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1.
Mol Cell ; 64(6): 1102-1108, 2016 12 15.
Artículo en Inglés | MEDLINE | ID: mdl-27867010

RESUMEN

Bacteria commonly exist in high cell density populations, making them prone to viral predation and horizontal gene transfer (HGT) through transformation and conjugation. To combat these invaders, bacteria possess an arsenal of defenses, such as CRISPR-Cas adaptive immunity. Many bacterial populations coordinate their behavior as cell density increases, using quorum sensing (QS) signaling. In this study, we demonstrate that QS regulation results in increased expression of the type I-E, I-F, and III-A CRISPR-Cas systems in Serratia cells in high-density populations. Strains unable to communicate via QS were less effective at defending against invaders targeted by any of the three CRISPR-Cas systems. Additionally, the acquisition of immunity by the type I-E and I-F systems was impaired in the absence of QS signaling. We propose that bacteria can use chemical communication to modulate the balance between community-level defense requirements in high cell density populations and host fitness costs of basal CRISPR-Cas activity.


Asunto(s)
Proteínas Bacterianas/genética , Sistemas CRISPR-Cas/inmunología , Endodesoxirribonucleasas/genética , Regulación Bacteriana de la Expresión Génica/inmunología , Percepción de Quorum/genética , Serratia/genética , 4-Butirolactona/análogos & derivados , 4-Butirolactona/farmacología , Proteínas Bacterianas/inmunología , Proteínas Asociadas a CRISPR/genética , Proteínas Asociadas a CRISPR/inmunología , Repeticiones Palindrómicas Cortas Agrupadas y Regularmente Espaciadas , Endodesoxirribonucleasas/inmunología , Percepción de Quorum/efectos de los fármacos , Percepción de Quorum/inmunología , Proteínas Represoras/genética , Proteínas Represoras/inmunología , Serratia/efectos de los fármacos , Serratia/inmunología
2.
Mol Cell ; 62(6): 824-833, 2016 06 16.
Artículo en Inglés | MEDLINE | ID: mdl-27211867

RESUMEN

Bacteria and archaea employ adaptive immunity against foreign genetic elements using CRISPR-Cas systems. To generate immunological memory, the Cas1-Cas2 protein complex captures 30-40 base pair segments of foreign DNA and catalyzes their integration into the host genome as unique spacer sequences. Although spacers are inserted strictly at the A-T-rich leader end of CRISPR loci in vivo, the molecular mechanism of leader-specific spacer integration remains poorly understood. Here we show that the E. coli integration host factor (IHF) protein is required for spacer acquisition in vivo and for integration into linear DNA in vitro. IHF binds to the leader sequence and induces a sharp DNA bend, allowing the Cas1-Cas2 integrase to catalyze the first integration reaction at the leader-repeat border. Together, these results reveal that Cas1-Cas2-mediated spacer integration requires IHF-induced target DNA bending and explain the elusive role of CRISPR leader sequences during spacer acquisition.


Asunto(s)
Inmunidad Adaptativa , Proteínas Asociadas a CRISPR/inmunología , Sistemas CRISPR-Cas/inmunología , Repeticiones Palindrómicas Cortas Agrupadas y Regularmente Espaciadas/inmunología , ADN Bacteriano/inmunología , Endodesoxirribonucleasas/inmunología , Endonucleasas/inmunología , Proteínas de Escherichia coli/inmunología , Escherichia coli/inmunología , Memoria Inmunológica , Factores de Integración del Huésped/inmunología , Sitios de Unión , Proteínas Asociadas a CRISPR/genética , Proteínas Asociadas a CRISPR/metabolismo , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Bacteriano/metabolismo , Endodesoxirribonucleasas/genética , Endodesoxirribonucleasas/metabolismo , Endonucleasas/genética , Endonucleasas/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Factores de Integración del Huésped/genética , Factores de Integración del Huésped/metabolismo , Conformación de Ácido Nucleico , Unión Proteica , Relación Estructura-Actividad , Factores de Tiempo
3.
Nucleic Acids Res ; 45(15): 8978-8992, 2017 Sep 06.
Artículo en Inglés | MEDLINE | ID: mdl-28911114

RESUMEN

CRISPR-Cas system provides the adaptive immunity against invading genetic elements in prokaryotes. Recently, we demonstrated that Csa3a regulator mediates spacer acquisition in Sulfolobus islandicus by activating the expression of Type I-A adaptation cas genes. However, links between the activation of spacer adaptation and CRISPR transcription/processing, and the requirement for DNA repair genes during spacer acquisition remained poorly understood. Here, we demonstrated that de novo spacer acquisition required Csa1, Cas1, Cas2 and Cas4 proteins of the Sulfolobus Type I-A system. Disruption of genes implicated in crRNA maturation or DNA interference led to a significant accumulation of acquired spacers, mainly derived from host genomic DNA. Transcriptome and proteome analyses showed that Csa3a activated expression of adaptation cas genes, CRISPR RNAs, and DNA repair genes, including herA helicase, nurA nuclease and DNA polymerase II genes. Importantly, Csa3a specifically bound the promoters of the above DNA repair genes, suggesting that they were directly activated by Csa3a for adaptation. The Csa3a regulator also specifically bound to the leader sequence to activate CRISPR transcription in vivo. Our data indicated that the Csa3a regulator couples transcriptional activation of the CRISPR-Cas system and DNA repair genes for spacer adaptation and efficient interference of invading genetic elements.


Asunto(s)
Proteínas Arqueales/genética , Sistemas CRISPR-Cas , Reparación del ADN , ADN de Archaea/genética , Regulación de la Expresión Génica Arqueal , Sulfolobus/genética , Activación Transcripcional , Proteínas Arqueales/inmunología , Secuencia de Bases , Proteínas Asociadas a CRISPR/genética , Proteínas Asociadas a CRISPR/inmunología , Repeticiones Palindrómicas Cortas Agrupadas y Regularmente Espaciadas , ADN Helicasas/genética , ADN Helicasas/inmunología , ADN Polimerasa II/genética , ADN Polimerasa II/inmunología , ADN de Archaea/inmunología , Endodesoxirribonucleasas/genética , Endodesoxirribonucleasas/inmunología , Chaperonas Moleculares/genética , Chaperonas Moleculares/inmunología , Regiones Promotoras Genéticas , Alineación de Secuencia , Homología de Secuencia de Ácido Nucleico , Sulfolobus/inmunología
4.
Nucleic Acids Res ; 45(1): 367-381, 2017 Jan 09.
Artículo en Inglés | MEDLINE | ID: mdl-27899566

RESUMEN

CRISPR-Cas system epitomizes prokaryote-specific quintessential adaptive defense machinery that limits the genome invasion of mobile genetic elements. It confers adaptive immunity to bacteria by capturing a protospacer fragment from invading foreign DNA, which is later inserted into the leader proximal end of CRIPSR array and serves as immunological memory to recognize recurrent invasions. The universally conserved Cas1 and Cas2 form an integration complex that is known to mediate the protospacer invasion into the CRISPR array. However, the mechanism by which this protospacer fragment gets integrated in a directional fashion into the leader proximal end is elusive. Here, we employ CRISPR/dCas9 mediated immunoprecipitation and genetic analysis to identify Integration Host Factor (IHF) as an indispensable accessory factor for spacer acquisition in Escherichia coli Further, we show that the leader region abutting the first CRISPR repeat localizes IHF and Cas1-2 complex. IHF binding to the leader region induces bending by about 120° that in turn engenders the regeneration of the cognate binding site for protospacer bound Cas1-2 complex and brings it in proximity with the first CRISPR repeat. This appears to guide Cas1-2 complex to orient the protospacer invasion towards the leader-repeat junction thus driving the integration in a polarized fashion.


Asunto(s)
Proteínas Asociadas a CRISPR/genética , Repeticiones Palindrómicas Cortas Agrupadas y Regularmente Espaciadas , ADN Bacteriano/genética , Endodesoxirribonucleasas/genética , Endonucleasas/genética , Proteínas de Escherichia coli/genética , Escherichia coli/genética , Factores de Integración del Huésped/genética , Secuencia de Bases , Sitios de Unión , Proteínas Asociadas a CRISPR/inmunología , Sistemas CRISPR-Cas/inmunología , ADN Bacteriano/química , ADN Bacteriano/inmunología , Endodesoxirribonucleasas/inmunología , Endonucleasas/inmunología , Escherichia coli/inmunología , Proteínas de Escherichia coli/inmunología , Factores de Integración del Huésped/inmunología , Conformación de Ácido Nucleico , Unión Proteica , Dominios y Motivos de Interacción de Proteínas , Señales de Clasificación de Proteína/genética , Estructura Secundaria de Proteína
5.
J Immunol ; 196(3): 1348-54, 2016 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-26729810

RESUMEN

Detection of endogenous nucleic acids by cytosolic receptors, dependent on STING, and endosomal sensors, dependent on Unc93b1, can provoke inflammatory responses that contribute to a variety of autoimmune and autoinflammatory diseases. In DNase II-deficient mice, the excessive accrual of undegraded DNA leads to both a STING-dependent inflammatory arthritis and additional Unc93b1-dependent autoimmune manifestations, including splenomegaly, extramedullary hematopoiesis, and autoantibody production. In this study, we use bone marrow chimeras to show that clinical and histological inflammation in the joint depends upon DNase II deficiency in both donor hematopoietic cells and host radioresistant cells. Additional features of autoimmunity in these mice, known to depend on Unc93b1 and therefore endosomal TLRs, also require DNase II deficiency in both donor and host compartments, but only require functional TLRs in the hematopoietic cells. Collectively, our data demonstrate a major role of both stromal and hematopoietic cells in all aspects of DNA-driven autoimmunity. These findings further point to the importance of cytosolic nucleic acid sensors in creating an inflammatory environment that facilitates the development of Unc93b1-dependent autoimmunity.


Asunto(s)
Artritis Experimental/inmunología , Autoinmunidad/inmunología , Células Madre Hematopoyéticas/inmunología , Células del Estroma/inmunología , Animales , Modelos Animales de Enfermedad , Endodesoxirribonucleasas/deficiencia , Endodesoxirribonucleasas/inmunología , Citometría de Flujo , Proteínas de la Membrana/inmunología , Proteínas de Transporte de Membrana/inmunología , Ratones , Ratones Endogámicos C57BL , Ratones Noqueados , Quimera por Radiación
6.
J Immunol ; 194(4): 1403-7, 2015 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-25601924

RESUMEN

In mice that fail to express the phagolysosomal endonuclease DNase II and the type I IFN receptor, excessive accrual of undegraded DNA results in a STING-dependent, TLR-independent inflammatory arthritis. These double-knockout (DKO) mice develop additional indications of systemic autoimmunity, including anti-nuclear autoantibodies and splenomegaly, that are not found in Unc93b1(3d/3d) DKO mice and, therefore, are TLR dependent. The DKO autoantibodies predominantly detect RNA-associated autoantigens, which are commonly targeted in TLR7-dominated systemic erythematosus lupus-prone mice. To determine whether an inability of TLR9 to detect endogenous DNA could explain the absence of dsDNA-reactive autoantibodies in DKO mice, we used a novel class of bifunctional autoantibodies, IgM/DNA dual variable domain Ig molecules, to activate B cells through a BCR/TLR9-dependent mechanism. DKO B cells could not respond to the IgM/DNA dual variable domain Ig molecule, despite a normal response to both anti-IgM and CpG ODN 1826. Thus, DKO B cells only respond to RNA-associated ligands because DNase II-mediated degradation of self-DNA is required for TLR9 activation.


Asunto(s)
Autoanticuerpos/inmunología , Autoantígenos/inmunología , Autoinmunidad/inmunología , Linfocitos B/inmunología , Endodesoxirribonucleasas/deficiencia , Activación de Linfocitos/inmunología , Animales , Especificidad de Anticuerpos/inmunología , ADN , Endodesoxirribonucleasas/inmunología , Ensayo de Inmunoadsorción Enzimática , Citometría de Flujo , Humanos , Ligandos , Ratones , Ratones Noqueados , Receptores de Antígenos de Linfocitos B/inmunología , Receptor Toll-Like 9/inmunología
7.
Immunol Cell Biol ; 89(1): 90-9, 2011 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-20548325

RESUMEN

New information has profoundly improved our insight into the processes that account for lupus nephritis. This review summarizes the data proving that secondary necrotic chromatin fragments are generated and retained in kidneys at time-points when the major renal nuclease Dnase-1 is selectively and severely downregulated. Second, we discuss data, which may indicate that nuclease deficiencies are not associated with autoimmunity to chromatin. Secondary to downregulation of renal Dnase-1, large chromatin fragment-immunoglobulin G complexes are accumulated in glomerular basement membranes of patients producing anti-chromatin autoantibodies. Exposure of chromatin in situ in glomeruli is the factor that renders anti-chromatin (anti-dsDNA and anti-nucleosome) antibodies nephritogenic. Without exposed chromatin, they circulate as non-pathogenic antibodies. This shows that acquired loss of renal Dnase-1 enzyme activity is a dominant event responsible for the progression of lupus nephritis into end-stage disease. Before the loss of Dnase-1, lupus-prone (NZB × NZW) F1 mice develop mild or silent nephritis with mesangial immune complex deposits, which correlates solely with onset of anti-dsDNA antibody production. The principal cellular and molecular requirements needed to produce these autoantibodies have been explained experimentally, but the mechanism(s) accounting for them in vivo in context of lupus nephritis have not yet been determined. However, published data show that defects in nucleases operational in apoptotic or necrotic cell death are not associated with the induction of nephritogenic anti-dsDNA autoantibodies. The data discussed in this study explain how an unusual exposure of chromatin may be a central factor in the evolution of lupus nephritis in (NZB x NZW) F1 mice, but not in promoting nephritogenic chromatin-specific autoimmunity.


Asunto(s)
Autoinmunidad/genética , Autoinmunidad/inmunología , Endodesoxirribonucleasas/deficiencia , Endodesoxirribonucleasas/inmunología , Nefritis Lúpica/inmunología , Animales , Anticuerpos Antinucleares/inmunología , Anticuerpos Antinucleares/metabolismo , Complejo Antígeno-Anticuerpo/inmunología , Complejo Antígeno-Anticuerpo/metabolismo , Cromatina/inmunología , Cromatina/metabolismo , Regulación hacia Abajo/inmunología , Endodesoxirribonucleasas/genética , Endodesoxirribonucleasas/metabolismo , Humanos , Fallo Renal Crónico/inmunología , Fallo Renal Crónico/patología , Nefritis Lúpica/patología , Ratones , Ratones Endogámicos NZB
8.
Biochemistry (Mosc) ; 76(9): 1065-72, 2011 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-22082277

RESUMEN

Relative DNase, RNase (efficiency of hydrolysis of ribo- and deoxyribooligonucleotides (ON)), and phosphatase (removal of the ON 5' terminal phosphate) catalytic activities of antibodies (AB) obtained after rabbit immunization by DNA, DNase I, and DNase II were compared. It is shown that electrophoretically homogeneous preparations of polyclonal AB from non-immunized rabbits did not exhibit such activities. Immunization of rabbits by DNA, DNase I, and DNase II results in generation of IgG abzymes that exhibit high activity in the ON hydrolysis reaction and even higher activity in cleavage of 5' terminal phosphate of ON. In this case K(m) values for supercoiled plasmid DNA and ON found in reactions of their AB-dependent nuclease hydrolysis and phosphatase cleavage of 5' terminal phosphate differ by 2-4 orders of magnitude. This shows that nuclease and phosphatase activities belong to different abzyme fractions within polyclonal AB. Thus, in this work data indicative of the possibility of a formation of antibodies exhibiting phosphatase activity after immunization of animals with DNA, DNase I, and DNase II, were obtained for the first time. Possible reasons for production of AB with phosphatase activity after immunization of rabbits with these immunogens are discussed.


Asunto(s)
Anticuerpos Catalíticos/metabolismo , ADN/inmunología , Desoxirribonucleasa I/metabolismo , Endodesoxirribonucleasas/metabolismo , Inmunoglobulina G/metabolismo , Monoéster Fosfórico Hidrolasas/metabolismo , Ribonucleasas/metabolismo , Animales , Anticuerpos Catalíticos/química , Bovinos , Desoxirribonucleasa I/química , Desoxirribonucleasa I/inmunología , Endodesoxirribonucleasas/química , Endodesoxirribonucleasas/inmunología , Inmunización , Inmunoglobulina G/química , Cinética , Monoéster Fosfórico Hidrolasas/química , Conejos , Ribonucleasas/química , Ribonucleasas/inmunología
9.
Int Immunopharmacol ; 101(Pt A): 108184, 2021 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-34601334

RESUMEN

Trichinellosis is a foodborne zoonosis caused by Trichinella spiralis (T. spiralis) that not only causes considerable economic losses for the global pig breeding and food industries, but also seriously threats the health of human. Therefore, it is very necessary to develop an effective vaccine to prevent trichinellosis. In this study, the invasive Lactobacillus plantarum (L. plantarum) expressing fibronectin-binding protein A (FnBPA) was served as a live bacterial vector to deliver DNA to the host to produce a novel oral DNA vaccine. Co-expressing T. spiralis SS1 and murine interleukin-4 (mIL-4) of DNA vaccine were constructed and subsequently delivered to intestinal epithelial cells via invasive L. plantarum. At 10 days after the third immunization, the experimental mice were challenged with 350 T. spiralis infective larvae. The results found that the mice orally vaccinated with invasive L. plantarum harboring pValac-SS1/pSIP409-FnBPA not only stimulated the production of anti-SS1-specific IgG, Th1/Th2 cell cytokines, and secreted(s) IgA but also decreased worm burden and intestinal damage. However, the mice inoculated with invasive L. plantarum co-expressing SS1 and mIL-4 (pValac-SS1-IL-4/pSIP409-FnBPA) induced the highest protective immune response against T. spiralis infection. The DNA vaccine delivered by invasive L. plantarum provides a novel idea for the prevention of T. spiralis infection.


Asunto(s)
Vacunas Bacterianas/uso terapéutico , Endodesoxirribonucleasas/genética , Proteínas del Helminto/genética , Interleucina-4/genética , Lactobacillus plantarum/inmunología , Vacunación Basada en Ácidos Nucleicos/uso terapéutico , Trichinella spiralis/inmunología , Triquinelosis/prevención & control , Administración Oral , Animales , Western Blotting , Endodesoxirribonucleasas/inmunología , Técnica del Anticuerpo Fluorescente , Proteínas del Helminto/inmunología , Interleucina-4/inmunología , Masculino , Ratones , Ratones Endogámicos BALB C , Triquinelosis/inmunología , Vacunas Sintéticas/uso terapéutico
10.
J Exp Med ; 218(5)2021 05 03.
Artículo en Inglés | MEDLINE | ID: mdl-33783474

RESUMEN

Antibodies to double-stranded DNA (dsDNA) are prevalent in systemic lupus erythematosus (SLE), particularly in patients with lupus nephritis, yet the nature and regulation of antigenic cell-free DNA (cfDNA) are poorly understood. Null mutations in the secreted DNase DNASE1L3 cause human monogenic SLE with anti-dsDNA autoreactivity. We report that >50% of sporadic SLE patients with nephritis manifested reduced DNASE1L3 activity in circulation, which was associated with neutralizing autoantibodies to DNASE1L3. These patients had normal total plasma cfDNA levels but showed accumulation of cfDNA in circulating microparticles. Microparticle-associated cfDNA contained a higher fraction of longer polynucleosomal cfDNA fragments, which bound autoantibodies with higher affinity than mononucleosomal fragments. Autoantibodies to DNASE1L3-sensitive antigens on microparticles were prevalent in SLE nephritis patients and correlated with the accumulation of cfDNA in microparticles and with disease severity. DNASE1L3-sensitive antigens included DNA-associated proteins such as HMGB1. Our results reveal autoantibody-mediated impairment of DNASE1L3 activity as a common nongenetic mechanism facilitating anti-dsDNA autoreactivity in patients with severe sporadic SLE.


Asunto(s)
Anticuerpos Antinucleares/inmunología , Autoanticuerpos/inmunología , ADN/inmunología , Endodesoxirribonucleasas/inmunología , Lupus Eritematoso Sistémico/inmunología , Nefritis Lúpica/inmunología , Adulto , Animales , Anticuerpos Antinucleares/sangre , Autoanticuerpos/sangre , Micropartículas Derivadas de Células/inmunología , Micropartículas Derivadas de Células/metabolismo , Ácidos Nucleicos Libres de Células/sangre , Ácidos Nucleicos Libres de Células/inmunología , Niño , Endodesoxirribonucleasas/sangre , Endodesoxirribonucleasas/genética , Endodesoxirribonucleasas/metabolismo , Femenino , Células HEK293 , Proteína HMGB1/inmunología , Proteína HMGB1/metabolismo , Humanos , Lupus Eritematoso Sistémico/metabolismo , Nefritis Lúpica/metabolismo , Masculino , Ratones Endogámicos C57BL , Ratones Noqueados , Ratones Transgénicos , Índice de Severidad de la Enfermedad
11.
Int Immunol ; 21(4): 349-60, 2009 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-19208753

RESUMEN

The serum of patients with many autoimmune (AI) diseases contains small fractions of antibodies possessing both DNase and RNase activities. It was shown that immunization of rabbits with DNA, RNA, DNase I and RNase leads to production of antibodies with DNase and RNase activities. It is not known whether anti-idiotypic antibodies against DNase II can possess DNase or RNase activity. Electrophoretically and immunologically homogeneous polyclonal IgGs (pIgGs) from the sera of rabbits immunized with DNase II were obtained by sequential chromatography of the serum proteins on Protein A-Sepharose and gel filtration. It was shown for the first time that immunization of healthy rabbits with bovine DNase II produces IgGs with intrinsic DNase and RNase activities. IgGs from rabbits immunized with BSA or non-immunized animals were catalytically inactive. It was shown that approximately 10% of the total IgG DNase and RNase activities belong to anti-idiotypic antibodies to DNase II ( approximately 0.1% of total pIgGs), while 90% of the activities did not interact with Sepharose bearing antibodies against DNase II and might be antibodies to nucleic acids bound to DNase II. Affinity chromatography on DNA-cellulose using elution of antibodies with different concentration of NaCl and an acidic buffer separated catalytic IgGs into five antibody subfractions, three of which hydrolyzed RNA faster than DNA while two subfractions demonstrated only DNase activity. Our data suggest that a fraction of abzymes from AI patients hydrolyzing both DNA and RNA can contain subfraction of antibodies against DNase II.


Asunto(s)
Anticuerpos Antiidiotipos/metabolismo , Anticuerpos Catalíticos/metabolismo , Endodesoxirribonucleasas/inmunología , Endodesoxirribonucleasas/metabolismo , Ribonucleasas/metabolismo , Animales , Anticuerpos Antiidiotipos/biosíntesis , Anticuerpos Antiidiotipos/inmunología , Anticuerpos Catalíticos/biosíntesis , Anticuerpos Catalíticos/inmunología , Bovinos , Inmunización , Conejos , Ribonucleasas/inmunología
12.
Front Immunol ; 10: 2540, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31736964

RESUMEN

Immunoglobulin (Ig) diversification occurs via somatic hypermutation (SHM) and class switch recombination (CSR), and is initiated by activation-induced deaminase (AID), which converts cytosine to uracil. Variable (V) region genes undergo SHM to create amino acid substitutions that produce antibodies with higher affinity for antigen. The conversion of cytosine to uracil in DNA promotes mutagenesis. Two distinct DNA repair mechanisms regulate uracil processing in Ig genes. The first involves base removal by the uracil DNA glycosylase (UNG), and the second detects uracil via the mismatch repair (MMR) complex. Methyl binding domain protein 4 (MBD4) is a uracil glycosylase and an intriguing candidate for involvement in somatic hypermutation because of its interaction with the MMR MutL homolog 1 (MLH1). We found that the DNA uracil glycosylase domain of MBD4 is highly conserved among mammals, birds, shark, and insects. Conservation of the human and chicken MBD4 uracil glycosylase domain structure is striking. Here we examined the function of MBD4 in chicken DT40 B cells which undergo constitutive SHM. We constructed structural variants of MBD4 DT40 cells using CRISPR/Cas9 genome editing. Disruption of the MBD4 uracil glycosylase catalytic region increased SHM frequency in IgM loss assays. We propose that MBD4 plays a role in SHM.


Asunto(s)
Proteínas Aviares/inmunología , Pollos/inmunología , Endodesoxirribonucleasas/inmunología , Inmunoglobulinas/genética , Hipermutación Somática de Inmunoglobulina , Uracil-ADN Glicosidasa/inmunología , Animales , Áfidos/genética , Áfidos/inmunología , Linfocitos B/inmunología , Línea Celular , Pollos/genética , Peces/genética , Peces/inmunología , Humanos , Cambio de Clase de Inmunoglobulina , Inmunoglobulinas/inmunología , Ratones , Ornitorrinco/genética , Ornitorrinco/inmunología , Dominios Proteicos , Tiburones/genética , Tiburones/inmunología
13.
Int Immunopharmacol ; 75: 105836, 2019 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-31450153

RESUMEN

Sepsis is one of the most significant challenges in intensive care units, which is associated with increased morbidity and mortality. Sepsis-associated encephalopathy (SAE) is a severe complication which can cause death and serious disabilities. Calcium signaling in astrocyte is essential for cellular activation and the potential resolution of infection or inflammation in SAE patients. The transient receptor potential melastatin 2 (TRPM2) channel has been identified as a unique fusion of a Ca2+-permeable nonselective cation channel, which plays an important role in inflammation and immune response. Because of its role as an oxidative stress sensor in astrocytes, we investigated the function of TRPM2 in inflammation mediators (interleukin (IL)-1ß, IL-6 and tumor necrosis factor (TNF)-α) release, Bcl-2/E1B-19 K-interacting protein 3 (BNIP3), apoptosis inducing factor (AIF) and Endonuclease G (Endo G) expression. We showed that TRPM2-KO mice, when intraperitoneally (i.p) injected with LPS, exhibited better neurologic assessment scores and decreased inflammatory injury in hippocampal neurons compared with wild-type (WT) mice. The absence of TRPM2 triggered less production of inflammatory mediators (IL-1ß, IL-6, TNF-α) and decreased apoptosis related proteins (BNIP3, AIF, Endo G) expressions in response to LPS induced sepsis. Furthermore, TRPM2-deficient astrocytes (transfected with TRPM2 siRNA) upon LPS stimulation also induced decreased IL-1ß, IL-6 and TNF-α level. Our data suggested that decreased production of inflammatory cytokines and apoptosis related proteins with TRPM2 deletion could regulate inflammatory stress and decrease inflammatory injury in hippocampal neurons, and consequently, ameliorate brain disorder.


Asunto(s)
Astrocitos/inmunología , Encefalopatías/inmunología , Citocinas/inmunología , Sepsis/inmunología , Canales Catiónicos TRPM/inmunología , Animales , Apoptosis , Factor Inductor de la Apoptosis/inmunología , Encefalopatías/etiología , Encefalopatías/patología , Citocinas/genética , Endodesoxirribonucleasas/inmunología , Hipocampo/inmunología , Hipocampo/patología , Lipopolisacáridos , Masculino , Proteínas de la Membrana/inmunología , Ratones Endogámicos C57BL , Ratones Noqueados , Proteínas Mitocondriales/inmunología , Sepsis/inducido químicamente , Sepsis/complicaciones , Sepsis/patología , Canales Catiónicos TRPM/genética
14.
Microbiol Spectr ; 6(1)2018 01.
Artículo en Inglés | MEDLINE | ID: mdl-29327679

RESUMEN

Conjugative plasmids are the main carriers of transmissible antibiotic resistance (AbR) genes. For that reason, strategies to control plasmid transmission have been proposed as potential solutions to prevent AbR dissemination. Natural mechanisms that bacteria employ as defense barriers against invading genomes, such as restriction-modification or CRISPR-Cas systems, could be exploited to control conjugation. Besides, conjugative plasmids themselves display mechanisms to minimize their associated burden or to compete with related or unrelated plasmids. Thus, FinOP systems, composed of FinO repressor protein and FinP antisense RNA, aid plasmids to regulate their own transfer; exclusion systems avoid conjugative transfer of related plasmids to the same recipient bacteria; and fertility inhibition systems block transmission of unrelated plasmids from the same donor cell. Artificial strategies have also been designed to control bacterial conjugation. For instance, intrabodies against R388 relaxase expressed in recipient cells inhibit plasmid R388 conjugative transfer; pIII protein of bacteriophage M13 inhibits plasmid F transmission by obstructing conjugative pili; and unsaturated fatty acids prevent transfer of clinically relevant plasmids in different hosts, promoting plasmid extinction in bacterial populations. Overall, a number of exogenous and endogenous factors have an effect on the sophisticated process of bacterial conjugation. This review puts them together in an effort to offer a wide picture and inform research to control plasmid transmission, focusing on Gram-negative bacteria.


Asunto(s)
Conjugación Genética/fisiología , Farmacorresistencia Bacteriana Múltiple/genética , Escherichia coli/genética , Escherichia coli/metabolismo , Transferencia de Gen Horizontal/fisiología , Plásmidos/fisiología , Antibacterianos/farmacología , Anticuerpos Monoclonales/inmunología , Proteínas Bacterianas/inmunología , Conjugación Genética/genética , Endodesoxirribonucleasas/inmunología , Ácidos Grasos Insaturados/química , Pili Sexual/inmunología , Pili Sexual/fisiología , Plásmidos/genética
15.
Nat Commun ; 9(1): 1866, 2018 05 14.
Artículo en Inglés | MEDLINE | ID: mdl-29760383

RESUMEN

Metastatic uveal melanoma is a deadly disease with no proven standard of care. Here we present a metastatic uveal melanoma patient with an exceptional high sensitivity to a PD-1 inhibitor associated with outlier CpG>TpG mutation burden, MBD4 germline deleterious mutation, and somatic MBD4 inactivation in the tumor. We identify additional tumors in The Cancer Genome Atlas (TCGA) cohorts with similar hypermutator profiles in patients carrying germline deleterious MBD4 mutations and somatic loss of heterozygosity. This MBD4-related hypermutator phenotype may explain unexpected responses to immune checkpoint inhibitors.


Asunto(s)
Anticuerpos Monoclonales Humanizados/uso terapéutico , Antineoplásicos Inmunológicos/uso terapéutico , Endodesoxirribonucleasas/genética , Mutación de Línea Germinal , Melanoma/genética , Receptor de Muerte Celular Programada 1/antagonistas & inhibidores , Neoplasias de la Úvea/genética , Anciano , Atlas como Asunto , Islas de CpG , Endodesoxirribonucleasas/inmunología , Enucleación del Ojo , Femenino , Genoma Humano , Humanos , Pérdida de Heterocigocidad , Metástasis Linfática , Melanoma/tratamiento farmacológico , Melanoma/inmunología , Melanoma/cirugía , Fenotipo , Mutación Puntual , Receptor de Muerte Celular Programada 1/genética , Receptor de Muerte Celular Programada 1/inmunología , Neoplasias de la Úvea/tratamiento farmacológico , Neoplasias de la Úvea/inmunología , Neoplasias de la Úvea/cirugía
16.
Mol Cell Biol ; 9(3): 965-73, 1989 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-2471063

RESUMEN

The cDNA of a Drosophila DNA repair gene, AP3, was cloned by screening an embryonic lambda gt11 expression library with an antibody that was originally prepared against a purified human apurinic-apyrimidinic (AP) endonuclease. The 1.2-kilobase (kb) AP3 cDNA mapped to a region on the third chromosome where a number of mutagen-sensitive alleles were located. The cDNA clone yielded an in vitro translation product of 35,000 daltons, in agreement with the predicted size of the translation product of the only open reading frame of AP3, and identical to the molecular size of an AP endonuclease activity recovered following sodium dodecyl sulfate-polyacrylamide gel electrophoresis of Drosophila extracts. The C-terminal portion of the predicted protein contained regions of presumptive DNA-binding domains, while the DNA sequence at the amino end of AP3 showed similarity to the Escherichia coli recA gene. AP3 is expressed as an abundant 1.3-kb mRNA that is detected throughout the life cycle of Drosophila melanogaster. Another 3.5-kb mRNA also hybridized to the AP3 cDNA, but this species was restricted to the early stages of development.


Asunto(s)
ADN Ligasas/genética , ADN/genética , Drosophila melanogaster/genética , Endodesoxirribonucleasas/genética , Proteínas de Escherichia coli , Polinucleótido Ligasas/genética , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Clonación Molecular , Reacciones Cruzadas , ADN Ligasas/inmunología , Reparación del ADN , ADN-(Sitio Apurínico o Apirimidínico) Liasa , Desoxirribonucleasa IV (Fago T4-Inducido) , Drosophila melanogaster/enzimología , Endodesoxirribonucleasas/inmunología , Humanos , Datos de Secuencia Molecular , Biosíntesis de Proteínas
17.
Nat Commun ; 8(1): 2176, 2017 12 19.
Artículo en Inglés | MEDLINE | ID: mdl-29259162

RESUMEN

Microbial nucleic acid recognition serves as the major stimulus to an antiviral response, implying a requirement to limit the misrepresentation of self nucleic acids as non-self and the induction of autoinflammation. By systematic screening using a panel of interferon-stimulated genes we identify two siblings and a singleton variably demonstrating severe neonatal anemia, membranoproliferative glomerulonephritis, liver fibrosis, deforming arthropathy and increased anti-DNA antibodies. In both families we identify biallelic mutations in DNASE2, associated with a loss of DNase II endonuclease activity. We record increased interferon alpha protein levels using digital ELISA, enhanced interferon signaling by RNA-Seq analysis and constitutive upregulation of phosphorylated STAT1 and STAT3 in patient lymphocytes and monocytes. A hematological disease transcriptomic signature and increased numbers of erythroblasts are recorded in patient peripheral blood, suggesting that interferon might have a particular effect on hematopoiesis. These data define a type I interferonopathy due to DNase II deficiency in humans.


Asunto(s)
Desoxirribonucleasas/deficiencia , Endodesoxirribonucleasas/deficiencia , Enfermedades Autoinflamatorias Hereditarias/enzimología , Interferón-alfa/inmunología , Transducción de Señal/inmunología , Adolescente , Antivirales/farmacología , Niño , Desoxirribonucleasas/genética , Desoxirribonucleasas/inmunología , Endodesoxirribonucleasas/genética , Endodesoxirribonucleasas/inmunología , Eritroblastos/inmunología , Femenino , Perfilación de la Expresión Génica , Hematopoyesis/inmunología , Enfermedades Autoinflamatorias Hereditarias/sangre , Enfermedades Autoinflamatorias Hereditarias/genética , Enfermedades Autoinflamatorias Hereditarias/inmunología , Humanos , Interferón-alfa/sangre , Interferón-alfa/metabolismo , Masculino , Mutación , Fosforilación , ARN Mensajero/análisis , Factor de Transcripción STAT1/metabolismo , Factor de Transcripción STAT3/metabolismo , Análisis de Secuencia de ARN , Regulación hacia Arriba/efectos de los fármacos
18.
J Clin Invest ; 126(11): 4219-4236, 2016 11 01.
Artículo en Inglés | MEDLINE | ID: mdl-27760045

RESUMEN

Alterations in the apoptosis of immune cells have been associated with autoimmunity. Here, we have identified a homozygous missense mutation in the gene encoding the base excision repair enzyme Nei endonuclease VIII-like 3 (NEIL3) that abolished enzymatic activity in 3 siblings from a consanguineous family. The NEIL3 mutation was associated with fatal recurrent infections, severe autoimmunity, hypogammaglobulinemia, and impaired B cell function in these individuals. The same homozygous NEIL3 mutation was also identified in an asymptomatic individual who exhibited elevated levels of serum autoantibodies and defective peripheral B cell tolerance, but normal B cell function. Further analysis of the patients revealed an absence of LPS-responsive beige-like anchor (LRBA) protein expression, a known cause of immunodeficiency. We next examined the contribution of NEIL3 to the maintenance of self-tolerance in Neil3-/- mice. Although Neil3-/- mice displayed normal B cell function, they exhibited elevated serum levels of autoantibodies and developed nephritis following treatment with poly(I:C) to mimic microbial stimulation. In Neil3-/- mice, splenic T and B cells as well as germinal center B cells from Peyer's patches showed marked increases in apoptosis and cell death, indicating the potential release of self-antigens that favor autoimmunity. These findings demonstrate that deficiency in NEIL3 is associated with increased lymphocyte apoptosis, autoantibodies, and predisposition to autoimmunity.


Asunto(s)
Enfermedades Autoinmunes , Linfocitos B/inmunología , Endodesoxirribonucleasas/deficiencia , Predisposición Genética a la Enfermedad , N-Glicosil Hidrolasas/deficiencia , Linfocitos T/inmunología , Proteínas Adaptadoras Transductoras de Señales/genética , Proteínas Adaptadoras Transductoras de Señales/inmunología , Animales , Apoptosis/efectos de los fármacos , Apoptosis/genética , Apoptosis/inmunología , Autoanticuerpos/inmunología , Enfermedades Autoinmunes/genética , Enfermedades Autoinmunes/inmunología , Enfermedades Autoinmunes/patología , Linfocitos B/patología , Endodesoxirribonucleasas/inmunología , Femenino , Células HeLa , Humanos , Masculino , Ratones , Ratones Noqueados , N-Glicosil Hidrolasas/inmunología , Poli I-C/farmacología , Linfocitos T/patología
19.
Biochim Biophys Acta ; 1570(3): 160-4, 2002 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-12020805

RESUMEN

Four murine monoclonal anti-human deoxyribonuclease II (DNase II) antibodies were obtained from BALB/c mice immunized with human DNase II purified from human liver. Both single radial enzyme diffusion (SRED) and DNA-cast polyacrylamide gel electrophoresis (DNA-cast PAGE) were very useful for obtaining the DNase II-specific antibodies. All of the antibodies showed specific inhibition of human DNase II enzyme activity and specific immunostaining of the 32-kDa enzyme band, which is one of the three non-identical subunits of human DNase II molecule separated by sodium dodecyl sulfate (SDS)-PAGE followed by blotting on a transfer membrane. A formyl-cellulofine resin conjugated with each antibody specifically adsorbed and efficiently desorbed the active DNase II enzyme. Insertion of the immunoaffinity step in our purification procedure made the purification of human DNase II easier, faster and more effective than the conventional procedure.


Asunto(s)
Anticuerpos Monoclonales , Endodesoxirribonucleasas/inmunología , Hígado/química , Animales , Cromatografía de Afinidad , Electroforesis en Gel de Poliacrilamida , Endodesoxirribonucleasas/química , Femenino , Humanos , Ratones , Ratones Endogámicos BALB C , Conejos
20.
J Mol Biol ; 277(3): 529-40, 1998 Apr 03.
Artículo en Inglés | MEDLINE | ID: mdl-9533878

RESUMEN

Endonuclease VII (endo VII) of bacteriophage T4 is a Holliday-structure resolving enzyme that can also recognize many other defects in DNA via an altered secondary structure. The protein has a molecular mass of 18 kDa and exists as a dimer in solution. Here we report the production and characterization of monoclonal antibodies (mAbs) directed against the highly purified enzyme. From one fusion 15 hybrid cell lines producing mAbs with high affinity for endo VII could be established. The mAbs were used for epitope mapping of the protein by using N-terminal, C-terminal and internal peptides of endo VII as antigens in enzyme-linked immunoabsorbant assays. Three classes of mAbs were distinguished as follows: (1) the predominant class with 13 mAbs recognized a C-terminal epitope located between amino acid residues 115 and 145; (2) a second class, represented by one mAb, recognized an epitope located at the N terminus between amino acid residues 16 and 65; (3) a third class, represented by one mAb, recognized an epitope built from nearly the entire native protein including amino acid residues from the C and N terminus of endo VII. The latter finding suggests close proximity of the two ends, which are provided apparently by the same monomer, since the mAb from class III does also react with a mutant protein deficient in dimerization. Internal sequences of endo VII between amino acid residues 78 and 145 did not react with any of the mAbs.


Asunto(s)
Bacteriófago T4/enzimología , Endodesoxirribonucleasas/inmunología , Mapeo Epitopo , Epítopos de Linfocito B/inmunología , Secuencia de Aminoácidos , Animales , Anticuerpos Monoclonales/clasificación , Anticuerpos Monoclonales/inmunología , Sitios de Unión de Anticuerpos , ADN/metabolismo , Endodesoxirribonucleasas/genética , Endodesoxirribonucleasas/metabolismo , Femenino , Hibridomas , Masculino , Ratones , Ratones Endogámicos BALB C , Ratones Endogámicos C57BL , Datos de Secuencia Molecular , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/inmunología , Células Tumorales Cultivadas , Zinc/metabolismo
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