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1.
Emerg Infect Dis ; 30(7): 1344-1351, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-38816345

RESUMEN

The incidence of spotted fever group (SFG) rickettsioses in the United States has tripled since 2010. Rocky Mountain spotted fever, the most severe SFG rickettsiosis, is caused by Rickettsia rickettsii. The lack of species-specific confirmatory testing obfuscates the relative contribution of R. rickettsii and other SFG Rickettsia to this increase. We report a newly recognized rickettsial pathogen, Rickettsia sp. CA6269, as the cause of severe Rocky Mountain spotted fever-like illness in 2 case-patients residing in northern California. Multilocus sequence typing supported the recognition of this pathogen as a novel Rickettsia genotype most closely related to R. rickettsii. Cross-reactivity observed for an established molecular diagnostic test indicated that Rickettsia sp. CA6269 might be misidentified as R. rickettsii. We developed a Rickettsia sp. CA6269-specific real-time PCR to help resolve this diagnostic challenge and better characterize the spectrum of clinical disease and ecologic epidemiology of this pathogen.


Asunto(s)
Tipificación de Secuencias Multilocus , Filogenia , Rickettsia , Fiebre Maculosa de las Montañas Rocosas , Humanos , California/epidemiología , Fiebre Maculosa de las Montañas Rocosas/diagnóstico , Fiebre Maculosa de las Montañas Rocosas/microbiología , Fiebre Maculosa de las Montañas Rocosas/epidemiología , Rickettsia/genética , Rickettsia/aislamiento & purificación , Rickettsia/clasificación , Masculino , Femenino , Persona de Mediana Edad , Rickettsiosis Exantemáticas/diagnóstico , Rickettsiosis Exantemáticas/microbiología , Rickettsiosis Exantemáticas/epidemiología , Adulto , Rickettsia rickettsii/genética
2.
BMC Vet Res ; 20(1): 279, 2024 Jun 27.
Artículo en Inglés | MEDLINE | ID: mdl-38937767

RESUMEN

Rickettsia occurs worldwide and rickettsiosis is recognized as an emerging infection in several parts of the world. Ticks are reservoir hosts for pathogenic Rickettsia species in humans and domestic animals. Most pathogenic Rickettsia species belong to the spotted Fever Group (SFG). This study aimed to identify and diagnose tick fauna and investigate the prevalence of Rickettsia spp. in ticks collected from domestic animals and dogs in the rural regions of Kerman Province, Southeast Iran. In this study, tick species (fauna) were identified and 2100 ticks (350 pooled samples) from two genera and species including Rhipicephalus linnaei (1128) and Hyalomma deteritum (972) were tested to detect Rickettsia genus using Real-time PCR. The presence of the Rickettsia genus was observed in 24.9% (95%CI 20.28-29.52) of the pooled samples. Sequencing and phylogenetic analyses revealed the presence of Rickettsia aeschlimannii (48.98%), Rickettsia conorii israelensis (28.57%), Rickettsia sibirica (20.41%), and Rickettsia helvetica (2.04%) in the positive samples. The results showed a significant association between county variables and the following variables: tick spp. (p < 0.001), Rickettsia genus infection in ticks (p < 0.001) and Rickettsia spp. (p < 0.001). In addition, there was a significant association between tick species and host animals (dogs and domestic animals) (p < 0.001), Rickettsia spp infection in ticks (p < 0.001), and Rickettsia spp. (p < 0.001). This study indicates a high prevalence of Rickettsia spp. (SFG) in ticks of domestic animals and dogs in rural areas of Kerman Province. The health system should be informed of the possibility of rickettsiosis and the circulating species of Rickettsia in these areas.


Asunto(s)
Rickettsia , Animales , Rickettsia/aislamiento & purificación , Rickettsia/genética , Rickettsia/clasificación , Irán/epidemiología , Perros , Enfermedades de los Perros/microbiología , Enfermedades de los Perros/epidemiología , Filogenia , Ixodidae/microbiología , Bovinos , Ovinos , Caballos , Gatos , Femenino , Cabras , Masculino , Enfermedades de los Bovinos/microbiología , Enfermedades de los Bovinos/epidemiología , Infestaciones por Garrapatas/veterinaria , Infestaciones por Garrapatas/epidemiología , Infecciones por Rickettsia/veterinaria , Infecciones por Rickettsia/epidemiología , Infecciones por Rickettsia/microbiología , Animales Domésticos , Enfermedades de las Ovejas/microbiología , Enfermedades de las Ovejas/epidemiología , Oveja Doméstica
3.
J Infect Chemother ; 30(7): 590-596, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-38159641

RESUMEN

INTRODUCTION: Tick-borne diseases (TBDs) are a growing threat in Japan. However, distribution of ticks and their possession of human pathogens remain poorly understood. METHODS: In the present study, we collected 3477 ticks at 6 remote, woodland sites in Ibaraki prefecture between May 23 and November 4, 2021, and investigated the distribution and the possession of spotted fever group Rickettia (SFGR). RESULTS: The collected ticks included Haemaphysalis flava (78.3 %), Haemaphysalis longicornis (9.0 %), Haemaphysalis hystricis (4.6 %), Ixodes turdus (4.3 %), Amblyomma testudinarium (2.1 %), Haemaphysalis cornigera (0.9 %), Haemaphysalis formosensis (0.9 %), Haemaphysalis megaspinosa (0.2 %), Ixodes ovatus (0.1 %), Ixodes nipponensis (0.09 %), and Ixodes columnae (0.03 %). Of 2160 DNA samples extracted from the ticks, the gltA gene and the 17-kDa antigen gene of SFGR were detected in 67 samples. Among 1682 samples from adult and nymph ticks, the positive rate of SFGR was 2.7 %. Sequence analyses of the partial 17-kDa antigen gene demonstrated that the detected SFGR were classified into 8 groups (G1 to G8). The sequences of G2, G4, G5, G6, and G7 were either identical to or differed by one base pair from those of Rickettsia asiatica, Rickettsia tamurae, Rickettsia monacensis, Rickettsia canadensis, and Rickettsia felis, respectively. CONCLUSION: The present study revealed a diverse tick fauna in Ibaraki prefecture, including detection of species commonly found in southwestern Japan. Although the prevalence of SFGR in ticks was lower than in previous studies, several SFGR causing human infection may be present.


Asunto(s)
Rickettsia , Animales , Japón/epidemiología , Rickettsia/aislamiento & purificación , Rickettsia/genética , Rickettsia/clasificación , Rickettsiosis Exantemáticas/epidemiología , Rickettsiosis Exantemáticas/microbiología , Humanos , Femenino , Masculino , Garrapatas/microbiología , Ixodidae/microbiología , Enfermedades por Picaduras de Garrapatas/epidemiología , Enfermedades por Picaduras de Garrapatas/microbiología , ADN Bacteriano/genética , Filogenia
4.
Parasitol Res ; 123(7): 261, 2024 Jul 05.
Artículo en Inglés | MEDLINE | ID: mdl-38967653

RESUMEN

Ticks are blood-sucking arthropods that can transmit pathogens to their host. As insular ecosystems can enhance tick-host interactions, this study aimed to understand tick diversity, pathogen presence, and their respective associations in the Azores and Madeira archipelagos. Unfed or partially engorged ticks (n = 120) were collected from 58 cats and dogs in the Azores (n = 41 specimens) and Madeira (n = 79 specimens) from November 2018 to March 2019. Vector identification was based on morphology and molecular criteria. For pathogen sequencing, 18S gene fragment for Babesia/Hepatozoon and gltA for Rickettsia were performed. Sequence data was explored using BLAST and BLAST and phylogenetic inference tools. In the Azores, Ixodes hexagonus, I. ventalloi, and Rhipicephalus sanguineus (n = 6; 14.6%, n = 6; 14.6%, and n = 29; 70.7% respectively) were found and in Madeira I. ricinus and R. sanguineus (n = 78, 98.7%; and n = 1, 1.3%; respectively) were identified. Tick COI markers confirmed species highlighting confirmation of R. sanguineus s.s. and genotype A of I. ventalloi. In the Azores Islands, the detected Rickettsia massiliae was linked to R. sanguineus (dogs and cats) and I. hexagonus (dogs), and in Madeira Island, R. monacensis (dogs) and Hepatozoon silvestris (cats) were found associated with I. ricinus. Further, I. ventalloi presence in the Azores expands west its known range, and Hepatozoon silvestris in Madeira may suggest that I. ricinus could have a role as a potential vector. Finally, as R. massiliae and R. monacensis presence underlines public health risks, surveillance by health authorities is crucial as pathogen-tick interactions may drive disease spread, therefore monitoring remains pivotal for disease prevention.


Asunto(s)
Babesia , Rickettsia , Animales , Azores , Gatos , Rickettsia/aislamiento & purificación , Rickettsia/genética , Rickettsia/clasificación , Babesia/genética , Babesia/aislamiento & purificación , Babesia/clasificación , Perros , Enfermedades de los Perros/parasitología , Enfermedades de los Perros/microbiología , Filogenia , Enfermedades de los Gatos/parasitología , Enfermedades de los Gatos/microbiología , Ixodes/microbiología , Ixodes/parasitología , Infestaciones por Garrapatas/veterinaria , Infestaciones por Garrapatas/parasitología , Rhipicephalus sanguineus/microbiología , Rhipicephalus sanguineus/parasitología , Coccidios/genética , Coccidios/aislamiento & purificación , Coccidios/clasificación , Eucoccidiida/genética , Eucoccidiida/aislamiento & purificación , Eucoccidiida/clasificación
5.
BMC Microbiol ; 22(1): 15, 2022 01 07.
Artículo en Inglés | MEDLINE | ID: mdl-34996376

RESUMEN

BACKGROUND: Psyllids (Hemiptera: Psylloidea) comprise a group of plant sap-sucking insects that includes important agricultural pests. They have close associations not only with plant pathogens, but also with various microbes, including obligate mutualists and facultative symbionts. Recent studies are revealing that interactions among such bacterial populations are important for psyllid biology and host plant pathology. In the present study, to obtain further insight into the ecological and evolutionary behaviors of bacteria in Psylloidea, we analyzed the microbiomes of 12 psyllid species belonging to the family Psyllidae (11 from Psyllinae and one from Macrocorsinae), using high-throughput amplicon sequencing of the 16S rRNA gene. RESULTS: The analysis showed that all 12 psyllids have the primary symbiont, Candidatus Carsonella ruddii (Gammaproteobacteria: Oceanospirillales), and at least one secondary symbiont. The majority of the secondary symbionts were gammaproteobacteria, especially those of the family Enterobacteriaceae (order: Enterobacteriales). Among them, symbionts belonging to "endosymbionts3", which is a genus-level monophyletic group assigned by the SILVA rRNA database, were the most prevalent and were found in 9 of 11 Psyllinae species. Ca. Fukatsuia symbiotica and Serratia symbiotica, which were recognized only as secondary symbionts of aphids, were also identified. In addition to other Enterobacteriaceae bacteria, including Arsenophonus, Sodalis, and "endosymbionts2", which is another genus-level clade, Pseudomonas (Pseudomonadales: Pseudomonadaceae) and Diplorickettsia (Diplorickettsiales: Diplorickettsiaceae) were identified. Regarding Alphaproteobacteria, the potential plant pathogen Ca. Liberibacter europaeus (Rhizobiales: Rhizobiaceae) was detected for the first time in Anomoneura mori (Psyllinae), a mulberry pest. Wolbachia (Rickettsiales: Anaplasmataceae) and Rickettsia (Rickettsiales: Rickettsiaceae), plausible host reproduction manipulators that are potential tools to control pest insects, were also detected. CONCLUSIONS: The present study identified various bacterial symbionts including previously unexpected lineages in psyllids, suggesting considerable interspecific transfer of arthropod symbionts. The findings provide deeper insights into the evolution of interactions among insects, bacteria, and plants, which may be exploited to facilitate the control of pest psyllids in the future.


Asunto(s)
Gammaproteobacteria/aislamiento & purificación , Hemípteros/microbiología , Microbiota , Animales , Áfidos/microbiología , Gammaproteobacteria/clasificación , Gammaproteobacteria/genética , Hemípteros/clasificación , Liberibacter/clasificación , Liberibacter/genética , Liberibacter/aislamiento & purificación , Filogenia , Enfermedades de las Plantas/microbiología , Enfermedades de las Plantas/parasitología , Rickettsia/clasificación , Rickettsia/genética , Rickettsia/aislamiento & purificación , Serratia/clasificación , Serratia/genética , Serratia/aislamiento & purificación , Simbiosis , Wolbachia/clasificación , Wolbachia/genética , Wolbachia/aislamiento & purificación
6.
Parasite Immunol ; 43(5): e12830, 2021 05.
Artículo en Inglés | MEDLINE | ID: mdl-33713348

RESUMEN

Ticks are haematophagous arthropods with unique molecular mechanisms for digesting host blood meal while acting as vectors for various pathogens of public health significance. The tick's pharmacologically active saliva plays a fundamental role in modulating the host's immune system for several days to weeks, depending on the tick species. The vector tick has also developed sophisticated molecular mechanisms to serve as a competent vector for pathogens, including the spotted fever group (SFG) rickettsiae. Evidence is still inadequate concerning tick-rickettsiae-host interactions and saliva-assisted transmission of the pathogen to the mammalian host. Rickettsia parkeri, of the SFG rickettsia, can cause a milder version of Rocky Mountain spotted fever known as American Boutonneuse fever. The Gulf Coast tick (Amblyomma maculatum) often transmits this pathogenic rickettsia in the USA. This review discusses the knowledge gap concerning tick-rickettsiae-host interactions by highlighting the SFG rickettsia and the Am maculatum model system. Filling this knowledge gap will provide a better understanding of the tick-rickettsiae-host interactions in disease causation, which will be crucial for developing effective methods for preventing tick-borne diseases.


Asunto(s)
Antioxidantes/fisiología , Infecciones por Rickettsia/microbiología , Rickettsia/fisiología , Garrapatas/microbiología , Garrapatas/fisiología , Animales , Modelos Animales de Enfermedad , Ixodidae/microbiología , Ixodidae/fisiología , Microbiota , Oxidación-Reducción , Rickettsia/clasificación , Infecciones por Rickettsia/transmisión , Saliva/microbiología , Selenoproteínas/genética , Selenoproteínas/metabolismo , Simbiosis
7.
Artículo en Inglés | MEDLINE | ID: mdl-34214027

RESUMEN

A previously unrecognized Rickettsia species was isolated in 1976 from a pool of Ixodes pacificus ticks collected in 1967 from Tillamook County, Oregon, USA. The isolate produced low fever and mild scrotal oedema following intraperitoneal injection into male guinea pigs (Cavia porcellus). Subsequent serotyping characterized this isolate as distinct from recognized typhus and spotted fever group Rickettsia species; nonetheless, the isolate remained unevaluated by molecular techniques and was not identified to species level for the subsequent 30 years. Ixodes pacificus is the most frequently identified human-biting tick in the western United States, and as such, formal identification and characterization of this potentially pathogenic Rickettsia species is warranted. Whole-genome sequencing of the Tillamook isolate revealed a genome 1.43 Mbp in size with 32.4 mol% G+C content. Maximum-likelihood phylogeny of core proteins places it in the transitional group of Rickettsia basal to both Rickettsia felis and Rickettsia asembonensis. It is distinct from existing named species, with maximum average nucleotide identity of 95.1% to R. asembonensis and maximum digital DNA-DNA hybridization score similarity to R. felis at 80.1%. The closest similarity at the 16S rRNA gene (97.9%) and sca4 (97.5%/97.6% respectively) is to Candidatus 'Rickettsia senegalensis' and Rickettsia sp. cf9, both isolated from cat fleas (Ctenocephalides felis). We characterized growth at various temperatures and in multiple cell lines. The Tillamook isolate grows aerobically in Vero E6, RF/6A and DH82 cells, and growth is rapid at 28 °C and 32 °C. Using accepted genomic criteria, we propose the name Rickettsia tillamookensis sp. nov., with the type strain Tillamook 23. Strain Tillamook 23 is available from the Centers for Disease Control and Prevention Rickettsial Isolate Reference Collection (WDCM 1093), Atlanta, GA, USA (CRIRC accession number RTI001T) and the Collection de Souches de l'Unité des Rickettsies (WDCM 875), Marseille, France (CSUR accession number R5043). Using accepted genomic criteria, we propose the name Rickettsia tillamookensis sp. nov., with the type strain Tillamook 23 (=CRIRC RTI001=R5043).


Asunto(s)
Ixodes/microbiología , Filogenia , Rickettsia/clasificación , Animales , Técnicas de Tipificación Bacteriana , Composición de Base , ADN Bacteriano/genética , Ácidos Grasos/química , Cobayas , Masculino , Oregon , ARN Ribosómico 16S/genética , Rickettsia/aislamiento & purificación , Análisis de Secuencia de ADN
8.
Microb Ecol ; 81(1): 203-212, 2021 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-32770272

RESUMEN

Heritable microbes are an important component of invertebrate biology, acting both as beneficial symbionts and reproductive parasites. Whilst most previous research has focussed on the 'Wolbachia pandemic', recent work has emphasised the importance of other microbial symbionts. In this study, we present a survey of odonates (dragonflies and damselflies) for torix group Rickettsia, following previous research indicating that this clade can be common in other aquatic insect groups. PCR assays were used to screen a broad range of odonates from two continents and revealed 8 of 76 species tested were infected with Rickettsia. We then conducted further deeper screening of UK representatives of the Coenagrionidae damselfly family, revealing 6 of 8 UK coenagrionid species to be positive for torix Rickettsia. Analysis of Rickettsia gene sequences supported multiple establishments of symbiosis in the group. Some strains were shared between UK coenagrionid species that shared mtDNA barcodes, indicating a likely route for mitochondrial introgression between sister species. There was also evidence of coinfecting Rickettsia strains in two species. FISH analysis indicated Rickettsia were observed in the ovarioles, consistent with heritable symbiosis. We conclude that torix Rickettsia represent an important associate of odonates, being found in a broad range of species from both Europe and South America. There is evidence that coinfection can occur, vertical transmission is likely, and that symbiont movement following hybridisation may underpin the lack of 'barcoding gap' between well-established species pairs in the genus. Future work should establish the biological significance of the symbioses observed.


Asunto(s)
Odonata/microbiología , Infecciones por Rickettsia/transmisión , Rickettsia/fisiología , Simbiosis/fisiología , Animales , Código de Barras del ADN Taxonómico , Femenino , Transmisión Vertical de Enfermedad Infecciosa , Ovario/microbiología , Rickettsia/clasificación , Rickettsia/genética
9.
Microb Ecol ; 81(2): 523-534, 2021 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-32968841

RESUMEN

Maintaining an adaptive seasonality is a basic ecological requisite for cold-blooded organism insects which usually harbor various symbionts. However, how coexisting symbionts coordinate in insects during seasonal progress is still unknown. The whitefly Bemisia tabaci in China harbors the obligate symbiont Portiera that infects each individual, as well as various facultative symbionts. In this study, we investigated whitefly populations in cucumber and cotton fields from May to December 2019, aiming to reveal the fluctuations of symbiont infection frequencies, symbiont coordination in multiple infected individuals, and host plants effects on symbiont infections. The results indicated that the facultative symbionts Hamiltonella (H), Rickettsia (R), and Cardinium (C) exist in field whiteflies, with single (H) and double (HC and HR) infections occurring frequently. Infection frequencies of Hamiltonella (always 100%) and Cardinium (29.50-34.38%) remained steady during seasonal progression. Rickettsia infection frequency in the cucumber whitefly population decreased from 64.47% in summer to 35.29% in winter. Significantly lower Rickettsia infection frequency (15.55%) was identified in cotton whitefly populations and was not subject to seasonal fluctuation. Nevertheless, Rickettsia had a significantly quantitative advantage in the symbiont community of whitefly individuals and populations from both cucumber and cotton field all through the seasons. Moreover, higher Portiera and Hamiltonella densities were found in HC and HR whitefly than in H whitefly, suggesting these symbionts may contribute to producing nutrients for their symbiont partners. These results provide ample cues to further explore the interactions between coexisting symbionts, the coevolutionary relationship between symbionts and host symbiont-induced effects on host plant use.


Asunto(s)
Hemípteros/microbiología , Microbiota , Rickettsia/aislamiento & purificación , Simbiosis , Animales , Bacterias/clasificación , Bacterias/genética , Bacterias/aislamiento & purificación , China , Cucumis sativus/parasitología , Gossypium/parasitología , Interacciones Microbianas , Rickettsia/clasificación , Rickettsia/genética , Estaciones del Año
10.
BMC Vet Res ; 17(1): 113, 2021 Mar 07.
Artículo en Inglés | MEDLINE | ID: mdl-33678176

RESUMEN

BACKGROUND: Pet dogs are important companion animals that share the environment within households, and play an important role in local community life. In addition, pet dogs also are reservoirs of zoonotic agents, including Rickettsia spp., thus increasing the risk of rickettsial infections in humans. It's meaningful to investigate the epidemiology of rickettsial agents in pet dogs, and make contribute to the surveillance of rickettsioses in human in China. RESULTS: In this study, a total of 496 pet dogs' blood samples and 343 ticks infested in pet dogs were collected, and the presence and prevalence of Rickettsia were determined by amplifying the partial gltA and 17-kDa genes, with an overall positive rate of 8.1 % in blood samples and 14.0 % in tick samples. In addition, the rrs, gltA, groEL, and ompA genes of rickettsial were also recovered to determine the species of Rickettsia detected furtherly. Sequencing blast and phylogenetic analyses revealed the presence of three human pathogenic Rickettsia species (Rickettsia raoultii, Candidatus Rickettsia tarasevichiae and Rickettsia felis) in samples associated with pet dogs. Moreover, all the sequences of Rickettsia that we obtained presented close relationship with others available in GenBank, and Rickettsia raoultii was the most predominant Rickettsia species infected in pet dogs' blood samples or in tick samples. CONCLUSIONS: This study provides the molecular epidemiology data about the Rickettsia spp. infection associated with pet dogs in urban areas of Harbin city. Three rickettisae species pathogenic to humans were identified from pet dogs' blood and the infested ticks in urban areas of Harbin city. Considering the intimate relationship between human and pets, these results indicate the potential transmission risk of human rickettisal infections from pet dogs through ectoparasites, and also highlighting that more attention should be paid to rickettsial infection in pet dogs and the infested ticks from the "One health" perspective.


Asunto(s)
Enfermedades de los Perros/microbiología , Ixodidae/microbiología , Infecciones por Rickettsia/veterinaria , Rickettsia/aislamiento & purificación , Animales , China/epidemiología , Enfermedades de los Perros/epidemiología , Perros , Femenino , Masculino , Rickettsia/clasificación , Rickettsia/genética , Infecciones por Rickettsia/sangre , Infecciones por Rickettsia/epidemiología , Infestaciones por Garrapatas/veterinaria
11.
Environ Microbiol ; 22(4): 1207-1221, 2020 04.
Artículo en Inglés | MEDLINE | ID: mdl-31997547

RESUMEN

The bacterium Rickettsia is found widely in phytophagous insects and often exerts profound effects on the phenotype and fitness of its hosts. Here, we decrypt a new, independent, phylogenetically ancient Torix Rickettsia endosymbiont found constantly in a laboratory line of an economically important insect Asia II 7, a putative species of the Bemisia tabaci whitefly complex (Hemiptera: Aleyrodidae), and occasionally in field whitefly populations. This new Rickettsia distributes throughout the body of its whitefly host. Genetically, compared to Rickettsia_bellii_MEAM1 found earlier in whiteflies, the new Rickettsia species has more gene families and pathways, which may be important factors in shaping specific symbiotic relationships. We propose the name 'Candidatus Rickettsia_Torix_Bemisia_tabaci (RiTBt)' for this new endosymbiont associated with whiteflies. Comparative genomic analyses indicate that RiTBi may be a relatively recent intruder in whiteflies given its low abundance in the field and relatively larger genome compared to Rickettsia_bellii_MEAM1.


Asunto(s)
Hemípteros/microbiología , Rickettsia/clasificación , Simbiosis , Animales , Asia , Femenino , Masculino , Fenotipo , Filogenia , Rickettsia/genética , Rickettsia/aislamiento & purificación , Rickettsia/fisiología
12.
Int J Syst Evol Microbiol ; 70(3): 1738-1750, 2020 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-31935173

RESUMEN

Over recent years, genomic information has increasingly been used for prokaryotic species definition and classification. Genome sequence-based alternatives to the gold standard DNA-DNA hybridization (DDH) relatedness have been developed, notably average nucleotide identity (ANI), which is one of the most useful measurements for species delineation in the genomic era. However, the strictly intracellar lifestyle, the few measurable phenotypic properties and the low level of genetic heterogeneity made the current standard genomic criteria for bacterial species definition inapplicable to Rickettsia species. We evaluated a range of whole genome sequence (WGS)-based taxonomic parameters to develop guidelines for the classification of Rickettsia isolates at genus and species levels. By comparing the degree of similarity of 74 WGSs from 31 Rickettsia species and 61 WGSs from members of three closely related genera also belonging to the order Rickettsiales (Orientia, 11 genomes; Ehrlichia, 22 genomes; and Anaplasma, 28 genomes) using digital DDH (dDDh) and ANI by orthology (OrthoANI) parameters, we demonstrated that WGS-based taxonomic information, which is easy to obtain and use, can serve for reliable classification of isolates within the Rickettsia genus and species. To be classified as a member of the genus Rickettsia, a bacterial isolate should exhibit OrthoANI values with any Rickettsia species with a validly published name of ≥83.63 %. To be classified as a new Rickettsia species, an isolate should not exhibit more than any of the following degrees of genomic relatedness levels with the most closely related species: >92.30 and >99.19 % for the dDDH and OrthoANI values, respectively. When applied to four rickettsial isolates of uncertain status, the above-described thresholds enabled their classification as new species in one case. Thus, we propose WGS-based guidelines to efficiently delineate Rickettsia species, with OrthoANI and dDDH being the most accurate for classification at the genus and species levels, respectively.


Asunto(s)
Genoma Bacteriano , Filogenia , Rickettsia/clasificación , Técnicas de Tipificación Bacteriana , ADN Bacteriano/genética , Genómica , Hibridación de Ácido Nucleico , Análisis de Secuencia de ADN
13.
Microbiol Immunol ; 64(1): 1-9, 2020 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-31549736

RESUMEN

It is well known that the mite Leptotrombidium scutellare carries the pathogen of scrub typhus, Orientia tsutsugamushi. However, our understanding of other bacterial endosymbionts of mites is limited. This study investigated the diversity of the obligate intracellular bacteria carried by L. scutellare using 16S rRNA gene amplicon analysis with next-generation sequencing. The results showed that the detected bacteria were classified into the genera Rickettsia, Wolbachia, and Rickettsiella and an unknown genus of the order Rickettsiales. For further classification of the detected bacteria, a representative read that was most closely related to the assigned taxonomic classification was subjected to homology search and phylogenic analysis. The results showed that some bacteria of the genus Rickettsia were identical or very close to the human pathogens Rickettsia akari, Rickettsia aeschlimannii, Rickettsia felis, and Rickettsia australis. The genetic distance between the genus Wolbachia bacteria in the present study and in previous reports is highly indicative that the bacteria in the present study can be classified as a new taxon of Wolbachia. This study detected obligate intracellular bacteria from unfed mites; thus, the mites did not acquire bacteria from infected animals or any other infectious sources. Finally, the present study demonstrated that various and novel bacterial endosymbionts of mites, in addition to O. tsutsugamushi, might uniquely evolve with the host mites throughout overlapping generations of the mite life cycle. The roles of the bacteria in mites and their pathogenicity should be further examined in studies based on bacterial isolation.


Asunto(s)
Bacterias/clasificación , Fenómenos Fisiológicos Bacterianos , Biodiversidad , Larva/microbiología , Ácaros/microbiología , Filogenia , Simbiosis , Trombiculidae/microbiología , Animales , Bacterias/genética , Bacterias/aislamiento & purificación , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Estadios del Ciclo de Vida , Orientia tsutsugamushi , ARN Ribosómico 16S/genética , Rickettsia/clasificación , Rickettsia/genética , Tifus por Ácaros/microbiología , Análisis de Secuencia , Wolbachia/clasificación
14.
Parasitol Res ; 119(9): 3083-3091, 2020 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-32683558

RESUMEN

Many enzootic life cycles involving wild animals and non-nidicolous ixodids are still unknown. Therefore, the aim of this study was to report the identified tick species collected from seven different animal species (red deer, brown bear, gray wolf, Eurasian lynx, red fox, European hare, and Mediterranean spur-thighed tortoise) living in the wild in Turkey and to investigate the presence of a wide range of tick-borne microorganisms in the tick samples obtained from these animals. The collected ticks (n = 98) were identified as Dermacentor reticulatus, Haemaphysalis parva, Hyalomma aegyptium, Hyalomma excavatum, Hyalomma marginatum, Ixodes ricinus, and Rhipicephalus turanicus. All engorged ticks collected from the wild animals and unfed larvae (n = 30) obtained from a single Rh. turanicus female were also analyzed individually for tick-borne bacterial and protozoan agents via PCR-sequencing. The molecular analyses revealed the presence of Babesia sp. tavsan2, Theileria capreoli, four Hepatozoon spp. (Hep. ursi, Hep. canis, Hep. felis, and Hepatozoon sp.), Hemolivia mauritanica, and three SFG rickettsiae (Candidatus Rickettsia barbariae, Ca. R. goldwasserii, and Rickettsia hoogstraalii) in the collected ticks. This represents the first report of Th. capreoli, Hep. ursi, and Ca. R. barbariae in ticks from Turkey. The evolutionary relationships of microbes in the different host and tick species are also discussed. Multiple novel tick-host associations in the tick life cycle were also revealed.


Asunto(s)
Animales Salvajes/parasitología , Babesia/aislamiento & purificación , Rickettsia/aislamiento & purificación , Theileria/aislamiento & purificación , Enfermedades por Picaduras de Garrapatas/veterinaria , Garrapatas/microbiología , Garrapatas/parasitología , Animales , Babesia/clasificación , Babesia/genética , Femenino , Rickettsia/clasificación , Rickettsia/genética , Theileria/clasificación , Theileria/genética , Enfermedades por Picaduras de Garrapatas/microbiología , Enfermedades por Picaduras de Garrapatas/parasitología , Garrapatas/fisiología , Turquía
15.
Parasitol Res ; 119(7): 2047-2057, 2020 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-32382991

RESUMEN

Bacteria belonging to the genus Rickettsia are known as causative agents of vector-borne zoonotic diseases, such as spotted fevers, epidemic typhus and endemic typhus. Different species of ticks, mites and fleas could act as reservoirs and arthropod vectors of different pathogenic Rickettsia species. The aim of this work was to establish active surveillance of Rickettsia spp. in mites, ticks and fleas collected from small mammals (rodents and shrews) in Eastern Slovakia. A total of 964 animal ear biopsies, 871 mites, 667 ticks and 743 fleas were collected from small mammals in the Kosice region, Eastern Slovakia. All specimens were identified using specialized taxonomic keys, and were conserved in ethanol until DNA extraction was performed. After DNA extraction, identification of Rickettsia species was performed by PCR-based methods. The total prevalence of rickettsiae from ear biopsies was 4.6% (95% CI, 3.2-5.9), in tested mites 9.3% (95% CI, 7.4-11.2), 17.2% (95% CI, 14.3-20.1) in I. ricinus ticks and 3.5% (95% CI, 2.2-4.8) in fleas. Sequence analysis of the partial gltA gene and Rickettsia helvetica-, Rickettsia slovaca-, Rickettsia raoultii- species specific real-time PCR tests revealed the presence of R. helvetica, R. slovaca, unidentified Rickettsia and rickettsial endosymbionts. These pathogenic and symbiotic species were confirmed in the following ectoparasite species-Laelaps jettmari, Haemogamasus nidi, Laelaps agilis and Eulaelaps stabularis mites, Ixodes ricinus ticks, Ctenophthalmus solutus, C. assimilis and Megabothris turbidus fleas infesting host-Apodemus agrarius, A. flavicollis, Microtus arvalis and Myodes glareolus small mammals. These results confirm the circulation of R. helvetica, R. slovaca, unidentified Rickettsia and rickettsial endosymbionts in mites, ticks and fleas collected on small mammals in the Kosice region, Eastern Slovakia.


Asunto(s)
Ácaros/microbiología , Infecciones por Rickettsia/transmisión , Roedores/parasitología , Musarañas/parasitología , Siphonaptera/microbiología , Garrapatas/microbiología , Enfermedades Transmitidas por Vectores/microbiología , Animales , ADN Bacteriano/genética , Infestaciones Ectoparasitarias/microbiología , Rickettsia/clasificación , Rickettsia/genética , Rickettsia/fisiología , Infecciones por Rickettsia/epidemiología , Eslovaquia/epidemiología , Enfermedades Transmitidas por Vectores/epidemiología , Enfermedades Transmitidas por Vectores/transmisión
16.
Exp Appl Acarol ; 80(2): 247-256, 2020 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-31953633

RESUMEN

PCR-based single-strand conformation polymorphism (SSCP) analyses combined with DNA sequencing of the prokaryotic 16S ribosomal (r) RNA gene encompassing the hypervariable V4 region was used to determine the bacterial composition of Rocky Mountain wood ticks (Dermacentor andersoni) attached to Richardson's ground squirrels (Urocitellus richardsonii) and questing on vegetation in southern Saskatchewan, Canada. The bacteria present in questing adult ticks from Saskatchewan Landing Provincial Park included Rickettsia peacockii, a Francisella-like endosymbiont (FLE) and an Arsenophonus-like endosymbiont. Bacteria in the adult and nymphal ticks attached to U. richardsonii collected from Beechy included R. peacockii, a FLE, and several other genera (e.g., Ralstonia, Sphingobium, Comamonas and Pseudomonas). The bacteria detected in D. andersoni in the present study are consistent with the findings of other studies that have characterized the microbiome of this tick species in the USA using next generation sequencing. This result demonstrates that the SSCP-based approach used in this study is cost- and time-effective for examining bacterial composition in ticks.


Asunto(s)
Dermacentor/microbiología , Polimorfismo Conformacional Retorcido-Simple , Rickettsia/clasificación , Animales , Canadá , ADN Bacteriano/genética , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
17.
Exp Appl Acarol ; 80(3): 339-348, 2020 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-31925589

RESUMEN

Ixodid ticks transmit many obligate intracellular Rickettsial species. Several previous studies have identified Rickettsia species in the northeastern and southern part of China, but few reports on the prevalence of infection of spotted fever group Rickettsiae (SFGR) in ticks in southwest China are available. Here, we investigated SFGR in 394 adult ticks of five species including Dermacentor nuttalli, Dermacentor silvarum, Haemaphysalis longicornis, Ixodes sinensis and Ixodes persulcatus, collected in the border region between China and Burma in Yunnan Province. PCR was used to detect the presence of the citrate synthase (gltA) gene of Rickettsia species. SFGR was found in 12.1% (15/124) of I. persulcatus ticks, which was significantly higher than the 7.2% (7/97) positive D. nuttalli, 5.4% (3/56) D. silvarum, 5.6% (4/72) H. longicornis and 4.4 (2/45) I. sinensis. A portion of the gltA and ompA gene data subjected to phylogenetic analysis revealed that the detected SFGR clustered into two species, Rickettsia raoultii and the new Rickettsia species Candidatus Rickettsia jingxinensis. Detection of both Rickettsia spp. in this region indicates a potential public health threat posed by SFGR infection in Yunnan Province.


Asunto(s)
Ixodidae/microbiología , Filogenia , Rickettsia/aislamiento & purificación , Animales , China , Genes Bacterianos , Rickettsia/clasificación , Rickettsiosis Exantemáticas
18.
Emerg Infect Dis ; 25(12): 2315-2317, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-31742525

RESUMEN

We found Rickettsia parkeri in Amblyomma ovale ticks collected in Veracruz, Mexico, in 2018. We sequenced gene segments of gltA, htrA, sca0, and sca5; phylogenetic reconstruction revealed near-complete identity with R. parkeri strain Atlantic Rainforest. Enhanced surveillance is needed in Mexico to determine the public health relevance of this bacterium.


Asunto(s)
Rickettsia/clasificación , Rickettsia/genética , Infestaciones por Garrapatas/epidemiología , Garrapatas/microbiología , Animales , Femenino , Genes Bacterianos , Masculino , México/epidemiología , Filogenia , Vigilancia en Salud Pública
19.
Emerg Infect Dis ; 25(4): 836-838, 2019 04.
Artículo en Inglés | MEDLINE | ID: mdl-30882330

RESUMEN

We report Rickettsia parkeri and Candidatus Rickettsia andeanae in ticks of the Amblyomma maculatum group collected from dogs in Sonora, Mexico. Molecular characterization of these bacteria was accomplished by DNA amplification and sequence analysis of portions of the rickettsial genes gltA, htrA, ompA, and ompB.


Asunto(s)
Rickettsia , Infestaciones por Garrapatas/epidemiología , Garrapatas/microbiología , Animales , Genes Bacterianos , Humanos , México/epidemiología , Tipificación Molecular , Reacción en Cadena de la Polimerasa , Rickettsia/clasificación , Rickettsia/genética , Rickettsia/aislamiento & purificación , Análisis de Secuencia de ADN
20.
Emerg Infect Dis ; 25(5): 992-995, 2019 05.
Artículo en Inglés | MEDLINE | ID: mdl-31002060

RESUMEN

PCR amplification indicated the minimum infection rate of Rickettsia spp. was 0.66% in Haemaphysalis longicornis ticks collected from Shandong Province, China. Phylogenetic analysis based on the rrs, gltA, ompA, and ompB genes indicated that the ticks carried R. japonica, Candidatus Rickettsia longicornii, and a novel Rickettsia species related to R. canadensis.


Asunto(s)
Rickettsia/clasificación , Rickettsia/genética , Garrapatas/microbiología , Animales , China/epidemiología , ADN Bacteriano , Humanos , Filogenia , Reacción en Cadena de la Polimerasa , Vigilancia en Salud Pública , Enfermedades Transmitidas por Vectores/epidemiología , Enfermedades Transmitidas por Vectores/microbiología
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