , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Bacterias Grampositivas/fisiología , Coloración y Etiquetado , Recuento de Colonia Microbiana , Fluoresceínas/metabolismo , Violeta de Genciana/metabolismo , Azul de Metileno/análogos & derivados , Compuestos Orgánicos/metabolismo , Oxazinas/metabolismo , Sales de Tetrazolio/metabolismo , Xantenos/metabolismo
3.
Water Environ Res ; 80(8): 703-7, 2008 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-18751534

RESUMEN

Microbial fouling of a municipal water treatment system using reverse osmosis was investigated. From a combination of growth and molecular assays, it was discovered that the prefilter unit concentrated and facilitated microbial growth, and such growth led to microbial fouling of the reverse osmosis unit. Few cells were observed in the prefilter influent, but substantial microbial contamination was observed in the prefilter effluent, and this correlated with increasing headloss across the prefilter. The effluent caused microbial fouling of the leading elements of the reverse osmosis unit, as determined by reduced permeate flow, analysis of the elements, and assays of the membrane foulant. Both the introduction of microorganisms to the reverse osmosis unit from the prefilter unit and headloss across the prefilter could be effectively controlled through cleansing of the prefilter housing unit with sulfuric acid. Such treatments must be performed at appropriate intervals to prevent subsequent microbial growth in the prefilter unit.


Asunto(s)
Biopelículas , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Microbiología del Agua , Purificación del Agua , Recuento de Colonia Microbiana , Contaminación de Equipos , Ultrafiltración , Abastecimiento de Agua
4.
Oral Health Prev Dent ; 6(4): 337-41, 2008.
Artículo en Inglés | MEDLINE | ID: mdl-19178100

RESUMEN

PURPOSE: The aim of the present study was to examine whether xylitol, at different concentrations, inhibits the formation of an experimental model of oral biofilm. MATERIALS AND METHODS: Biofilms of six bacterial species (Streptococcus mutans, Streptococcus sobrinus, Lactobacillus rhamnosus, Actinomyces viscosus, Porphyromonas gingivalis and Fusobacterium nucleatum) were prepared on hydroxyapatite (HA) discs according to the Zürich Biofilm Model. Xylitol was tested at two concentrations, 1% and 3%. At the end of their designated incubation times, some HA discs were destined for confocal laser scanning microscopy (CLSM) and the others were harvested using a sterile surgical instrument. Aliquots of harvested biofilms were diluted and plated onto specific media. After a 48-h anaerobic incubation at 37 degrees C, the colony-forming units (CFUs) were counted. RESULTS: CLSM images showed that only a small amount of isolated bacteria was observed on the surface of HA discs. Culture of harvested biofilms showed an inhibition in the growth of different species included in the biofilms. CONCLUSIONS: Xylitol has a clear inhibitory effect on the formation of the experimental biofilms. This study shows that xylitol is not only efficient in inhibiting the acid production of cariogenic bacteria, but also in preventing the formation of a multispecies biofilm; it confirms the relevance of the use of this polyol for the prevention of oral diseases caused by dental plaque.


Asunto(s)
Antiinfecciosos/farmacología , Biopelículas/efectos de los fármacos , Depósitos Dentarios/microbiología , Bacilos y Cocos Aerobios Gramnegativos/efectos de los fármacos , Bacterias Grampositivas/efectos de los fármacos , Xilitol/farmacología , Actinomyces viscosus/efectos de los fármacos , Actinomyces viscosus/fisiología , Recuento de Colonia Microbiana , Relación Dosis-Respuesta a Droga , Durapatita , Fusobacterium nucleatum/efectos de los fármacos , Fusobacterium nucleatum/fisiología , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Bacterias Grampositivas/fisiología , Lacticaseibacillus rhamnosus/efectos de los fármacos , Lacticaseibacillus rhamnosus/fisiología , Porphyromonas gingivalis/efectos de los fármacos , Porphyromonas gingivalis/fisiología , Streptococcus mutans/efectos de los fármacos , Streptococcus mutans/fisiología , Streptococcus sobrinus/efectos de los fármacos , Streptococcus sobrinus/fisiología , Diente Artificial/microbiología
6.
Acta Biochim Pol ; 62(4): 733-7, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26619252

RESUMEN

Biofilms are highly organized microbial communities displaying high resistance to disinfectants and other external environmental factors. Medical equipment, such as stents and catheters, can be colonized by a variety of bacteria including opportunistic pathogens circulating in the environment and dangerous to immunocompromised patients. Application of materials resistant to biofilm formation will minimize the risk of patients' infection. Hence, the aim of this research was to determine the biofilm growth of environmental bacteria isolates on polyvinyl chloride and styrene-acronitrile copolymer surfaces. Nine strains (Pseudomonas aeruginosa, Burkholderia cepacia and Serratia liquefacies) isolated from cosmetics, and a reference P. aeruginosa strain ATCC 15442, were tested. The ability and dynamics of biofilm formation on intubation catheters (30°C, up to 24 h) in bacterial growth cultures (10(7)-10(8) CFU/ml) was investigated, with subsequent sonication and quantification by agar plate count method. The results indicated that all the tested bacteria expressed a strong ability for the polymer surface adhesion, reaching 4.6 to 6.7 log CFU/cm(2) after 30 minutes. Moreover, for the majority of strains, the level of 24-hour biofilm production was from 6.67-7.61 log CFU/cm(2). This research indicates that the environmental strains circulating between the cosmetics and patients may pose a threat of biofilm formation on medical equipment surfaces, and presumably in the clinical surroundings as well.


Asunto(s)
Biopelículas , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Nitrilos/química , Polímeros/química , Cloruro de Polivinilo , Adhesión Bacteriana , Propiedades de Superficie
7.
J Appl Microbiol ; 85 Suppl 1: 19S-28S, 1998 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-21182689

RESUMEN

Hydrodynamic conditions control two interlinked parameters; mass transfer and drag, and will, therefore, significantly influence many of the processes involved in biofilm development. The goal of this research was to determine the effect of flow velocity and nutrients on biofilm structure. Biofilms were grown in square glass capillary flow cells under laminar and turbulent flows. Biofilms were observed microscopically under flow conditions using image analysis. Mixed species bacterial biofilms were grown with glucose (40 mg/l) as the limiting nutrient. Biofilms grown under laminar conditions were patchy and consisted of roughly circular cell clusters separated by interstitial voids. Biofilms in the turbulent flow cell were also patchy but these biofilms consisted of patches of ripples and elongated 'streamers' which oscillated in the flow. To assess the influence of changing nutrient conditions on biofilm structure the glucose concentration was increased from 40 to 400 mg/l on an established 21 day old biofilm growing in turbulent flow. The cell clusters grew rapidly and the thickness of the biofilm increased from 30 µ to 130 µ within 17 h. The ripples disappeared after 10 hours. After 5 d the glucose concentration was reduced back to 40 mg/l. There was a loss of biomass and patches of ripples were re-established within a further 2 d.


Asunto(s)
Biopelículas , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Hidrodinámica , Fenómenos Fisiológicos de la Nutrición , Biopelículas/crecimiento & desarrollo , Biomasa , Recuento de Colonia Microbiana , Bacilos y Cocos Aerobios Gramnegativos/crecimiento & desarrollo , Factores de Tiempo
8.
Microbiol Res ; 155(2): 113-21, 2000 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-10950194

RESUMEN

The response of barley seedlings to inoculation with associative rhizobacteria Azospirillum lipoferum 137, Arthrobacter mysorens 7, Agrobacterium radiobacter 10 and Flavobacterium sp. L30 was studied in hydroponic and quartz sand cultures in the presence of 50 microM CdCl2. Cadmium caused severe inhibition in the growth and uptake of nutrient elements by the plants. Inoculation with the bacteria slightly stimulated root length and biomass of hydroponically grown Cd-treated seedlings. The bacteria increased the content of nutrients such as P, Mg, Ca, Fe, Mn and Na in roots and or shoots of the plants grown in the absence of Cd. Positive changes in the element composition caused by the bacteria were less pronounced in Cd-treated plants, whereas the total amount of nutrients taken by the inoculated plants was generally increased significantly. The content of Cd in the inoculated plants was unchanged, except increased in roots upon addition of A. lipoferum 137. Inoculation did not affect the activity of peroxidase, alpha-mannosidase, phosphodiesterae, alpha-galactosidase, and concentration of sulfhydryl compounds used as biochemical markers of stress in plant roots. The results showed that associative bacteria were capable of decreasing partially the toxicity of Cd for the barley plants through the improvement in uptake of nutrient elements.


Asunto(s)
Cloruro de Cadmio/toxicidad , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Bacterias Grampositivas/fisiología , Hordeum/microbiología , Arthrobacter/crecimiento & desarrollo , Arthrobacter/metabolismo , Arthrobacter/fisiología , Azospirillum/crecimiento & desarrollo , Azospirillum/metabolismo , Azospirillum/fisiología , Cationes/metabolismo , Flavobacterium/crecimiento & desarrollo , Flavobacterium/metabolismo , Flavobacterium/fisiología , Bacilos y Cocos Aerobios Gramnegativos/crecimiento & desarrollo , Bacilos y Cocos Aerobios Gramnegativos/metabolismo , Bacterias Grampositivas/crecimiento & desarrollo , Bacterias Grampositivas/metabolismo , Hordeum/crecimiento & desarrollo , Hordeum/metabolismo , Indoles/metabolismo , Fósforo/metabolismo , Rhizobium/crecimiento & desarrollo , Rhizobium/metabolismo , Rhizobium/fisiología
9.
J Assoc Physicians India ; 49: 324-6, 2001 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-11291970

RESUMEN

OBJECTIVE: Nonfermenters are a group of aerobic non sporing gram-negative bacilli found primarily free in nature and as commensals, whose pathogenic potentials are well established. The current study was conducted to assess the role of these nonfermenters in various infections and to characterize these isolates. METHODS: One hundred nonfermenters isolated from various clinical specimens were grouped according to Weaver-Hollis scheme based on growth on MacConkeys agar, oxidase activity and oxidation/fermentation of glucose. Species level identification was attempted based on a battery of biochemical tests. All isolates were then subjected to antimicrobial sensitivity. RESULTS: Majority of the isolates were encountered from pus and urine (50%). These isolates belonged to six of the seven Weaver-Hollis groups. Fifty six per cent of the isolates belonged to genus Pseudomonas. Multidrug resistance with resistance to more than three antimicrobials was frequently seen. Amikacin and ciprofloxacin were found to be most effective. CONCLUSION: Nonfermenting gram negative organisms are responsible for variety of infective conditions. Amongst them genus Pseudomonas and Acinetobacter calcoaceticus were more frequently encountered. Amikacin or ciprofloxacin (for nonfermenters other than Pseudomonas) appears to be the drug of choice for treatment of such infections.


Asunto(s)
Bacilos y Cocos Aerobios Gramnegativos/aislamiento & purificación , Infecciones por Bacterias Gramnegativas/microbiología , Infecciones por Acinetobacter/microbiología , Acinetobacter calcoaceticus/aislamiento & purificación , Bacilos y Cocos Aerobios Gramnegativos/patogenicidad , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Humanos , Pruebas de Sensibilidad Microbiana , Pseudomonas/aislamiento & purificación , Infecciones por Pseudomonas/microbiología
10.
Tijdschr Diergeneeskd ; 125(4): 113-6, 2000 Feb 15.
Artículo en Neerlandesa | MEDLINE | ID: mdl-10705607

RESUMEN

O. rhinotracheale is a relatively new bacterium. It is found in commercial fowl and wild birds throughout the world. O. rhinotracheale causes respiratory disease, presenting as pneumonia and air sacculitis. It is transmitted horizontally as well as vertically. O. rhinotracheale is difficult to isolate. Serologically, twelve serotypes can be distinguished, of which serotype A is the most prevalent. Treatment can be difficult, because acquired resistance against the regular antibiotics is common in O. rhinotracheale isolates. An inactivated vaccine for broiler breeders has been developed and for turkeys an inactivated autovaccine can be made.


Asunto(s)
Pollos , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Infecciones por Bacterias Gramnegativas/veterinaria , Enfermedades de las Aves de Corral/microbiología , Infecciones del Sistema Respiratorio/veterinaria , Pavos , Animales , Bacilos y Cocos Aerobios Gramnegativos/efectos de los fármacos , Bacilos y Cocos Aerobios Gramnegativos/inmunología , Infecciones por Bacterias Gramnegativas/microbiología , Infecciones por Bacterias Gramnegativas/patología , Enfermedades de las Aves de Corral/patología , Infecciones del Sistema Respiratorio/microbiología , Infecciones del Sistema Respiratorio/patología
11.
Appl Environ Microbiol ; 73(8): 2708-17, 2007 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-17293520

RESUMEN

Bacteria in the phylum Acidobacteria are widely distributed and abundant in soils, but their ecological roles are poorly understood, owing in part to a paucity of cultured representatives. In a molecular survey of acidobacterial diversity at the Michigan State University Kellogg Biological Station Long-Term Ecological Research site, 27% of acidobacterial 16S rRNA gene clones in a never-tilled, successional plant community belonged to subdivision 1, whose relative abundance varied inversely with soil pH. Strains of subdivision 1 were isolated from these never-tilled soils using low-nutrient medium incubated for 3 to 4 weeks under elevated levels of carbon dioxide, which resulted in a slightly acidified medium that matched the pH optima of the strains (between 5 and 6). Colonies were approximately 1 mm in diameter and either white or pink, the latter due to a carotenoid(s) that was synthesized preferentially under 20% instead of 2% oxygen. Strains were gram-negative, aerobic, chemo-organotrophic, nonmotile rods that produced an extracellular matrix. All strains contained either one or two copies of the 16S rRNA encoding gene, which along with a relatively slow doubling time (10 to 15 h at ca. 23 degrees C) is suggestive of an oligotrophic lifestyle. Six of the strains are sufficiently similar to one another, but distinct from previously named Acidobacteria, to warrant creation of a new genus, Terriglobus, with Terriglobus roseus defined as the type species. The physiological and nutritional characteristics of Terriglobus are consistent with its potential widespread distribution in soil.


Asunto(s)
Bacilos y Cocos Aerobios Gramnegativos/clasificación , Bacilos y Cocos Aerobios Gramnegativos/aislamiento & purificación , Microbiología del Suelo , Técnicas de Tipificación Bacteriana , Southern Blotting , Carbono/metabolismo , Carotenoides/biosíntesis , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Matriz Extracelular , Ácidos Grasos/análisis , Ácidos Grasos/química , Genes de ARNr/genética , Bacilos y Cocos Aerobios Gramnegativos/citología , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Datos de Secuencia Molecular , Movimiento , Filogenia , Pigmentos Biológicos/biosíntesis , ARN Bacteriano/genética , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Homología de Secuencia de Ácido Nucleico
12.
Environ Microbiol ; 9(2): 435-44, 2007 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-17222141

RESUMEN

In many legumes, the nitrogen fixing root nodules produce H2 gas that diffuses into soil. It has been demonstrated that such exposure of soil to H2 can promote plant growth. To assess whether this may be due to H2-oxidizing microorganisms, bacteria were isolated from soil treated with H2 under laboratory conditions and from soils collected adjacent to H2 producing soybean nodules. Nineteen isolates of H2-oxidizing bacteria were obtained and all exhibited a half-saturation coefficient (Ks) for H2 of about 1 ml l(-1). The isolates were identified as Variovorax paradoxus, Flavobacterium johnsoniae and Burkholderia spp. using conventional microbiological tests and 16S rRNA gene sequence analysis. Seventeen of the isolates enhanced (57-254%) root elongation of spring wheat seedlings. Using an Arabidopsis thaliana bioassay, plant biomass was increased by 11-27% when inoculated by one of four isolates of V. paradoxus or one isolate of Burkholderia that were selected for evaluation. The isolates of V. paradoxus found in both H2-treated soil and in soil adjacent to soybean nodules had the greatest impact on plant growth. The results are consistent with the hypothesis that H2-oxidizing bacteria in soils have plant growth promoting properties.


Asunto(s)
Bacilos y Cocos Aerobios Gramnegativos/aislamiento & purificación , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Hidrógeno/metabolismo , Plantas/microbiología , Microbiología del Suelo , Arabidopsis/crecimiento & desarrollo , Arabidopsis/microbiología , Burkholderia/clasificación , Burkholderia/aislamiento & purificación , Burkholderia/fisiología , Liasas de Carbono-Carbono/antagonistas & inhibidores , Liasas de Carbono-Carbono/metabolismo , Comamonadaceae/clasificación , Comamonadaceae/aislamiento & purificación , Comamonadaceae/fisiología , Flavobacterium/clasificación , Flavobacterium/aislamiento & purificación , Flavobacterium/fisiología , Gases/metabolismo , Bacilos y Cocos Aerobios Gramnegativos/metabolismo , Oxidación-Reducción , Desarrollo de la Planta , Propanolaminas/metabolismo , ARN Ribosómico 16S/química , ARN Ribosómico 16S/clasificación , Nódulos de las Raíces de las Plantas/crecimiento & desarrollo , Nódulos de las Raíces de las Plantas/microbiología , Análisis de Secuencia de ADN , Glycine max/crecimiento & desarrollo , Glycine max/microbiología , Triticum/crecimiento & desarrollo , Triticum/microbiología
13.
Environ Microbiol ; 8(10): 1816-24, 2006 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-16958762

RESUMEN

As an initial screen for microorganisms that produce ice-active macromolecules, ice-affinity was used to select microorganisms from soil consortia originating from three temperate regions. Once selected and subsequently purified to single colonies, these microbes were putatively identified by 16S ribosomal RNA sequencing and assayed for various ice-active properties. Ice-affinity selection appeared to select for bacteria with ice-associating activities: inhibition of ice recrystallization; ice nucleation; ice shaping. Although none of these activities were observed in Paenibacillus amyloliticus C8, others such as Chryseobacterium sp. GL8, demonstrated both ice recrystallization inhibition and ice-shaping activities. Pseudomonas borealis DL7 was classified as a type I ice nucleator, Flavobacterium sp. GL7, was identified as a type III ice nucleator and Acinetobacter radioresistens DL5 demonstrated ice recrystallization inhibition. In all, 19 different culturable bacteria were selected from the thousands of microbes in late-summer collected soil samples. Many of the selected microbes have been previously reported in glacial ice cores or polar sea ice, and of five isolates that were further characterized, four showed ice-associating activities. These results indicate the significant potential of ice-affinity selection even with temperate climate soils, suggesting that sampling in more extreme and remote areas is not required for the isolation of ice-active bacteria.


Asunto(s)
Bacilos y Cocos Aerobios Gramnegativos/fisiología , Hielo , Microbiología del Suelo , Acinetobacter/fisiología , Proteínas Anticongelantes/fisiología , Proteínas de la Membrana Bacteriana Externa/fisiología , Canadá , Chryseobacterium/fisiología , Clima Frío , Recuento de Colonia Microbiana , Escherichia coli/fisiología , Flavobacterium/fisiología , Reacción en Cadena de la Polimerasa , Pseudomonas/fisiología
14.
J Exp Bot ; 57(3): 559-69, 2006.
Artículo en Inglés | MEDLINE | ID: mdl-16397001

RESUMEN

Endophytic nitrogen-fixing bacteria have been isolated from graminaceous plants such as maize, rice, and sugarcane. They are thought to promote plant growth, not only by fixing nitrogen, but also by the production of plant hormones. The molecular mechanisms involved in this interaction are not yet clear. In this work, the identification of a receptor-like kinase (RLK), named SHR5, which may participate in signal transduction involved in the establishment of plant-endophytic bacteria interaction is described for the first time. SHR5 seems to be part of a novel subclass of RLKs present in a wide range of plant species. The expression of this gene is down-regulated in sugarcane plants associated exclusively with beneficial endophytic bacteria and is not a general response caused by micro-organisms or abiotic stress. In addition, more successful sugarcane-endophytic bacteria associations have a more pronounced decrease in SHR5 expression, suggesting that SHR5 mRNA levels in plant cells are inversely related to the efficiency of the association.


Asunto(s)
Bacilos y Cocos Aerobios Gramnegativos/fisiología , Fijación del Nitrógeno/fisiología , Fosfotransferasas/metabolismo , Proteínas de Plantas/metabolismo , Saccharum/enzimología , Saccharum/microbiología , Actinobacteria/fisiología , Secuencia de Aminoácidos , Basidiomycota/fisiología , ADN Complementario/genética , ADN Complementario/aislamiento & purificación , Regulación hacia Abajo , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Genotipo , Ácidos Indolacéticos/farmacología , Datos de Secuencia Molecular , Fosfotransferasas/genética , Filogenia , Proteínas de Plantas/genética , Receptores de Superficie Celular/genética , Receptores de Superficie Celular/metabolismo , Saccharum/genética , Análisis de Secuencia de Proteína , Cloruro de Sodio/farmacología , Temperatura
15.
Amino Acids ; 28(4): 363-7, 2005 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-15827688

RESUMEN

Large amounts of amino acids are produced by nitrogen-fixing bacteria such as Azotobacter, Azospirillum, Rhizobium, Mesorhizobium and Sinorhizobium when growing in culture media amended with different carbon and nitrogen sources. This kind of bacteria live in close association with plant roots enhanced plant growth mainly as a result of their ability to fix nitrogen, improving shoot and root development suppression of pathogenic bacteria and fungi, and increase of available P concentration. Also, it has been strongly evidenced that production of biologically substances such as amino acids by these rhizobacteria are involved in many of the processes that explain plant-grown promotion. This paper reviews literature concerning amino acids production by nitrogen-fixing bacteria. The role of amino acids in microbial interactions in the rhizosphere and establishment of plant bacterial association is also discussed.


Asunto(s)
Aminoácidos/metabolismo , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Fijación del Nitrógeno/fisiología , Nitrógeno/metabolismo , Raíces de Plantas/metabolismo , Plantas/metabolismo , Microbiología del Suelo
16.
Rev Latinoam Microbiol ; 47(1-2): 43-60, 2005.
Artículo en Español | MEDLINE | ID: mdl-17061545

RESUMEN

Nitrogen fixation an ancient process that may is have originated in the archaean Eon under the primitive atmosphere anoxygenic conditions. Diazotrophy is an exclusive process of prokaryotes, only Euryarchaeota and 6 of 54 Bacteria phyla have diazotrophs lineages. Some of them coevolved with flowering plants for the establishment of molecular bases of a mutualistic symbiosis relationship. In rhizobia, the nitrogen fixation occurs inside the nodules, special structures on the roots or stems of legumes. Nodule organogenesis starts with the bacterial nodulation factors (Nod factors) codified in large plasmids or symbiotic islands in the bacterial genomes. Nodulation genes had more recent origin than the nitrogen fixation ones because the origin of the nod gene is associated with the origin of the hosts. The 16S rRNA phylogeny groups rhizobia in 7 genuses of the alpha-Proteobacteria: Bradyrhizobium, Mesorhizobium, Rhizobium, Sinorhizobium, Methylobacterium and Devosia, and two genuses recently described in f-Proteobacteria: Burkholderia and Wautersia. The phylogenies obtained with other chromosomal genes are similar at the genus level, but it is incongruent with the symbiotic gene (nif & nod) phylogeny, because horizontal gene transfer has allowed their evolution in function to the legume host fitness.


Asunto(s)
Evolución Biológica , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Nódulos de las Raíces de las Plantas/microbiología , Biodiversidad , Bradyrhizobium/genética , Bradyrhizobium/fisiología , Burkholderia/genética , Burkholderia/fisiología , Cupriavidus/genética , Cupriavidus/fisiología , Genes Bacterianos , Islas Genómicas/genética , Bacilos y Cocos Aerobios Gramnegativos/clasificación , Bacilos y Cocos Aerobios Gramnegativos/genética , Magnoliopsida/microbiología , Fijación del Nitrógeno/genética , Filogenia , Plásmidos/genética , Plásmidos/fisiología , Rhizobiaceae/genética , Rhizobiaceae/fisiología , Nódulos de las Raíces de las Plantas/fisiología , Especificidad de la Especie , Simbiosis/genética
17.
Can J Microbiol ; 47(9): 842-54, 2001 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-11683466

RESUMEN

The fate of Ralstonia solanacearum bv. 2, the causative agent of brown rot in potato, in aquatic habitats of temperate climate regions is still poorly understood. In this study, the population dynamics and the physiological response of R. solanacearum bv. 2 were tested in sterile pure water and in agricultural drainage water obtained from waterways near potato cropping fields in The Netherlands. The behaviour of five different biovar 2 isolates in drainage water at 20 degrees C was very similar among strains. One typical isolate with consistent virulence (strain 1609) was selected for further studies. The effects of temperature, light, canal sediment, seawater salts, and the presence of competing microorganisms on the survival of strain 1609 were assessed. Moreover, the impacts of the physiological state of the inoculum and the inoculum density were analyzed. The population dynamics of strain 1609 in sterile pure water were also characterized. In sterile pure water, the fate of R. solanacearum 1609 cells depended strongly on temperature, irrespective of inoculum density or physiological state. At 4 degrees C and 44 degrees C, strain 1609 CFU numbers showed declines, whereas the strain was able to undergo several cell divisions at 12 degrees C, 20 degrees C, and 28 degrees C. At 20 degrees C and 28 degrees C, repeated growth took place when the organism was serially transferred, at low inoculum density, from grown water cultures into fresh water devoid of nutrients. Both at low and high cell densities and regardless of physiological state, R. solanacearum 1609 cells persisted as culturable cells for limited periods of time in drainage water. A major effect of temperature was found, with survival being maximal at 12 degrees C, 20 degrees C, and 28 degrees C. Temperatures of 4 degrees C, 36 degrees C, or 44 degrees C induced accelerated declines of the culturable cell numbers. The drainage water biota had a strong effect on survival at 12 degrees C, 20 degrees C, and 28 degrees C, as the persistence of strain 1609 was significantly enhanced in sterile drainage water systems. Furthermore, there was a negative effect of incident light, in a light:dark regime, on the survival of R. solanacearum 1609 in natural drainage water. Also, levels of seawater salts realistic for drainage water in coastal areas were detrimental to strain survival. Ralstonia solanacearum 1609 showed considerable persistence in canal sediment saturated with drainage water, but died out quickly when this sediment was subjected to drying. Evidence was obtained for the conversion of R. solanacearum 1609 cells to nonculturable cells in water microcosms kept at 4 degrees C, but not in those kept at 20 degrees C. A substantial fraction of the cells found to be nonculturable were still viable, as evidenced by the direct viable count and by staining with the redox dye 5-cyano-2,3-ditolyl tetrazolium chloride. The potential occurrence of viable-but-nonculturable cells in natural waters poses a problem for the detection of R. solanacearum by cultivation-based methods.


Asunto(s)
Bacilos y Cocos Aerobios Gramnegativos/fisiología , Microbiología del Agua , Agricultura , Ecología , Bacilos y Cocos Aerobios Gramnegativos/crecimiento & desarrollo , Luz , Temperatura , Factores de Tiempo
18.
Int J Syst Bacteriol ; 48 Pt 3: 677-86, 1998 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-9734022

RESUMEN

Nine different strains, CTCBS1T or CTCBS9, were identified to be the causative agents of black spots on the surface of raw cured meat products. The formation of black spots under aerobic conditions is reproducible upon reinoculation of meat products with any of these strains, indicating that they are the causative agent. The strains were Gram-negative, catalase-positive and obligately aerobic rods. The G+C content of DNA of strain CTCBS1T is 56.0 +/- 0.3 mol%. The content of non-polar main fatty acids were 16:0, 16:1, 18:1 and 19:0 cyc. Its phylogenetic position was elucidated by comparative sequence analysis of the 16S rRNA gene. Overall sequence similarity to other bacteria does not exceed 93.3%. Isolate CTCBS1T clustered phylogenetically within the gamma-subclass of the Proteobacteria and is closely related to members of Halomonas (90:5-91.9%) and to Zymobacter palmae (93.3%). A genetic homogeneity of the nine strains was demonstrated by M13 random amplified polymorphic DNA-PCR, whereas differentiation from other genera, e.g. Zymobacter and Pseudomonas, could easily be achieved by their chemotaxonomic characteristics. Taxonomic data revealed the status of a separate genus for which the name Carnimonas gen. nov., sp., nov. is proposed. Despite chemotaxonomic and physiological similarities, the new genus is at present not a member of the family Halomonadacease because of the lack of two out of 15 descriptive 16S rRNA signature sequences. The first member of the new genus is Carnimonas nigrificans. The use of a specific, 16S rRNA-targeted oligonucleotide primer allowed the identification of all nine strains of C. nigrificans in a PCR assay. Toxicological studies showed no pathogenic potential for C. nigrificans strain CTCBS1T (CECT 4437T).


Asunto(s)
Bacilos y Cocos Aerobios Gramnegativos/clasificación , Productos de la Carne/microbiología , Animales , Secuencia de Bases , Bacilos y Cocos Aerobios Gramnegativos/genética , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Ratones , Datos de Secuencia Molecular , Filogenia , Reacción en Cadena de la Polimerasa , Técnica del ADN Polimorfo Amplificado Aleatorio
19.
Int J Syst Evol Microbiol ; 50 Pt 1: 219-224, 2000 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-10826807

RESUMEN

Bdellovibrios are unique bacteria with the ability to prey upon a wide variety of susceptible Gram-negative bacteria. Micro-organisms exhibiting this trait have been included in the genus Bdellovibrio despite their isolation from diverse habitats and relatively unstudied taxonomic relatedness. In this study, 16S rDNA sequences were compared from known terrestrial Bdellovibrio species, Bdellovibrio bacteriovorus 100T, Bdellovibrio stolpii Uki2T and Bdellovibrio starrii A3.12T in order to study their phylogenetic relationship. The two sequences from B. stolpii Uki2T and B. starrii A3.12T were 90.0% similar to each other but exhibited only 81.7% and 81.2% similarity, respectively to B. bacteriovorus 100T. Phylogenetic analysis indicated that B. bacteriovorus 100T clustered in a separate clade from B. starrii A3.12T and B. stolpii Uki2T, demonstrating only a distant relationship between B. bacteriovorus 100T and the other two recognized type species. DNA-DNA hybridization experiments also demonstrated <4% hybridization between these three species. On the basis of the results obtained from the phylogenetic analysis and DNA-DNA hybridization studies, it is proposed that B. stolpii Uki2T and B. starrii A3.12T should be transferred to a new genus, Bacteriovorax gen. nov. as Bacteriovorax stolpii comb. nov. and Bacteriovorax starrii comb. nov., respectively. It is also proposed that the type species for the new genus Bacteriovorax should be Bacteriovorax stolpii comb. nov.


Asunto(s)
Bdellovibrio/clasificación , Bacilos y Cocos Aerobios Gramnegativos/clasificación , Composición de Base , Bdellovibrio/genética , Bdellovibrio/fisiología , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Bacilos y Cocos Aerobios Gramnegativos/genética , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Datos de Secuencia Molecular , Hibridación de Ácido Nucleico , Filogenia , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
20.
Int J Syst Bacteriol ; 48 Pt 2: 537-42, 1998 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-9731295

RESUMEN

Four bacterial strains were isolated from larval cultures and collectors of the scallop Pecten maximus. They showed a high level of intragroup genomic relatedness (84-95%) as determined by DNA-DNA hybridization. The cells were Gram-negative, strictly aerobic, motile, ovoid rods. They grew at temperatures from 15 to 37 degrees C and from pH 7.0 to 10, but did not grow in the absence of NaCl and required growth factors. They had the ability to use a wide variety of compounds as sole carbon source: D-mannose, D-galactose, D-fructose, D-glucose, D-xylose, melibiose, trehalose, maltose, cellobiose, sucrose, mesoerythritol, D-mannitol, glycerol, D-sorbitol, meso-inositol, succinate, propionate, butyrate, gamma-aminobutyrate, DL-hydroxybutyrate, 2-ketoglutarate, pyruvate, fumarate, glycine, L-alpha-alanine, beta-alanine, L-glutamate, L-arginine, L-lysine, L-ornithine and L-proline. They exhibited oxidase and catalase activities but no denitrification activity. The isolates did not contain bacteriochlorophyll a. The G + C content ranged from 57.6 to 58 mol%. Phylogenetic analyses of the 16S rRNA sequence revealed that these isolates belong to the genus Roseobacter. On the basis of quantitative hybridization data, it is proposed that these isolates should be placed in a new species, Roseobacter gallaeciensis. The type strain is Roseobacter gallaeciensis BS107T (= CIP 105210T).


Asunto(s)
Bacilos y Cocos Aerobios Gramnegativos/clasificación , Moluscos/microbiología , Animales , Composición de Base , Secuencia de Bases , ADN Bacteriano , Bacilos y Cocos Aerobios Gramnegativos/metabolismo , Bacilos y Cocos Aerobios Gramnegativos/fisiología , Pruebas de Sensibilidad Microbiana , Datos de Secuencia Molecular , Hibridación de Ácido Nucleico , Filogenia , ARN Bacteriano , ARN Ribosómico
SELECCIÓN DE REFERENCIAS
DETALLE DE LA BÚSQUEDA