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1.
EMBO J ; 37(14)2018 07 13.
Artículo en Inglés | MEDLINE | ID: mdl-29871888

RESUMEN

Mobilization of transposable elements (TEs) in plants has been recognized as a driving force of evolution and adaptation, in particular by providing genes with regulatory modules that impact their transcription. In this study, we employed an ATCOPIA93 long-terminal repeat (LTR) promoter-GUS fusion to show that this retrotransposon behaves like an immune-responsive gene during pathogen defense in Arabidopsis We also showed that the endogenous ATCOPIA93 copy "EVD", which is activated in the presence of bacterial stress, is negatively regulated by both DNA methylation and polycomb-mediated silencing, a mode of repression typically found at protein-coding and microRNA genes. Interestingly, an ATCOPIA93-derived soloLTR is located upstream of the disease resistance gene RPP4 and is devoid of DNA methylation and H3K27m3 marks. Through loss-of-function experiments, we demonstrate that this soloLTR is required for the proper expression of RPP4 during plant defense, thus linking the responsiveness of ATCOPIA93 to biotic stress and the co-option of its LTR for plant immunity.


Asunto(s)
Arabidopsis/genética , Arabidopsis/inmunología , Regulación de la Expresión Génica de las Plantas , Enfermedades de las Plantas/inmunología , Retroelementos , Proteínas de Arabidopsis/biosíntesis , Fusión Artificial Génica , Genes Reporteros , Glucuronidasa/análisis , Glucuronidasa/genética
2.
Glycobiology ; 31(3): 266-274, 2021 04 01.
Artículo en Inglés | MEDLINE | ID: mdl-32810871

RESUMEN

Paenibacillus sp. 32352 is a soil-dwelling bacterium capable of producing an enzyme, Pn3Pase that degrades the capsular polysaccharide of Streptococcus pneumoniae serotype 3 (Pn3P). Recent reports on Pn3Pase have demonstrated its initial characterization and potential for protection against highly virulent S. pneumoniae serotype 3 infections. Initial experiments revealed this enzyme functions as an exo-ß1,4-glucuronidase cleaving the ß(1,4) linkage between glucuronic acid and glucose. However, the catalytic mechanism of this enzyme is still unknown. Here, we report the detailed biochemical analysis of Pn3Pase. Pn3Pase shows no significant sequence similarity to known glycoside hydrolase (GH) families, thus this novel enzyme establishes a new carbohydrate-active enzyme (CAZy) GH family. Site-directed mutagenesis studies revealed two catalytic residues along with truncation mutants defining essential domains for function. Pn3Pase and its mutants were screened for activity, substrate binding and kinetics. Additionally, nuclear magnetic resonance spectroscopy analysis revealed that Pn3Pase acts through a retaining mechanism. This study exhibits Pn3Pase activity at the structural and mechanistic level to establish the new CAZy GH family GH169 belonging to the large GH-A clan. This study will also serve toward generating Pn3Pase derivatives with optimal activity and pharmacokinetics aiding in the use of Pn3Pase as a novel therapeutic approach against type 3 S. pneumoniae infections.


Asunto(s)
Glucuronidasa/metabolismo , Glicósido Hidrolasas/química , Paenibacillus/enzimología , Glucuronidasa/análisis , Glicósido Hidrolasas/metabolismo , Polisacáridos/química , Polisacáridos/metabolismo , Streptococcus pneumoniae/química , Streptococcus pneumoniae/metabolismo , Especificidad por Sustrato
3.
FASEB J ; 34(9): 12436-12449, 2020 09.
Artículo en Inglés | MEDLINE | ID: mdl-32729975

RESUMEN

Currently, no treatment exists to improve semen quality in most infertile men. Here, we demonstrate systemic and direct effects of Fibroblast growth factor 23 (FGF23) and Klotho, which normally regulate vitamin D and mineral homeostasis, on testicular function. Direct effects are plausible because KLOTHO is expressed in both germ cells and spermatozoa and forms with FGFR1 a specific receptor for the bone-derived hormone FGF23. Treatment with FGF23 increased testicular weight in wild-type mice, while mice with global loss of either FGF23 or Klotho had low testicular weight, reduced sperm count, and sperm motility. Mice with germ cell-specific Klotho (gcKL) deficiency neither had a change in sperm count nor sperm motility. However, a tendency toward fewer pregnancies was detected, and significantly fewer Klotho heterozygous pups originated from gcKL knockdown mice than would be expected by mendelian inheritance. Moreover, gcKL mice had a molecular phenotype with higher testicular expression of Slc34a2 and Trpv5 than wild-type littermates, which suggests a regulatory role for testicular phosphate and calcium homeostasis. KLOTHO and FGFR1 were also expressed in human germ cells and spermatozoa, and FGF23 treatment augmented the calcium response to progesterone in human spermatozoa. Moreover, cross-sectional data revealed that infertile men with the highest serum Klotho levels had significantly higher serum Inhibin B and total sperm count than men with the lowest serum Klotho concentrations. In conclusion, this translational study suggests that FGF23 and Klotho influence gonadal function and testicular mineral ion homeostasis both directly and indirectly through systemic changes in vitamin D and mineral homeostasis.


Asunto(s)
Factores de Crecimiento de Fibroblastos/fisiología , Glucuronidasa/fisiología , Testículo/fisiología , Animales , Calcio/metabolismo , Fertilidad , Factor-23 de Crecimiento de Fibroblastos , Glucuronidasa/análisis , Homeostasis , Proteínas Klotho , Masculino , Ratones , Ratones Endogámicos C57BL , Fosfatos/metabolismo , Receptor Tipo 1 de Factor de Crecimiento de Fibroblastos/análisis , Motilidad Espermática , Vitamina D/metabolismo
4.
Mod Pathol ; 33(5): 858-870, 2020 05.
Artículo en Inglés | MEDLINE | ID: mdl-31792355

RESUMEN

Phosphaturic mesenchymal tumors (PMT) are tumors that cause hypophosphatemia/osteomalacia chiefly by secreting FGF23. We have identified FN1-FGFR1/FGF1 fusion genes in nearly half of PMT, suggesting a central role of FGFR1 pathways in the pathogenesis of PMT. Tumorigenic drivers are unknown for tumors where previous study detected neither fusion, including many in bone, where FISH failed because of tissue decalcification. To identify alternative fusions in PMT without known fusions, as well as to validate the positive FISH results and characterize the fusion junctions, 34 PMT were studied, including 12 with known FN1-FGFR1 fusion by FISH (Group A), 2 with FN1-FGF1 (B), 12 with neither fusion (C), and 8 with previous acid-based decalcification and hence unknown fusion status (D). In total, 23 archival samples were subjected to anchored multiplex PCR-based RNA-sequencing (AMP-seq) with primers targeting FN1, genes encoding the FGF/FGFR families, and KL (α-Klotho); five Group C cases were also studied with whole-transcriptomic and exome-captured RNA sequencing, respectively. The AMP-seq results were consistent with previous FISH and/or transcriptomic sequencing data, except in one old Group A sample. One case had a novel FGFR1 exon 9 breakpoint, confirmed by genomic DNA sequencing. One Group D bone tumor was found to harbor FN1-FGF1. All 3 RNA-sequencing platforms failed to identify convincing fusion genes in Group C (N = 10), which instead expressed significantly higher levels of either KL or KLB. This result was further confirmed with KL and KLB RNA CISH semi-quantification (RNAscope). Our results demonstrated the utility of AMP-seq, which was compromised by decalcification and prolonged archiving. Of potential importance, fusion-negative PMT frequently overexpressed α-Klotho (or instead ß-Klotho less commonly), whose role as an obligatory co-receptor for FGF23-FGFR1 binding suggests its aberrant expression in osteocytes/osteoblasts might result in an FGF23-FGFR1 autocrine loop that in turn drives the overexpression of FGF23 and tumorigenesis through activated FGFR pathways.


Asunto(s)
Neoplasias Óseas/patología , Glucuronidasa/biosíntesis , Proteínas de la Membrana/biosíntesis , Neoplasias de los Tejidos Blandos/patología , Adulto , Anciano , Biomarcadores de Tumor/análisis , Biomarcadores de Tumor/metabolismo , Neoplasias Óseas/metabolismo , Carcinogénesis/metabolismo , Femenino , Factor-23 de Crecimiento de Fibroblastos , Glucuronidasa/análisis , Humanos , Proteínas Klotho , Masculino , Persona de Mediana Edad , Neoplasias de los Tejidos Blandos/metabolismo
5.
Int J Mol Sci ; 22(1)2020 Dec 22.
Artículo en Inglés | MEDLINE | ID: mdl-33375198

RESUMEN

The prevalence of chronic kidney disease (CKD) is increasing worldwide, and the mortality rate continues to be unacceptably high. The biomarkers currently used in clinical practice are considered relevant when there is already significant renal impairment compromising the early use of potentially successful therapeutic interventions. More sensitive and specific biomarkers to detect CKD earlier on and improve patients' prognoses are an important unmet medical need. The aim of this review is to summarize the recent literature on new promising early CKD biomarkers of renal function, tubular lesions, endothelial dysfunction and inflammation, and on the auspicious findings from metabolomic studies in this field. Most of the studied biomarkers require further validation in large studies and in a broad range of populations in order to be implemented into routine CKD management. A panel of biomarkers, including earlier biomarkers of renal damage, seems to be a reasonable approach to be applied in clinical practice to allow earlier diagnosis and better disease characterization based on the underlying etiologic process.


Asunto(s)
Biomarcadores/análisis , Diagnóstico Precoz , Insuficiencia Renal Crónica/diagnóstico , Insuficiencia Renal Crónica/terapia , Progresión de la Enfermedad , Glucuronidasa/análisis , Humanos , Oxidorreductasas Intramoleculares/análisis , Proteínas Klotho , Lipocalinas/análisis , Pronóstico , Sensibilidad y Especificidad , Microglobulina beta-2/análisis
6.
Cell Physiol Biochem ; 45(6): 2268-2282, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29550818

RESUMEN

BACKGROUND/AIMS: Klotho is a multifunctional protein expressed predominantly in kidney tubular epithelium. Here, we investigated the protective effects of Klotho on necroptosis in renal ischemic-reperfusion injury (IRI) and the role of oxidative stress in this process. METHODS: Mice were subjected to bilateral renal pedicle clamping. Mouse renal tubular epithelial (TCMK-1) cells were exposed to hypoxia/reoxygenation (H/R) or H2O2. Kidney samples from acute kidney injury (AKI) patients and controls were examined by immunofluorescence. Klotho protein and N-acetyl-L-cysteine (NAC) were used to define their roles in mediating necroptosis. Necroptosis was assessed by TUNEL staining, immunoblotting, and real-time PCR. Oxidative stress was studied via ELISA, immunoblotting, colorimetric, and thiobarbituric acid reactive substances assays. RESULTS: Renal IRI induced Klotho deficiency in the serum and kidney, but an increase in the urine. The levels of the necroptotic markers receptor-interacting protein kinase (RIP) 1, RIP3, IL-1ß, and TUNEL-positive cells increased after IRI; all increases were ameliorated by Klotho. In TCMK-1 cells, Klotho and NAC attenuated the elevation in RIP1, RIP3, and LDH release induced by H/R or H2O2. Moreover, Klotho decreased the levels of oxidative stress biomarkers and elevated superoxide dismutase 2 expression in both in vivo and in vitro experiments. Studies in human samples further confirmed the Klotho deficiency and increased formation of RIP3 puncta in AKI kidneys. CONCLUSION: Klotho protects tubular epithelial cells from IRI and its anti-necroptotic role may be associated with oxidative stress inhibition.


Asunto(s)
Lesión Renal Aguda/patología , Glucuronidasa/metabolismo , Riñón/patología , Necrosis/patología , Estrés Oxidativo , Daño por Reperfusión/patología , Lesión Renal Aguda/tratamiento farmacológico , Lesión Renal Aguda/metabolismo , Animales , Línea Celular , Femenino , Glucuronidasa/análisis , Glucuronidasa/uso terapéutico , Humanos , Riñón/efectos de los fármacos , Riñón/metabolismo , Proteínas Klotho , Masculino , Ratones , Ratones Endogámicos BALB C , Persona de Mediana Edad , Necrosis/tratamiento farmacológico , Necrosis/metabolismo , Estrés Oxidativo/efectos de los fármacos , Daño por Reperfusión/tratamiento farmacológico , Daño por Reperfusión/metabolismo
7.
Crit Care ; 22(1): 111, 2018 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-29716625

RESUMEN

BACKGROUND: Increased vascular permeability is a pathophysiological hallmark of sepsis and results in increased transcapillary leakage of plasma fluid, hypovolemia, and interstitial edema formation. 6% hydroxyethyl starch (HES 130/0.4) is commonly used to treat hypovolemia to maintain adequate organ perfusion and oxygen delivery. The present study was designed to investigate the effects of 6% HES 130/0.4 on glycocalyx integrity and vascular permeability in lipopolysaccharide (LPS)-induced pulmonary inflammation and systemic inflammation in mice. METHODS: 6% HES 130/0.4 or a balanced electrolyte solution (20 ml/kg) was administered intravenously 1 h after cecal ligation and puncture (CLP) or LPS inhalation. Sham-treated animals receiving 6% HES 130/0.4 or the electrolyte solution served as controls. The thickness of the endovascular glycocalyx was visualized by intravital microscopy in lung (LPS inhalation model) or cremaster muscle (CLP model). Syndecan-1, hyaluronic acid, and heparanase levels were measured in blood samples. Vascular permeability in the lungs, liver, kidney, and brain was measured by Evans blue extravasation. RESULTS: Both CLP induction and LPS inhalation resulted in increased vascular permeability in the lung, liver, kidney, and brain. 6% HES 130/0.4 infusion led to significantly reduced plasma levels of syndecan-1, heparanase, and hyaluronic acid, which was accompanied by a preservation of the glycocalyx thickness in postcapillary venules of the cremaster (0.78 ± 0.09 µm vs. 1.39 ± 0.10 µm) and lung capillaries (0.81 ± 0.09 µm vs. 1.49 ± 0.12 µm). CONCLUSIONS: These data suggest that 6% HES 130/0.4 exerts protective effects on glycocalyx integrity and attenuates the increase of vascular permeability during systemic inflammation.


Asunto(s)
Permeabilidad Capilar/efectos de los fármacos , Glicocálix/metabolismo , Derivados de Hidroxietil Almidón/farmacocinética , Músculos Abdominales/efectos de los fármacos , Músculos Abdominales/metabolismo , Animales , Permeabilidad Capilar/fisiología , Modelos Animales de Enfermedad , Método Doble Ciego , Azul de Evans , Glucuronidasa/análisis , Glucuronidasa/sangre , Glicocálix/efectos de los fármacos , Ácido Hialurónico/análisis , Ácido Hialurónico/sangre , Hialuronoglucosaminidasa/análisis , Hialuronoglucosaminidasa/sangre , Derivados de Hidroxietil Almidón/uso terapéutico , Hipovolemia/tratamiento farmacológico , Pulmón/efectos de los fármacos , Pulmón/metabolismo , Ratones , Ratones Endogámicos C57BL , Neumonía/complicaciones , Neumonía/prevención & control , Estadísticas no Paramétricas , Sindecano-1/análisis , Sindecano-1/sangre
8.
Kidney Int ; 87(6): 1089-91, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-26024025

RESUMEN

Klotho is an evolutionarily highly conserved protein related to longevity. Increasing evidence of a vascular protecting effect of the Klotho protein has emerged and might be important for future treatments of uremic vascular calcification. It is still disputed whether Klotho is locally expressed in the vasculature or whether its vascular effects arise uniquely from its presence in the circulation.


Asunto(s)
Aorta/química , Conservadores de la Densidad Ósea/farmacología , Ergocalciferoles/farmacología , Glucuronidasa/análisis , Riñón/química , Glándulas Paratiroides/química , Uremia/metabolismo , Animales , Femenino , Humanos
9.
Kidney Int ; 87(6): 1141-52, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-25692955

RESUMEN

Klotho plays an important role in the pathogenesis of cardiovascular disease in chronic kidney disease (CKD). Klotho is highly expressed in the kidney and parathyroid glands, but its presence in the vasculature is debated. Renal Klotho is decreased in CKD, but the effect of uremia on Klotho in other tissues is not defined. The effect of vitamin D receptor activator therapy in CKD on the expression of Klotho in various tissues is also in debate. In uremic rats (surgical 5/6th nephrectomy model), we compared 3 months of treatment with and without paricalcitol on Klotho immunostaining in the kidney, parathyroid glands, and aorta. With uremia, Klotho was unchanged in the parathyroid, significantly decreased in the kidney (66%) and the intimal-medial area of the aorta (69%), and significantly increased in the adventitial area of the aorta (67%) compared with controls. Paricalcitol prevented the decrease of Klotho in the kidney, increased expression in the parathyroid (31%), had no effect in the aortic media, but blunted the increase of Klotho in the aortic adventitia. We propose that fibroblasts are responsible for the expression of Klotho in the adventitia. In hyperplastic human parathyroid tissue from uremic patients, Klotho was higher in oxyphil compared with chief cells. Thus, under our conditions of moderate CKD and mild-to-moderate hyperphosphatemia in rats, the differential expression of Klotho and its regulation by paricalcitol in uremia is tissue-dependent.


Asunto(s)
Aorta/química , Conservadores de la Densidad Ósea/farmacología , Ergocalciferoles/farmacología , Glucuronidasa/análisis , Riñón/química , Glándulas Paratiroides/química , Uremia/metabolismo , Adventicia/química , Animales , Aorta/metabolismo , Modelos Animales de Enfermedad , Femenino , Fibroblastos/química , Glucuronidasa/metabolismo , Humanos , Hiperparatiroidismo Secundario/metabolismo , Hiperparatiroidismo Secundario/patología , Hiperfosfatemia/metabolismo , Riñón/metabolismo , Proteínas Klotho , Nefrectomía , Células Oxífilas/química , Glándulas Paratiroides/metabolismo , Glándulas Paratiroides/patología , Ratas , Ratas Sprague-Dawley , Insuficiencia Renal Crónica/complicaciones , Insuficiencia Renal Crónica/tratamiento farmacológico , Túnica Íntima/química , Uremia/etiología
10.
Appl Environ Microbiol ; 81(21): 7443-7, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26276114

RESUMEN

We developed a fluorescent ß-d-glucuronidase activity (BGA)-based assay for detecting and quantifying Escherichia coli in samples to assess the biocide efficacy of hand antiseptics. The fluorescence level is proportional to the number of viable E. coli organisms present. We compared our assay results to those of the E. coli plate count method specified by the European standard for testing hygienic hand rub disinfectant products (EN1500). The plate count method requires excessive handling and materials and is not valid if the number of organisms per plate is too low or high for counting in many of the samples. We optimized the fluorescent assay based on the cleavage of 4-methylumbelliferyl-ß-d-glucuronide by adding 4-nitrophenyl-ß-d-glucuronide, a nonfluorogenic BGA substrate, to induce glucuronidase activity and reduce assay time. Furthermore, our method can be automated and eliminates the need for multiple dilutions. Fluorescence was temporally monitored, and the time required to reach a specific value of fluorescence was correlated with the initial number of viable E. coli organisms on the samples. There was a positive correlation (P < 0.05) with a high correlation coefficient (R(2) = 0.82) between the E. coli counts by plate count and fluorescence methods. Reported effects in fluorescent BGA were compared to the EN1500 plate count method with five hand disinfectants. We found our method more advantageous, because it was as sensitive as the EN1500 method, requires less time to complete, and is less expensive and less laborious than conventional plating techniques.


Asunto(s)
Escherichia coli/efectos de los fármacos , Fluorometría/métodos , Glucuronidasa/análisis , Desinfectantes para las Manos/farmacología , Recuento de Colonia Microbiana/métodos , Escherichia coli/enzimología , Pruebas de Sensibilidad Microbiana/métodos , Sensibilidad y Especificidad , Factores de Tiempo
11.
Appl Environ Microbiol ; 81(5): 1735-43, 2015 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-25548044

RESUMEN

The increased awareness of the role of environmental matrices in enteric disease transmission has resulted in the need for rapid, field-based methods for fecal indicator bacteria and pathogen detection. Evidence of the specificity of ß-glucuronidase-based assays for detection of Escherichia coli from environmental matrices relevant to enteric pathogen transmission in developing countries, such as hands, soils, and surfaces, is limited. In this study, we quantify the false-positive rate of a ß-glucuronidase-based E. coli detection assay (Colilert) for two environmental reservoirs in Bangladeshi households (hands and soils) and three fecal composite sources (cattle, chicken, and humans). We investigate whether or not the isolation source of E. coli influences phenotypic and genotypic characteristics. Phenotypic characteristics include results of biochemical assays provided by the API-20E test; genotypic characteristics include the Clermont phylogroup and the presence of enteric and/or environmental indicator genes sfmH, rfaI, and fucK. Our findings demonstrate no statistically significant difference in the false-positive rate of Colilert for environmental compared to enteric samples. E. coli isolates from all source types are genetically diverse, representing six of the seven phylogroups, and there is no difference in relative frequency of phylogroups between enteric and environmental samples. We conclude that Colilert, and likely other ß-glucuronidase-based assays, is appropriate for detection of E. coli on hands and in soils with low false-positive rates. Furthermore, E. coli isolated from hands and soils in Bangladeshi households are diverse and indistinguishable from cattle, chicken, and human fecal isolates, using traditional biochemical assays and phylogrouping.


Asunto(s)
Escherichia coli/clasificación , Escherichia coli/aislamiento & purificación , Heces/microbiología , Glucuronidasa/análisis , Mano/microbiología , Microbiología del Suelo , Técnicas de Tipificación Bacteriana , Bangladesh , Escherichia coli/genética , Escherichia coli/fisiología , Reacciones Falso Positivas , Técnicas de Genotipaje , Humanos , Población Rural
12.
BMC Microbiol ; 15: 225, 2015 Oct 23.
Artículo en Inglés | MEDLINE | ID: mdl-26494007

RESUMEN

BACKGROUND: The carA and carB genes code the small and large subunits of carbamoyl-phosphate synthase (CPS) that responsible for arginine and pyrimidine production. The purpose of this work was to study the gene organization and expression pattern of carAB operon, and the biological functions of carA and carB genes in Xanthomonas citri subsp. citri. METHODS: RT-PCR method was employed to identify the full length of carAB operon transcript in X. citri subsp. citri. The promoter of carAB operon was predicted and analyzed its activity by fusing a GUS reporter gene. The swimming motility was tested on 0.25% agar NY plates with 1% glucose. Biofilm was measured by cell adhesion to polyvinyl chloride 96-well plate. RESULTS: The results indicated that carAB operon was composed of five gene members carA-orf-carB-greA-rpfE. A single promoter was predicted from the nucleotide sequence upstream of carAB operon, and its sensitivity to glutamic acid, uracil and arginine was confirmed by fusing a GUS reporter gene. Deletion mutagenesis of carB gene resulted in reduced abilities in swimming on soft solid media and in forming biofilm on polystyrene microtiter plates. CONCLUSIONS: From these results, we concluded that carAB operon was involved in multiple biological processes in X. citri subsp. citri.


Asunto(s)
Biopelículas/crecimiento & desarrollo , Carbamoil-Fosfato Sintasa (Amoniaco)/genética , Carbamoil-Fosfato Sintasa (Amoniaco)/metabolismo , Locomoción , Operón , Xanthomonas/genética , Xanthomonas/fisiología , Análisis Mutacional de ADN , Perfilación de la Expresión Génica , Orden Génico , Genes Bacterianos , Genes Reporteros , Glucuronidasa/análisis , Glucuronidasa/genética , Regiones Promotoras Genéticas , Eliminación de Secuencia , Transcripción Genética
13.
Virus Genes ; 51(1): 96-104, 2015 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-25947569

RESUMEN

Two distinct caulimoviruses, Dahlia mosaic virus (DMV) and Dahlia common mosaic virus (DCMV), and an endogenous plant pararetroviral sequence (DvEPRS, formerly known as DMV-D10) were reported from dahlia (Dahlia spp). Promoter elements from these dahlia-associated pararetroviruses were identified and characterized. The TATA box, the CAAT box, the transcription start site, the polyadenylation signal, and regulation factors, characteristic of caulimovirus promoters, were present in each of these promoter regions. Each of the promoter regions was separately cloned into a binary vector containing ß-glucuronidase (GUS) reporter gene and delivered into Agrobacterium tumefaciens by electroporation followed by agroinfiltration into Nicotiana benthamiana. The activity of the 35S promoter homologs was determined by transient expression of the GUS gene both in qualitative and quantitative assays. The length of the promoter regions in DMV, DCMV, and DvEPRS corresponded to 438, 439, and 259 bp, respectively. Quantitative GUS assays showed that the promoters from DMV and DCMV resulted in higher levels of gene expression compared to that of DvEPRS in N. benthamiana leaf tissue. Significant differences were observed among the three promoters (p < 0.001). Qualitative GUS assays were consistent with quantitative GUS results. This study provides important information on new promoters for prospect applications as novel promoters for their potential use in foreign gene expression in plants.


Asunto(s)
Caulimovirus/genética , Dahlia/virología , Retrovirus Endógenos/genética , Regiones Promotoras Genéticas , Fusión Artificial Génica , Caulimovirus/aislamiento & purificación , Clonación Molecular , Electroporación , Retrovirus Endógenos/aislamiento & purificación , Perfilación de la Expresión Génica , Genes Reporteros , Vectores Genéticos , Glucuronidasa/análisis , Glucuronidasa/genética , Elementos Reguladores de la Transcripción , Nicotiana/virología , Sitio de Iniciación de la Transcripción
14.
Clin Chem ; 60(7): 933-40, 2014 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-23757358

RESUMEN

BACKGROUND: Fibroblast growth factor-23 (FGF-23) and Klotho constitute the main regulatory system of phosphorus homeostasis. Beyond this physiological role, there is growing evidence suggesting that this system has relevant pathophysiological implications in different clinical processes. CONTENT: In this review we discuss the pathophysiological implications of the FGF-23/Klotho system and the potential utility that measurements of its components may have as clinical biomarkers in different clinical settings, such as progression of chronic kidney disease, acute renal failure, and secondary hyperparathyroidism, as well as vascular dysfunction, atherosclerosis, and cardiovascular morbidity and mortality. We outline and discuss the current commercially available assays for determination of FGF-23 and Klotho and the assay limitations that must be overcome to translate these biomarkers into reliable indicators in clinical practice. SUMMARY: In addition to its physiological role, the FGF-23/Klotho system appears to provide important information regarding the pathophysiology of several clinical conditions. Although there has been increasing study of the components of this new biological system and their potential use as clinical biomarkers, the ultimate value of this system in clinical practice will not be known until remaining assay limitations can be overcome and adequately designed studies have been conducted to demonstrate its clinical utility.


Asunto(s)
Biomarcadores/metabolismo , Factores de Crecimiento de Fibroblastos/metabolismo , Glucuronidasa/metabolismo , Lesión Renal Aguda/diagnóstico , Lesión Renal Aguda/metabolismo , Biomarcadores/análisis , Enfermedades Cardiovasculares/diagnóstico , Enfermedades Cardiovasculares/metabolismo , Enfermedades Cardiovasculares/mortalidad , Ensayo de Inmunoadsorción Enzimática , Factor-23 de Crecimiento de Fibroblastos , Factores de Crecimiento de Fibroblastos/análisis , Glucuronidasa/análisis , Humanos , Hiperparatiroidismo Secundario/diagnóstico , Hiperparatiroidismo Secundario/metabolismo , Proteínas Klotho , Insuficiencia Renal Crónica/diagnóstico , Insuficiencia Renal Crónica/metabolismo
15.
BMC Microbiol ; 14: 295, 2014 Nov 25.
Artículo en Inglés | MEDLINE | ID: mdl-25420869

RESUMEN

BACKGROUND: Genetic models have been developed in divergent branches of the class Alphaproteobacteria to help answer a wide spectrum of questions regarding bacterial physiology. For example, Sinorhizobium meliloti serves as a useful representative for investigating rhizobia-plant symbiosis and nitrogen fixation, Caulobacter crescentus for studying cell cycle regulation and organelle biogenesis, and Zymomonas mobilis for assessing the potentials of metabolic engineering and biofuel production. A tightly regulated promoter that enables titratable expression of a cloned gene in these different models is highly desirable, as it can facilitate observation of phenotypes that would otherwise be obfuscated by leaky expression. RESULTS: We compared the functionality of four promoter regions in S. meliloti (P(araA), P(tauA), P(rhaR), and P(melA)) by constructing strains carrying fusions to the uidA reporter in their genomes and measuring beta-glucuronidase activities when they were induced by arabinose, taurine, rhamnose, or melibiose. P(tauA) was chosen for further study because it, and, to a lesser extent, P(melA), exhibited characteristics suitable for efficient modulation of gene expression. The levels of expression from P(tauA) depended on the concentrations of taurine, in both complex and defined media, in S. meliloti as well as C. crescentus and Z. mobilis. Moreover, our analysis indicated that TauR, TauC, and TauY are each necessary for taurine catabolism and substantiated their designated roles as a transcriptional activator, the permease component of an ABC transporter, and a major subunit of the taurine dehydrogenase, respectively. Finally, we demonstrated that P(tauA) can be used to deplete essential cellular factors in S. meliloti, such as the PleC histidine kinase and TatB, a component of the twin-arginine transport machinery. CONCLUSIONS: The P(tauA) promoter of S. meliloti can control gene expression with a relatively inexpensive and permeable inducer, taurine, in diverse alpha-proteobacteria. Regulated expression of the same gene in different hosts can be achieved by placing both tauR and P(tauA) on appropriate vectors, thus facilitating inspection of conservation of gene function across species.


Asunto(s)
Regulación Bacteriana de la Expresión Génica/efectos de los fármacos , Regiones Promotoras Genéticas/efectos de los fármacos , Sinorhizobium meliloti/genética , Taurina/metabolismo , Fusión Artificial Génica , Genes Reporteros , Genética Microbiana/métodos , Glucuronidasa/análisis , Glucuronidasa/genética , Biología Molecular/métodos
16.
Pediatr Blood Cancer ; 61(10): 1883-5, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-24737657

RESUMEN

Heparanase is an endo-beta D-glucuronidase capable of cleaving heparan sulfate side chains, yielding heparan sulfate fragments. Heparanase activity has been correlated with the metastatic potential of tumor-derived cells, angiogenesis, autoimmunity and inflammation. We performed a study of heparanase expression in specimens obtained from patients with Langerhans cell histiocytosis (LCH). Paraffin embedded slides from 25 patients were studied by immunohistochemistry for heparanase. Most patients had positive staining for heparanase (21/25). There was no positive association with severity of disease and other clinical characteristics. Further studies are required to clarify the role of heparanase in the pathogenesis of LCH.


Asunto(s)
Glucuronidasa/biosíntesis , Histiocitosis de Células de Langerhans/enzimología , Adolescente , Adulto , Niño , Preescolar , Femenino , Glucuronidasa/análisis , Histiocitosis de Células de Langerhans/patología , Humanos , Inmunohistoquímica , Lactante , Masculino , Adulto Joven
17.
Appl Microbiol Biotechnol ; 98(14): 6387-95, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24743982

RESUMEN

Amycolatopsis sp. ATCC 39116 is able to synthesize the important flavoring agent vanillin from cheap natural substrates. The bacterium is therefore of great interest for the industry and used for the fermentative production of vanillin. In order to improve the production of natural vanillin with Amycolatopsis sp. ATCC 39116, the strain has been genetically engineered to optimize the metabolic flux towards the desired product. Extensive metabolic engineering was hitherto hampered, due to the lack of genetic tools like functional promoters and expression vectors. In this study, we report the establishment of a plasmid-based gene expression system for Amycolatopsis sp. ATCC 39116 that allows a further manipulation of the genotype. Four new Escherichia coli-Amycolatopsis shuttle vectors harboring different promoter elements were constructed, and the functionality of these regulatory elements was proven by the expression of the reporter gene gusA, encoding a ß-glucuronidase. Glucuronidase activity was detected in all plasmid-harboring strains, and remarkable differences in the expression strength of the reporter gene depending on the used promoter were observed. The new expression vectors will promote the further genetic engineering of Amycolatopsis sp. ATCC 39116 to get insight into the metabolic network and to improve the strain for a more efficient industrial use.


Asunto(s)
Actinomycetales/genética , Actinomycetales/metabolismo , Benzaldehídos/metabolismo , Expresión Génica , Vectores Genéticos , Ingeniería Metabólica/métodos , Fusión Artificial Génica , Escherichia coli/genética , Genes Reporteros , Glucuronidasa/análisis , Glucuronidasa/genética , Plásmidos , Regiones Promotoras Genéticas
18.
Appl Microbiol Biotechnol ; 98(20): 8641-55, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-25012786

RESUMEN

Inducible expression is a versatile genetic tool for controlling gene transcription, determining gene functions and other uses. Herein, we describe our attempts to create several inducible systems based on a cumate or a resorcinol switch, a hammerhead ribozyme, the LacI repressor, and isopropyl ß-d-thiogalactopyranoside (IPTG). We successfully developed a new cumate (p-isopropylbenzoic acid)-inducible gene switch in actinobacteria that is based on the CymR regulator, the operator sequence (cmt) from the Pseudomonas putida cumate degradation operon and P21 synthetic promoter. Resorcinol-inducible expression system is also functional and is composed of the RolR regulator and the PA3 promoter fused with the operator (rolO) from the Corynebacterium glutamicum resorcinol catabolic operon. Using the gusA (ß-glucuronidase) gene as a reporter, we showed that the newly generated expression systems are tightly regulated and hyper-inducible. The activity of the uninduced promoters is negligible in both cases. Whereas the induction factor reaches 45 for Streptomyces albus in the case of cumate switch and 33 in the case of resorcinol toggle. The systems are also dose-dependent, which allows the modulation of gene expression even from a single promoter. In addition, the cumate system is versatile, given that it is functional in different actinomycetes. Finally, these systems are nontoxic and inexpensive, as these are characteristics of cumate and resorcinol, and they are easy to use because inducers are water-soluble and easily penetrate cells. Therefore, the P21-cmt-CymR and PA3-rolO-RolR systems are powerful tools for engineering actinobacteria.


Asunto(s)
Actinobacteria/genética , Actinobacteria/metabolismo , Benzoatos/metabolismo , Biología Molecular/métodos , Resorcinoles/metabolismo , Activación Transcripcional/efectos de los fármacos , Actinobacteria/efectos de los fármacos , Corynebacterium glutamicum/genética , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Genes Reporteros , Vectores Genéticos , Genética Microbiana/métodos , Glucuronidasa/análisis , Glucuronidasa/genética , Isopropil Tiogalactósido/metabolismo , Represoras Lac/genética , Represoras Lac/metabolismo , Datos de Secuencia Molecular , Regiones Operadoras Genéticas , Regiones Promotoras Genéticas , Pseudomonas putida/genética , ARN Catalítico/genética , ARN Catalítico/metabolismo , Análisis de Secuencia de ADN , Factores de Transcripción/genética
19.
Neoplasma ; 61(1): 99-109, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24195516

RESUMEN

Irinotecan (CPT-11) is considered an important drug in the treatment of colorectal cancer, but its continuous administration reduces its sensitivity and influences the curative effect. The metabolism of CPT-11 is mainly controlled by carboxy-lesterase (CES), UDP-glucuronosyltransferase 1A (UGT1A), and ß-glucuronidase (GUSB). Studies to date have shown that methylation acts as an important mechanism for gene expression to suppress the metabolic enzymes of many chemotherapeutics. This study, which selected 99 colorectal cancer patients, 23 of whom had paracancerous tissues and eight of whom had large intestine adenomas, aimed to investigate the correlation between the protein expression of the CPT-11 metabolic enzyme genes CES2, UGT1A1, and GUSB and various clinical pathological parameters of colorectal cancer tissues, as well as the relationship between methylation regulation and the gene expression of CES2, UGT1A1, and GUSB. We used immunohistochemistry staining, methylation-specific PCR, and clinical status to reveal the possible regulatory targets of chemotherapeutic resistance in colorectal cancer and to provide new ideas and countermeasures to reverse anti-cancer drug resistance and chemosensitization. The results showed that the expression of CES2, UGTA1A1, and GUSB varies in colorectal pathology tissues and that the expression of CES2 is somewhat related to tumor staging. This relationship is likely caused by the gene regulation of UGT1A1 and GUSB, and other regulation mechanisms may also be involved. The methylation of the CES2 gene is irrelevant to the morbidity associated with colorectal cancer. The GUSB gene showed no significant differences in methylation, and the hemi-methylation was also positive, the regulating ability of which needs to be verified. The potential role of these genes in the colorectal cancer progression, which may be directly related to the methylation regulation of UGT1A1, requires further research. The promoter of the UGT1A1 gene in colorectal cancer cells is methylated, which is an important mechanism of UGT1A1 gene silencing and can be regarded as the target point of research for CPT-11 drug resistance and control mechanisms for the reversal of drug resistance.


Asunto(s)
Carboxilesterasa/genética , Neoplasias Colorrectales/genética , Metilación de ADN , Glucuronidasa/genética , Glucuronosiltransferasa/genética , Adulto , Anciano , Anciano de 80 o más Años , Carboxilesterasa/análisis , Neoplasias Colorrectales/química , Neoplasias Colorrectales/patología , Femenino , Glucuronidasa/análisis , Glucuronosiltransferasa/análisis , Humanos , Inmunohistoquímica , Masculino , Persona de Mediana Edad , Reacción en Cadena de la Polimerasa , Regiones Promotoras Genéticas
20.
Biotechnol Lett ; 36(9): 1893-9, 2014 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-24863295

RESUMEN

The engineering of stomatal activity under water deficit through guard cell-specific gene regulation is an effective approach to improve drought tolerance of crops but it requires an appropriate promoter(s) inducible by water deficit in guard cells. We report that a chimeric promoter can induce guard cell-specific gene expression under water deficit. A chimeric promoter, p4xKST82-rd29B, was constructed using a tetramer of the 82 bp guard cell-specific regulatory region of potato KST1 promoter (4xKST82) and Arabidopsis dehydration-responsive rd29B promoter. Transgenic tobacco plants carrying p4xKST82-rd29B:mGFP-GUS exhibited GUS expression in response to water deficit. GUS enzyme activity of p4xKST82-rd29B:mGFP-GUS transgenic plants increased ~300 % by polyethylene glycol treatment compared to that of control plant but not by abscisic acid (ABA), indicating that the p4xKST82-rd29B chimeric promoter can be used to induce the guard cell-specific expression of genes of interest in response to water deficit in an ABA-independent manner.


Asunto(s)
Deshidratación , Regulación de la Expresión Génica de las Plantas , Nicotiana/fisiología , Células Vegetales/fisiología , Estrés Fisiológico , Arabidopsis/genética , Genes Reporteros , Glucuronidasa/análisis , Glucuronidasa/genética , Proteínas Fluorescentes Verdes/análisis , Proteínas Fluorescentes Verdes/genética , Plantas Modificadas Genéticamente/genética , Plantas Modificadas Genéticamente/fisiología , Regiones Promotoras Genéticas , Solanum tuberosum/genética , Nicotiana/genética
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