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1.
Nature ; 602(7895): 106-111, 2022 02.
Artículo en Inglés | MEDLINE | ID: mdl-34883497

RESUMEN

Host genetic factors can confer resistance against malaria1, raising the question of whether this has led to evolutionary adaptation of parasite populations. Here we searched for association between candidate host and parasite genetic variants in 3,346 Gambian and Kenyan children with severe malaria caused by Plasmodium falciparum. We identified a strong association between sickle haemoglobin (HbS) in the host and three regions of the parasite genome, which is not explained by population structure or other covariates, and which is replicated in additional samples. The HbS-associated alleles include nonsynonymous variants in the gene for the acyl-CoA synthetase family member2-4 PfACS8 on chromosome 2, in a second region of chromosome 2, and in a region containing structural variation on chromosome 11. The alleles are in strong linkage disequilibrium and have frequencies that covary with the frequency of HbS across populations, in particular being much more common in Africa than other parts of the world. The estimated protective effect of HbS against severe malaria, as determined by comparison of cases with population controls, varies greatly according to the parasite genotype at these three loci. These findings open up a new avenue of enquiry into the biological and epidemiological significance of the HbS-associated polymorphisms in the parasite genome and the evolutionary forces that have led to their high frequency and strong linkage disequilibrium in African P. falciparum populations.


Asunto(s)
Genotipo , Hemoglobina Falciforme/genética , Adaptación al Huésped/genética , Malaria Falciparum/sangre , Malaria Falciparum/parasitología , Parásitos/genética , Plasmodium falciparum/genética , Alelos , Animales , Niño , Femenino , Gambia/epidemiología , Genes Protozoarios/genética , Humanos , Kenia/epidemiología , Desequilibrio de Ligamiento , Malaria Falciparum/epidemiología , Masculino , Polimorfismo Genético
2.
Nature ; 611(7936): 563-569, 2022 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-36352220

RESUMEN

Malaria infection involves an obligatory, yet clinically silent liver stage1,2. Hepatocytes operate in repeating units termed lobules, exhibiting heterogeneous gene expression patterns along the lobule axis3, but the effects of hepatocyte zonation on parasite development at the molecular level remain unknown. Here we combine single-cell RNA sequencing4 and single-molecule transcript imaging5 to characterize the host and parasite temporal expression programmes in a zonally controlled manner for the rodent malaria parasite Plasmodium berghei ANKA. We identify differences in parasite gene expression in distinct zones, including potentially co-adaptive programmes related to iron and fatty acid metabolism. We find that parasites develop more rapidly in the pericentral lobule zones and identify a subpopulation of periportally biased hepatocytes that harbour abortive infections, reduced levels of Plasmodium transcripts and parasitophorous vacuole breakdown. These 'abortive hepatocytes', which appear predominantly with high parasite inoculum, upregulate immune recruitment and key signalling programmes. Our study provides a resource for understanding the liver stage of Plasmodium infection at high spatial resolution and highlights the heterogeneous behaviour of both the parasite and the host hepatocyte.


Asunto(s)
Regulación de la Expresión Génica , Hepatocitos , Hígado , Malaria , Parásitos , Plasmodium berghei , Análisis de la Célula Individual , Animales , Hepatocitos/citología , Hepatocitos/inmunología , Hepatocitos/metabolismo , Hepatocitos/parasitología , Hígado/anatomía & histología , Hígado/citología , Hígado/inmunología , Hígado/parasitología , Malaria/genética , Malaria/inmunología , Malaria/parasitología , Parásitos/genética , Parásitos/inmunología , Parásitos/metabolismo , Plasmodium berghei/genética , Plasmodium berghei/inmunología , Plasmodium berghei/metabolismo , Imagen Individual de Molécula , Análisis de Secuencia de ARN , Hierro/metabolismo , Ácidos Grasos/metabolismo , Transcripción Genética , Genes Protozoarios/genética , Interacciones Huésped-Parásitos/genética , Interacciones Huésped-Parásitos/inmunología
3.
Nature ; 568(7750): 103-107, 2019 04.
Artículo en Inglés | MEDLINE | ID: mdl-30944491

RESUMEN

Apicomplexa is a group of obligate intracellular parasites that includes the causative agents of human diseases such as malaria and toxoplasmosis. Apicomplexans evolved from free-living phototrophic ancestors, but how this transition to parasitism occurred remains unknown. One potential clue lies in coral reefs, of which environmental DNA surveys have uncovered several lineages of uncharacterized basally branching apicomplexans1,2. Reef-building corals have a well-studied symbiotic relationship with photosynthetic Symbiodiniaceae dinoflagellates (for example, Symbiodinium3), but the identification of other key microbial symbionts of corals has proven to be challenging4,5. Here we use community surveys, genomics and microscopy analyses to identify an apicomplexan lineage-which we informally name 'corallicolids'-that was found at a high prevalence (over 80% of samples, 70% of genera) across all major groups of corals. Corallicolids were the second most abundant coral-associated microeukaryotes after the Symbiodiniaceae, and are therefore core members of the coral microbiome. In situ fluorescence and electron microscopy confirmed that corallicolids live intracellularly within the tissues of the coral gastric cavity, and that they possess apicomplexan ultrastructural features. We sequenced the genome of the corallicolid plastid, which lacked all genes for photosystem proteins; this indicates that corallicolids probably contain a non-photosynthetic plastid (an apicoplast6). However, the corallicolid plastid differs from all other known apicoplasts because it retains the four ancestral genes that are involved in chlorophyll biosynthesis. Corallicolids thus share characteristics with both their parasitic and their free-living relatives, which suggests that they are evolutionary intermediates and implies the existence of a unique biochemistry during the transition from phototrophy to parasitism.


Asunto(s)
Antozoos/parasitología , Apicomplexa/genética , Apicomplexa/metabolismo , Clorofila/biosíntesis , Genes Protozoarios/genética , Filogenia , Animales , Apicomplexa/citología , Arrecifes de Coral , Dinoflagelados/citología , Dinoflagelados/genética , Dinoflagelados/metabolismo , Genoma de Protozoos/genética , Fotosíntesis , Plastidios/genética , Simbiosis
4.
Genes Dev ; 30(24): 2724-2736, 2016 12 15.
Artículo en Inglés | MEDLINE | ID: mdl-28087716

RESUMEN

Ciliated protozoans perform extreme forms of programmed somatic DNA rearrangement during development. The model ciliate Tetrahymena thermophila removes 34% of its germline micronuclear genome from somatic macronuclei by excising thousands of internal eliminated sequences (IESs), a process that shares features with transposon excision. Indeed, piggyBac transposon-derived genes are necessary for genome-wide IES excision in both Tetrahymena (TPB2 [Tetrahymena piggyBac-like 2] and LIA5) and Paramecium tetraurelia (PiggyMac). T. thermophila has at least three other piggyBac-derived genes: TPB1, TPB6, and TPB7 Here, we show that TPB1 and TPB6 excise a small, distinct set of 12 unusual IESs that disrupt exons. TPB1-deficient cells complete mating, but their progeny exhibit slow growth, giant vacuoles, and osmotic shock sensitivity due to retention of an IES in the vacuolar gene DOP1 (Dopey domain-containing protein). Unlike most IESs, TPB1-dependent IESs have piggyBac-like terminal inverted motifs that are necessary for excision. Transposon-like excision mediated by TPB1 and TPB6 provides direct evidence for a transposon origin of not only IES excision machinery but also IESs themselves. Our study highlights a division of labor among ciliate piggyBac-derived genes, which carry out mutually exclusive categories of excision events mediated by either transposon-like features or RNA-directed heterochromatin.


Asunto(s)
Elementos Transponibles de ADN/genética , Reordenamiento Génico/genética , Genes Protozoarios/genética , Genoma de Protozoos/genética , Proteínas Protozoarias/metabolismo , Tetrahymena thermophila/genética , Regulación del Desarrollo de la Expresión Génica , Técnicas de Inactivación de Genes , Estadios del Ciclo de Vida , Proteínas Protozoarias/genética , Tetrahymena thermophila/crecimiento & desarrollo , Vacuolas/genética
5.
PLoS Pathog ; 16(12): e1009133, 2020 12.
Artículo en Inglés | MEDLINE | ID: mdl-33320907

RESUMEN

The rapid and aggressive spread of artemisinin-resistant Plasmodium falciparum carrying the C580Y mutation in the kelch13 gene is a growing threat to malaria elimination in Southeast Asia, but there is no evidence of their spread to other regions. We conducted cross-sectional surveys in 2016 and 2017 at two clinics in Wewak, Papua New Guinea (PNG) where we identified three infections caused by C580Y mutants among 239 genotyped clinical samples. One of these mutants exhibited the highest survival rate (6.8%) among all parasites surveyed in ring-stage survival assays (RSA) for artemisinin. Analyses of kelch13 flanking regions, and comparisons of deep sequencing data from 389 clinical samples from PNG, Indonesian Papua and Western Cambodia, suggested an independent origin of the Wewak C580Y mutation, showing that the mutants possess several distinctive genetic features. Identity by descent (IBD) showed that multiple portions of the mutants' genomes share a common origin with parasites found in Indonesian Papua, comprising several mutations within genes previously associated with drug resistance, such as mdr1, ferredoxin, atg18 and pnp. These findings suggest that a P. falciparum lineage circulating on the island of New Guinea has gradually acquired a complex ensemble of variants, including kelch13 C580Y, which have affected the parasites' drug sensitivity. This worrying development reinforces the need for increased surveillance of the evolving parasite populations on the island, to contain the spread of resistance.


Asunto(s)
Antiinfecciosos , Artemisininas , Resistencia a Medicamentos/genética , Genes Protozoarios/genética , Plasmodium falciparum/genética , Antiinfecciosos/uso terapéutico , Artemisininas/uso terapéutico , Estudios Transversales , Humanos , Malaria Falciparum/tratamiento farmacológico , Malaria Falciparum/parasitología , Mutación , Papúa Nueva Guinea
6.
J Immunol ; 204(6): 1562-1570, 2020 03 15.
Artículo en Inglés | MEDLINE | ID: mdl-31996457

RESUMEN

In this study, we generated a tkl1 deletion mutant in the Toxoplasma gondii type 1 RH (RHΔtkl1) strain and tested the protective efficacies of vaccination using RHΔtkl1 tachyzoites against acute, chronic, and congenital T. gondii infections in Kunming mice. Mice vaccinated with RHΔtkl1 mounted a strong humoral and cellular response as shown by elevated levels of anti-T. gondii-specific IgG, IL-2, IL-12, IFN-γ, and IL-10. All RHΔtkl1-vaccinated mice survived a lethal challenge with 1 × 103 tachyzoites of type 1 RH or ToxoDB#9 (PYS or TgC7) strain as well as 100 cysts or oocysts of Prugniuad strain. All mock-vaccinated plus infected mice have died. Vaccination also protected against cyst- or oocyst-caused chronic infection, reduced vertical transmission caused by oocysts, increased litter size, and maintained body weight of pups born to dams challenged with 10 oocysts on day 5 of gestation. In contrast, all mock-vaccinated plus oocysts-infected dams had aborted, and no fetus has survived. Vaccinated dams remained healthy postinfection, and their brain cyst burden was significantly reduced compared with mock-vaccinated dams infected with oocysts. In vivo depletion of CD4+ T cells, CD8+ T cells, and B cells revealed that CD8+ T cells are involved in the protection of mice against T. gondii infection. Additionally, adoptive transfer of CD8+ T cells from RHΔtkl1-vaccinated mice significantly enhanced the survival of naive mice infected with the pathogenic strain. Together, these data reaffirm the importance of CD8+ T cell responses in future vaccine design for toxoplasmosis and present T. gondii tkl1 gene as a promising vaccine candidate.


Asunto(s)
Linfocitos T CD8-positivos/inmunología , Vacunas Antiprotozoos/administración & dosificación , Toxoplasma/inmunología , Toxoplasmosis Animal/prevención & control , Toxoplasmosis Congénita/prevención & control , Enfermedad Aguda/terapia , Traslado Adoptivo , Animales , Linfocitos T CD8-positivos/trasplante , Enfermedad Crónica/prevención & control , Modelos Animales de Enfermedad , Femenino , Genes Protozoarios/genética , Genes Protozoarios/inmunología , Humanos , Transmisión Vertical de Enfermedad Infecciosa/prevención & control , Ganado/parasitología , Masculino , Ratones , Proteínas Protozoarias/genética , Proteínas Protozoarias/inmunología , Vacunas Antiprotozoos/genética , Vacunas Antiprotozoos/inmunología , Eliminación de Secuencia , Toxoplasma/genética , Toxoplasmosis Animal/inmunología , Toxoplasmosis Animal/parasitología , Toxoplasmosis Animal/transmisión , Toxoplasmosis Congénita/inmunología , Toxoplasmosis Congénita/parasitología , Toxoplasmosis Congénita/transmisión , Virulencia/genética , Factores de Virulencia/genética , Factores de Virulencia/inmunología
7.
Proc Natl Acad Sci U S A ; 116(1): 255-260, 2019 01 02.
Artículo en Inglés | MEDLINE | ID: mdl-30584102

RESUMEN

Genetic manipulation remains a major obstacle for understanding the functional genomics of the deadliest malaria parasite Plasmodium falciparum Although the CRISPR/Cas9 (clustered regularly interspaced short palindromic repeat/CRISPR-associated protein 9) system has been successfully applied to introduce permanent changes in the parasite genome, its use is still limited. Here we show that fusing different epigenetic effector domains to a Cas9 null mutant efficiently and specifically reprograms the expression of target genes in P. falciparum By precisely writing and erasing histone acetylation at the transcription start site regions of the invasion-related genes reticulocyte binding protein homolog 4 (rh4) and erythrocyte binding protein 175 (eba-175), respectively, we achieved significant activation of rh4 and repression of eba-175, leading to the switch of the parasite invasion pathways into human erythrocytes. By using the epigenetic knockdown system, we have also characterized the effects of PfSET1, previously identified as an essential gene, on expression of mainly trophozoite- and schizont-specific genes, and therefore regulation of the growth of the mature forms of P. falciparum This epigenetic CRISPR/dCas9 system provides a powerful approach for regulating gene expression at the transcriptional level in P. falciparum.


Asunto(s)
Sistemas CRISPR-Cas , Epigénesis Genética , Edición Génica/métodos , Plasmodium falciparum/genética , Proteína 9 Asociada a CRISPR/genética , Eritrocitos/parasitología , Técnicas de Silenciamiento del Gen , Genes Protozoarios/genética , Histona Acetiltransferasas/genética , Histona Desacetilasas/genética , Humanos , Malaria Falciparum/parasitología , Plasmodium falciparum/fisiología , Proteínas Recombinantes
8.
Mol Plant Microbe Interact ; 34(2): 157-167, 2021 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-33103962

RESUMEN

Diseases caused by the notorious Phytophthora spp. result in enormous economic losses to crops and forests. Increasing evidence suggests that small open reading frame-encoded polypeptides (SEPs) participate in environmental responses of animals, plants, and fungi. However, it remains largely unknown whether Phytophthora pathogens produce SEPs. Here, we systematically predicted and identified 96 SEP candidates in P. capsici. Among them, three may induce stable cell death in Nicotiana benthamiana. Phytophthora-specific and conserved SEP1 facilitated P. capsici infection. PcSEP1-induced cell death is BAK1 and SOBIR1 independent and is correlated with its virulence function. Finally, PcSEP1 may be targeted to the apoplast for carrying out its functions, for which the C terminus is indispensable. Together, our results demonstrated that SEP1 is a new virulence factor, and previously unknown SEPs may act as effector proteins in Phytophthora pathogens.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.


Asunto(s)
Genes Protozoarios , Phytophthora , Factores de Virulencia , Genes Protozoarios/genética , Phytophthora/genética , Phytophthora/patogenicidad , Enfermedades de las Plantas/parasitología , Nicotiana/parasitología , Factores de Virulencia/genética
9.
Korean J Parasitol ; 59(1): 67-75, 2021 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-33684989

RESUMEN

Legionella pneumophila is an opportunistic pathogen that survives and proliferates within protists such as Acanthamoeba spp. in environment. However, intracellular pathogenic endosymbiosis and its implications within Acanthamoeba spp. remain poorly understood. In this study, RNA sequencing analysis was used to investigate transcriptional changes in A. castellanii in response to L. pneumophila infection. Based on RNA sequencing data, we identified 1,211 upregulated genes and 1,131 downregulated genes in A. castellanii infected with L. pneumophila for 12 hr. After 24 hr, 1,321 upregulated genes and 1,379 downregulated genes were identified. Gene ontology (GO) analysis revealed that L. pneumophila endosymbiosis enhanced hydrolase activity, catalytic activity, and DNA binding while reducing oxidoreductase activity in the molecular function (MF) domain. In particular, multiple genes associated with the GO term 'integral component of membrane' were downregulated during endosymbiosis. The endosymbiont also induced differential expression of various methyltransferases and acetyltransferases in A. castellanii. Findings herein are may significantly contribute to understanding endosymbiosis of L. pneumophila within A. castellanii.


Asunto(s)
Acanthamoeba castellanii/genética , Acanthamoeba castellanii/microbiología , Genes Protozoarios/genética , Legionella pneumophila/fisiología , Simbiosis/genética , Transcriptoma/genética , Acanthamoeba castellanii/enzimología , Acetiltransferasas/genética , Acetiltransferasas/metabolismo , Catálisis , Ontología de Genes , Hidrolasas/metabolismo , Legionella pneumophila/patogenicidad , Metiltransferasas/genética , Metiltransferasas/metabolismo , Oxidorreductasas/metabolismo , Análisis de Secuencia de ARN , Transcripción Genética
10.
Korean J Parasitol ; 59(1): 15-22, 2021 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-33684983

RESUMEN

Artemisinin resistance (ART) has been confirmed in Greater Mekong Sub-region countries. Currently, C580Y mutation on Pfkelch13 gene is known as the molecular marker for the detection of ART. Rapid and accurate detection of ART in field study is essential to guide malaria containment and elimination interventions. A simple method for collection of malaria-infected blood is to spot the blood on filter paper and is fast and easy for transportation and storage in the field study. This study aims to evaluate LAMP-SNP assay for C580Y mutation detection by introducing an extra mismatched nucleotide at the 3' end of the FIP primer. The LAMP-SNP assay was performed in a water bath held at a temperature of 56°C for 45 min. LAMP-SNP products were interpreted by both gel-electrophoresis and HNB-visualized changes in color. The method was then tested with 120 P. falciparum DNA from dried blood spot samples. In comparing the LAMP-SNP assay results with those from DNA sequencing of the clinical samples, the 2 results fully agreed to detect C580Y. The sensitivity and specificity of the LAMP-SNP assay showed 100%. There were no cross-reactions with other Plasmodium species and other Pfkelch13 mutations. The LAMP-SNP assay performed in this study was rapid, reliable, and useful in detecting artemisinin resistance in the field study.


Asunto(s)
Sangre/parasitología , Análisis Mutacional de ADN/métodos , Genes Protozoarios/genética , Malaria Falciparum/parasitología , Técnicas de Diagnóstico Molecular/métodos , Mutación , Técnicas de Amplificación de Ácido Nucleico/métodos , Plasmodium falciparum/genética , Polimorfismo de Nucleótido Simple/genética , Antimaláricos/farmacología , Artemisininas/farmacología , Recolección de Muestras de Sangre/métodos , ADN Protozoario/genética , Resistencia a Medicamentos/genética , Humanos , Plasmodium falciparum/efectos de los fármacos
11.
Arch Microbiol ; 202(10): 2689-2695, 2020 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-32725599

RESUMEN

Depression disorder is one of the most common psychological recognitions that characterized by sadness, low self-confidence, and disinterest in every activity. Considering evidence showing the effects of toxoplasmosis on the psychological disease, this study conducted to investigate the serological and molecular aspects of Toxoplasma gondii infection among patients with depression. In this study, after selecting the patients with depression and control groups under the supervision of a psychologist, the blood samples were collected and the serum samples and buffy coat were separated. The specific anti-Toxoplasma IgG antibodies in serum samples were evaluated using the commercial ELISA kit. Then the desired region of the Toxoplasma B1 gene was amplified using the specific primers. To confirm the specificity of primers to amplify the B1 gene of Toxoplasma, the extracted PCR product was sequenced. The overall prevalence of toxoplasmosis in patients with depression was 59.8 and 60.19% by ELISA and PCR, respectively. In the control group, the prevalence of Toxoplasma was 56.3 and 40.2% by serology and PCR. There was a significant correlation between the prevalence of toxoplasmosis and depression. Moreover, a significant difference was found between the variables of age, sex, kind of nutrition, level of education and toxoplasmosis among the two cases and control groups. The higher prevalence of Toxoplasma infection among patients with depression compared with the control group indicates the probable impact of this parasite on depression and exacerbates its symptoms, which requires special attention of specialist physicians and patient's relatives.


Asunto(s)
Anticuerpos Antiprotozoarios/sangre , Depresión/complicaciones , Depresión/parasitología , Toxoplasma , Toxoplasmosis/complicaciones , Toxoplasmosis/epidemiología , Anticuerpos Antiprotozoarios/genética , Estudios de Casos y Controles , Ensayo de Inmunoadsorción Enzimática , Femenino , Genes Protozoarios/genética , Humanos , Inmunoglobulina G/sangre , Inmunoglobulina M/sangre , Masculino , Reacción en Cadena de la Polimerasa , Prevalencia , Factores de Riesgo , Toxoplasma/genética , Toxoplasma/inmunología , Toxoplasmosis/inmunología
12.
PLoS Comput Biol ; 15(9): e1007329, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31509524

RESUMEN

Empirical evidence suggests that the malaria parasite Plasmodium falciparum employs a broad range of mechanisms to regulate gene transcription throughout the organism's complex life cycle. To better understand this regulatory machinery, we assembled a rich collection of genomic and epigenomic data sets, including information about transcription factor (TF) binding motifs, patterns of covalent histone modifications, nucleosome occupancy, GC content, and global 3D genome architecture. We used these data to train machine learning models to discriminate between high-expression and low-expression genes, focusing on three distinct stages of the red blood cell phase of the Plasmodium life cycle. Our results highlight the importance of histone modifications and 3D chromatin architecture in Plasmodium transcriptional regulation and suggest that AP2 transcription factors may play a limited regulatory role, perhaps operating in conjunction with epigenetic factors.


Asunto(s)
Biología Computacional/métodos , Código de Histonas/genética , Modelos Estadísticos , Nucleosomas/genética , Plasmodium falciparum/genética , Eritrocitos/parasitología , Perfilación de la Expresión Génica , Regulación de la Expresión Génica/genética , Genes Protozoarios/genética , Humanos , Estadios del Ciclo de Vida/genética , Aprendizaje Automático , Malaria Falciparum , Modelos Biológicos , Plasmodium falciparum/citología , Plasmodium falciparum/patogenicidad
13.
Malar J ; 19(1): 176, 2020 May 07.
Artículo en Inglés | MEDLINE | ID: mdl-32380999

RESUMEN

BACKGROUND: Malaria incidence has reached staggering numbers in Venezuela. Commonly, Bolívar State accounted for approximately 70% of the country cases every year. Most cases cluster in the Sifontes municipality, a region characterized by an extractive economy, including gold mining. An increase in migration to Sifontes, driven by gold mining, fueled a malaria spillover to the rest of the country and the region. Here samples collected in 2018 were compared with a previous study of 2003/2004 to describe changes in the parasites population structures and the frequency of point mutations linked to anti-malarial drugs. METHODS: A total of 88 Plasmodium falciparum and 94 Plasmodium vivax isolates were collected in 2018 and compared with samples from 2003/2004 (106 P. falciparum and 104 P. vivax). For P. falciparum, mutations linked to drug resistance (Pfdhfr, Pfdhps, and Pfcrt) and the Pfk13 gene associated with artemisinin delayed parasite clearance, were analysed. To estimate the multiplicity of infection (MOI), and perform P. falciparum and P. vivax population genetic analyses, the parasites were genotyped by using eight standardized microsatellite loci. RESULTS: The P. falciparum parasites are still harbouring drug-resistant mutations in Pfdhfr, Pfdhps, and Pfcrt. However, there was a decrease in the frequency of highly resistant Pfdhps alleles. Mutations associated with artemisinin delayed parasite clearance in the Pfk13 gene were not found. Consistent with the increase in transmission, polyclonal infections raised from 1.9% in 2003/2004 to 39% in 2018 in P. falciparum and from 16.3 to 68% in P. vivax. There is also a decrease in linkage disequilibrium. Bayesian clustering yields two populations linked to the time of sampling, showing that the parasite populations temporarily changed. However, the samples from 2003/2004 and 2018 have several alleles per locus in common without sharing multi-locus genotypes. CONCLUSIONS: The frequency of mutations linked with drug resistance in P. falciparum shows only changes in Pfdhps. Observations presented here are consistent with an increase in transmission from the previously circulating parasites. Following populations longitudinally, using molecular surveillance, provides valuable information in cases such as Venezuela with a fluid malaria situation that is affecting the regional goals toward elimination.


Asunto(s)
Resistencia a Medicamentos/genética , Genes Protozoarios/genética , Malaria Falciparum/transmisión , Malaria Vivax/transmisión , Plasmodium falciparum/genética , Plasmodium vivax/genética , Antimaláricos/farmacología , Malaria Falciparum/epidemiología , Malaria Falciparum/parasitología , Malaria Vivax/epidemiología , Malaria Vivax/parasitología , Repeticiones de Microsatélite/genética , Mutación Puntual , Prevalencia , Venezuela/epidemiología
14.
Nature ; 507(7491): 248-52, 2014 Mar 13.
Artículo en Inglés | MEDLINE | ID: mdl-24572369

RESUMEN

The life cycles of many parasites involve transitions between disparate host species, requiring these parasites to go through multiple developmental stages adapted to each of these specialized niches. Transmission of malaria parasites (Plasmodium spp.) from humans to the mosquito vector requires differentiation from asexual stages replicating within red blood cells into non-dividing male and female gametocytes. Although gametocytes were first described in 1880, our understanding of the molecular mechanisms involved in commitment to gametocyte formation is extremely limited, and disrupting this critical developmental transition remains a long-standing goal. Here we show that expression levels of the DNA-binding protein PfAP2-G correlate strongly with levels of gametocyte formation. Using independent forward and reverse genetics approaches, we demonstrate that PfAP2-G function is essential for parasite sexual differentiation. By combining genome-wide PfAP2-G cognate motif occurrence with global transcriptional changes resulting from PfAP2-G ablation, we identify early gametocyte genes as probable targets of PfAP2-G and show that their regulation by PfAP2-G is critical for their wild-type level expression. In the asexual blood-stage parasites pfap2-g appears to be among a set of epigenetically silenced loci prone to spontaneous activation. Stochastic activation presents a simple mechanism for a low baseline of gametocyte production. Overall, these findings identify PfAP2-G as a master regulator of sexual-stage development in malaria parasites and mark the first discovery of a transcriptional switch controlling a differentiation decision in protozoan parasites.


Asunto(s)
Regulación de la Expresión Génica/genética , Células Germinativas/crecimiento & desarrollo , Malaria/parasitología , Parásitos/fisiología , Plasmodium falciparum/genética , Desarrollo Sexual/genética , Transcripción Genética/genética , Animales , Proteínas de Unión al ADN/deficiencia , Proteínas de Unión al ADN/genética , Proteínas de Unión al ADN/metabolismo , Femenino , Silenciador del Gen , Genes Protozoarios/genética , Genoma de Protozoos/genética , Células Germinativas/citología , Células Germinativas/metabolismo , Masculino , Parásitos/citología , Parásitos/genética , Plasmodium falciparum/citología , Plasmodium falciparum/fisiología , Proteínas Protozoarias/genética , Proteínas Protozoarias/metabolismo , Reproducción Asexuada , Diferenciación Sexual/genética
15.
Nature ; 513(7518): 431-5, 2014 Sep 18.
Artículo en Inglés | MEDLINE | ID: mdl-25043062

RESUMEN

Antigenic variation of the Plasmodium falciparum multicopy var gene family enables parasite evasion of immune destruction by host antibodies. Expression of a particular var subgroup, termed upsA, is linked to the obstruction of blood vessels in the brain and to the pathogenesis of human cerebral malaria. The mechanism determining upsA activation remains unknown. Here we show that an entirely new type of gene silencing mechanism involving an exonuclease-mediated degradation of nascent RNA controls the silencing of genes linked to severe malaria. We identify a novel chromatin-associated exoribonuclease, termed PfRNase II, that controls the silencing of upsA var genes by marking their transcription start site and intron-promoter regions leading to short-lived cryptic RNA. Parasites carrying a deficient PfRNase II gene produce full-length upsA var transcripts and intron-derived antisense long non-coding RNA. The presence of stable upsA var transcripts overcomes monoallelic expression, resulting in the simultaneous expression of both upsA and upsC type PfEMP1 proteins on the surface of individual infected red blood cells. In addition, we observe an inverse relationship between transcript levels of PfRNase II and upsA-type var genes in parasites from severe malaria patients, implying a crucial role of PfRNase II in severe malaria. Our results uncover a previously unknown type of post-transcriptional gene silencing mechanism in malaria parasites with repercussions for other organisms. Additionally, the identification of RNase II as a parasite protein controlling the expression of virulence genes involved in pathogenesis in patients with severe malaria may provide new strategies for reducing malaria mortality.


Asunto(s)
Exorribonucleasas/metabolismo , Silenciador del Gen , Genes Protozoarios/genética , Malaria Cerebral/parasitología , Plasmodium falciparum/enzimología , Plasmodium falciparum/genética , ARN Protozoario/metabolismo , Alelos , Variación Antigénica/genética , Cromatina/enzimología , Regulación hacia Abajo/genética , Eritrocitos/parasitología , Exorribonucleasas/deficiencia , Exorribonucleasas/genética , Humanos , Intrones/genética , Malaria Falciparum/parasitología , Plasmodium falciparum/patogenicidad , Regiones Promotoras Genéticas/genética , Proteínas Protozoarias/genética , ARN Mensajero/genética , ARN Mensajero/metabolismo , ARN Protozoario/genética , ARN no Traducido/genética , ARN no Traducido/metabolismo , Sitio de Iniciación de la Transcripción , Virulencia/genética , Factores de Virulencia/genética
16.
PLoS Genet ; 13(2): e1006619, 2017 02.
Artículo en Inglés | MEDLINE | ID: mdl-28245292

RESUMEN

RNA editing is a rare post-transcriptional event that provides cells with an additional level of gene expression regulation. It has been implicated in various processes including adaptation, viral defence and RNA interference; however, its potential role as a mechanism in acclimatization has just recently been recognised. Here, we show that RNA editing occurs in 1.6% of all nuclear-encoded genes of Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals. All base-substitution edit types were present, and statistically significant motifs were associated with three edit types. Strikingly, a subset of genes exhibited condition-specific editing patterns in response to different stressors that resulted in significant increases of non-synonymous changes. We posit that this previously unrecognised mechanism extends this organism's capability to respond to stress beyond what is encoded by the genome. This in turn may provide further acclimatization capacity to these organisms, and by extension, their coral hosts.


Asunto(s)
Antozoos/parasitología , Dinoflagelados/genética , Dinoflagelados/fisiología , Edición de ARN , Simbiosis , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Núcleo Celular/genética , Arrecifes de Coral , Perfilación de la Expresión Génica/métodos , Ontología de Genes , Genes Protozoarios/genética , Interacciones Huésped-Parásitos , Proteínas Protozoarias/genética , Homología de Secuencia de Ácido Nucleico , Temperatura
17.
Parasitol Res ; 119(10): 3327-3338, 2020 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-32789533

RESUMEN

The evolutionary history of Acanthamoeba has been substantially resolved by the 18S rDNA phylogeny which made it possible to delimit the main lines associated with some classical species. Some of them have proven to be polyphyletic, but the inappropriate use of treating under the same names unrelated strains persists. In this study, phylogenies based on the complete genes of nuclear and mitochondrial rDNA were compared, in order to verify the congruence of the different lines. Various groups can thus be identified, some of which associated with the type strains of given species. Recognizing them only by their species names would significantly reduce the current confusion, in addition to logically following basic taxonomic rules. In this manner, the well-known polyphyletic taxa A. castellanii and A. polyphaga, are restricted to the two lines specified by their type strains, while other widely used strains like Neff and Linc-AP1 that are often confused with the previous ones, can be assigned to their own lines. New species are potentially present in other groups and additional efforts are needed to delimit them.


Asunto(s)
Acanthamoeba/clasificación , Filogenia , Acanthamoeba/genética , Animales , ADN Mitocondrial/genética , ADN Ribosómico/genética , Genes Protozoarios/genética , Genotipo
18.
Parasitol Res ; 119(7): 2299-2307, 2020 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-32476060

RESUMEN

In the intermediate hosts, tachyzoites of T. gondii predominate in the acute stage while bradyzoites persist inside tissue cysts with the potential for reactivation. The two stages exhibit different metabolic and antigenic characters. The present study aimed to investigate temporal expression of Toxoplasma SAG1 and BAG1 genes in the brain tissue and the coincident parasitological and histopathological findings in mice models of toxoplasmosis. The study included group A: mice infected with RH strain and sacrificed 7 days post-infection (p.i.); group B: mice infected with RH strain and treated with sulfamethoxazole-trimethoprim (30 mg/kg/day and 150 mg/kg/day respectively) 24 h p.i. until sacrificed at days 5, 10, or 20 post-treatment; group C: mice infected with ME-49 strain and sacrificed at days 7, 27, 47, or 67 p.i; and group D: mice infected with ME-49 strain and received dexamethasone daily starting at day 68 p.i. and scarified at days 6 or 10 post-treatment. All mice were inspected daily for abnormal physical signs. Peritoneal exudate and brain homogenate were examined for detection of Toxoplasma stages. Brain sections were examined histopathologically. SAG1 and BAG1 gene expression was evaluated using reverse transcription real-time polymerase chain reaction and the ΔΔCt method. Results revealed that marked BAG1 upregulation is consistent with detection of Toxoplasma cysts and degenerative changes while predominance of tachyzoites and inflammatory infiltrate is compatible with SAG1 upregulation. The study sheds light on the potential for using stage-specific gene expression pattern as markers for evaluation of toxoplasmosis disease progression in clinical settings.


Asunto(s)
Regulación del Desarrollo de la Expresión Génica , Estadios del Ciclo de Vida/genética , Toxoplasma/genética , Toxoplasmosis Animal/patología , Toxoplasmosis Animal/parasitología , Animales , Encéfalo/parasitología , Encéfalo/patología , Femenino , Genes Protozoarios/genética , Ratones , Enquistamiento de Parásito/genética , Toxoplasma/crecimiento & desarrollo
19.
Parasitol Res ; 119(11): 3803-3815, 2020 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-33006041

RESUMEN

Trypanosoma cruzi is the etiological agent of Chagas disease, whose clinical outcome ranges from asymptomatic individuals to chronic fatal megasyndromes. Despite being central to pathogenesis, the regulation of parasite virulence factors' expression remains largely unknown. In this work, the relative expression of several parasite virulence factors between two TcI strains (Ninoa, low virulence and Qro, high virulence) was assessed by qRT-PCR of total and of polysome-associated mRNA, as well as by western blots. Trypomastigotes were also incubated with specific anti-sense morpholino oligonucleotides to block the translation of a selected virulence factor, calreticulin, in both strains. Ninoa trypomastigotes showed significantly lower levels of trypomastigote-decay acceleration factor, complement regulatory protein, complement C2 receptor inhibitor trispanning, and glycoproteins 82 and 90 mRNAs compared with Qro. There was a significantly lower recruitment of complement regulatory protein and complement C2 receptor inhibitor trispanning mRNAs to polysomes and higher recruitment of MASP mRNA to monosomes in Ninoa strain. Calreticulin mRNA displayed both a higher total mRNA level and recruitment to translationally active polysomes in the Ninoa strain (low virulence) than in the Qro strain (high virulence). When calreticulin was downregulated by ≈ 50% by anti-sense morpholino oligonucleotides, a significant decrease of parasite invasion in mammalian cells was found in both strains. Calreticulin downregulation, however, only increased significantly the activation of the complement system by Ninoa trypomastigotes. These results suggest a role for the regulation of virulence factors' gene expression in the differential virulence among T. cruzi strains. Furthermore, a possible function of calreticulin in parasite invasion not related to its binding to complement factors is shown.


Asunto(s)
Regulación de la Expresión Génica , Genes Protozoarios/genética , Trypanosoma cruzi/genética , Trypanosoma cruzi/patogenicidad , Factores de Virulencia/genética , Virulencia/genética , Animales , Western Blotting , Calreticulina/genética , Enfermedad de Chagas/parasitología , Chlorocebus aethiops , Cobayas , ARN Mensajero/metabolismo , Células Vero
20.
Parasitol Res ; 119(7): 2363-2367, 2020 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-32500369

RESUMEN

Rhipicephalus appendiculatus is the major tick vector of Theileria parva, an apicomplexan protozoan parasite that causes the most economically important and lethal disease of cattle in East and central Africa. The African cape buffalo (Syncerus caffer) is the major wildlife host of T. parva from southern Uganda and Kenya to southern Africa. We show herein that R. appendiculatus appears to be absent from the two largest national parks in northern Uganda. Syncerus caffer is common in both of these national parks, specifically Murchison falls (MFNP) and Kidepo Valley (KVNP). We re-confirmed the previously reported absence of T. parva in buffalo sampled in the two northern parks based on RLB data using a nested PCR based on the T. parva p104 gene. By contrast, T. parva-infected R. appendiculatus ticks and parasite-infected buffalo were present in Lake Mburo (LMNP) in South central Uganda. This suggests that the distribution of R. appendiculatus, which is predicted to include the higher rainfall regions of northern Uganda, may be limited by additional, as yet unknown factors.


Asunto(s)
Vectores Arácnidos/parasitología , Búfalos/parasitología , Rhipicephalus/parasitología , Theileria parva/fisiología , Animales , Animales Salvajes/parasitología , ADN Protozoario/genética , Ecosistema , Genes Protozoarios/genética , Parques Recreativos , Theileria parva/genética , Theileriosis/parasitología , Theileriosis/transmisión , Uganda/epidemiología
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