Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 250
Filtrar
1.
Nature ; 632(8023): 95-100, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-38987602

RESUMEN

Subtropical gyre (STG) depth and strength are controlled by wind stress curl and surface buoyancy forcing1,2. Modern hydrographic data reveal that the STG extends to a depth of about 1 km in the Northwest Atlantic, with its maximum depth defined by the base of the subtropical thermocline. Despite the likelihood of greater wind stress curl and surface buoyancy loss during the Last Glacial Maximum (LGM)3, previous work suggests minimal change in the depth of the glacial STG4. Here we show a sharp glacial water mass boundary between 33° N and 36° N extending down to between 2.0 and 2.5 km-approximately 1 km deeper than today. Our findings arise from benthic foraminiferal δ18O profiles from sediment cores in two depth transects at Cape Hatteras (36-39° N) and Blake Outer Ridge (29-34° N) in the Northwest Atlantic. This result suggests that the STG, including the Gulf Stream, was deeper and stronger during the LGM than at present, which we attribute to increased glacial wind stress curl, as supported by climate model simulations, as well as greater glacial production of denser subtropical mode waters (STMWs). Our data suggest (1) that subtropical waters probably contributed to the geochemical signature of what is conventionally identified as Glacial North Atlantic Intermediate Water (GNAIW)5-7 and (2) the STG helped sustain continued buoyancy loss, water mass conversion and northwards meridional heat transport (MHT) in the glacial North Atlantic.


Asunto(s)
Cubierta de Hielo , Agua de Mar , Movimientos del Agua , Océano Atlántico , Modelos Climáticos , Foraminíferos/aislamiento & purificación , Sedimentos Geológicos/parasitología , Golfo de México , Historia Antigua , Calor , Agua de Mar/análisis , Agua de Mar/química , Viento
2.
Proc Natl Acad Sci U S A ; 118(41)2021 10 12.
Artículo en Inglés | MEDLINE | ID: mdl-34607950

RESUMEN

Among the organisms that spread into and flourish in Arctic waters with rising temperatures and sea ice loss are toxic algae, a group of harmful algal bloom species that produce potent biotoxins. Alexandrium catenella, a cyst-forming dinoflagellate that causes paralytic shellfish poisoning worldwide, has been a significant threat to human health in southeastern Alaska for centuries. It is known to be transported into Arctic regions in waters transiting northward through the Bering Strait, yet there is little recognition of this organism as a human health concern north of the Strait. Here, we describe an exceptionally large A. catenella benthic cyst bed and hydrographic conditions across the Chukchi Sea that support germination and development of recurrent, locally originating and self-seeding blooms. Two prominent cyst accumulation zones result from deposition promoted by weak circulation. Cyst concentrations are among the highest reported globally for this species, and the cyst bed is at least 6× larger in area than any other. These extraordinary accumulations are attributed to repeated inputs from advected southern blooms and to localized cyst formation and deposition. Over the past two decades, warming has likely increased the magnitude of the germination flux twofold and advanced the timing of cell inoculation into the euphotic zone by 20 d. Conditions are also now favorable for bloom development in surface waters. The region is poised to support annually recurrent A. catenella blooms that are massive in scale, posing a significant and worrisome threat to public and ecosystem health in Alaskan Arctic communities where economies are subsistence based.


Asunto(s)
Dinoflagelados/crecimiento & desarrollo , Dinoflagelados/metabolismo , Floraciones de Algas Nocivas/fisiología , Neurotoxinas/metabolismo , Intoxicación por Mariscos , Alaska , Regiones Árticas , Cambio Climático , Ecosistema , Sedimentos Geológicos/parasitología , Calor , Humanos , Cubierta de Hielo , Salud Pública
3.
Parasitol Res ; 123(5): 214, 2024 May 20.
Artículo en Inglés | MEDLINE | ID: mdl-38767751

RESUMEN

Currently, research on apicomplexan Sarcocystis parasites is mainly carried out by analyzing animal carcasses. However, environmental studies would not only allow faster detection of possible sources of infection but also avoid the use of animals for investigations. Therefore, in the current study, we aimed to identify tested Sarcocystis species in sediment collected from water bodies located in the southeastern Baltic countries. A total of 99 sediment samples were collected during the summer from different types of water bodies in Estonia, Latvia, Lithuania, and Poland. Species-specific nested PCR targeting cox1 gene was used for the detection of selected Sarcocystis species (S. cruzi, S. bovifelis, S. hirsuta, S. arieticanis, S. tenella, S. capracanis, S. miescheriana, and S. bertrami) infecting livestock. The results showed a statistically lower (p < 0.05) occurrence of Sarcocystis parasites in Estonia (50%) compared to three countries, where the detection rate of Sarcocystis spp. DNA was remarkably higher, ranging from 88 to 100%. Among Sarcocystis species tested, S. cruzi (83.8%) and S. arieticanis (55.6%) using cattle and sheep as their intermediate hosts were most commonly identified. The detection rates of some of the analyzed Sarcocystis species were significantly different in southeastern Baltic countries. It is discussed that the detection rates of certain Sarcocystis species depend not only on the number of animals per 1 km2 but also on various ecological factors and farming practices that differ in the amount of contact domestic animals have with predators and the potential for animals to become infected through natural water or food sources.


Asunto(s)
Ecosistema , Sedimentos Geológicos , Sarcocystis , Sarcocystis/genética , Sarcocystis/aislamiento & purificación , Sarcocystis/clasificación , Animales , Sedimentos Geológicos/parasitología , Polonia , Ovinos , Reacción en Cadena de la Polimerasa , Sarcocistosis/parasitología , Sarcocistosis/veterinaria , Sarcocistosis/epidemiología , Bovinos , Lituania/epidemiología , Países Bálticos , Biodiversidad , ADN Protozoario/genética , Letonia/epidemiología , Estonia
4.
Int J Mol Sci ; 22(14)2021 Jul 07.
Artículo en Inglés | MEDLINE | ID: mdl-34298944

RESUMEN

Energetic metabolism is essential in maintaining the viability of all organisms. Resting cysts play important roles in the ecology of dinoflagellates, particularly for harmful algal blooms (HABs)-causative species. However, the energetic metabolism underlying the germination potency maintenance of resting cysts of dinoflagellate have been extremely scarce in studies from physiological and, particularly, molecular perspectives. Therefore, we used the cosmopolitan Scrippsiella trochoidea as a representative of HABs-forming and cyst-producing dinoflagellates in this work to obtain novel insights into the molecular mechanisms, regulating the energetic metabolism in dinoflagellate resting cysts, under different physical condition. As the starting step, we established a cDNA subtractive library via suppression subtractive hybridization (SSH) technology, from which we screened an incomplete sequence for the ß subunit of ATP synthase gene (ß-F1-ATPase), a key indicator for the status of cell's energetic metabolism. The full-length cDNA of ß-F1-ATPase gene from S.trochoidea (Stß-F1-ATPase) was then obtained via rapid amplification of cDNA ends (RACE) (Accession: MZ343333). Our real-time qPCR detections, in vegetative cells and resting cysts treated with different physical conditions, revealed that (1) the expression of Stß-F1-ATPase in resting cysts was generally much lower than that in vegetative cells, and (2) the Stß-F1-ATPase expressions in the resting cysts under darkness, lowered temperature, and anoxia, and during an extended duration of dormancy, were significantly lower than that in cysts under the condition normally used for culture-maintaining (a 12 h light:12 h dark cycle, 21 °C, aerobic, and newly harvested). Our detections of the viability (via Neutral Red staining) and cellular ATP content of resting cysts, at the conditions corresponding to the abovementioned treatments, showed that both the viability and ATP content decreased rapidly within 12 h and then maintained at low levels within the 4-day experimentation under all the three conditions applied (4 °C, darkness, and anoxia), which are well in accordance with the measurements of the transcription of Stß-F1-ATPase. These results demonstrated that the energy consumption of resting cysts reaches a low, but somehow stable, level within a short time period and is lower at low temperature, darkness, and anoxia than that at ambient temperature. Our work provides an important basis for explaining that resting cysts survive long-term darkness and low temperature in marine sediments from molecular and physiological levels.


Asunto(s)
Dinoflagelados/genética , Floraciones de Algas Nocivas/fisiología , Oscuridad , Sedimentos Geológicos/parasitología , Temperatura
5.
J Eukaryot Microbiol ; 67(3): 393-402, 2020 05.
Artículo en Inglés | MEDLINE | ID: mdl-32003917

RESUMEN

Labyrinthulomycetes are mostly fungus-like heterotrophic protists that absorb nutrients in an osmotrophic or phagotrophic manner. Members of order Labyrinthulida produce unique membrane-bound ectoplasmic networks for movement and feeding. Among the various types of labyrinthulids' food substrates, diatoms play an important role due to their ubiquitous distribution and abundant biomass. We isolated and cultivated new diatom consuming Labyrinthulida strains from shallow coastal marine sediments. We described Labyrinthula diatomea n. sp. that differs from all known labyrinthulids in both molecular and morphological features. We provided strain delimitation within the genus Labyrinthula based on ITS sequences via haplotype network construction and compared it with previous phylogenetic surveys.


Asunto(s)
Diatomeas/clasificación , Diatomeas/citología , Sedimentos Geológicos/parasitología , Análisis de Secuencia de ADN/métodos , ADN de Algas/genética , Diatomeas/aislamiento & purificación , Microscopía , Filogenia , Subunidades Ribosómicas Pequeñas de Eucariotas/genética
6.
Microb Ecol ; 79(2): 443-458, 2020 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-31432244

RESUMEN

Arcellinida (testate lobose amoebae) are widely used as bio-indicators of lacustrine environmental change. Too much obscuring organic material in a gridded wet Petri dish preparation makes it difficult to observe all specimens present and slows quantification as the organic material has to be carefully worked through with a dissection probe. Chemical deflocculation using soda ash (Na2CO3·H2O), potassium hydroxide (KOH), or sodium hexametaphosphate ((NaPO3)6) has previously been shown to disaggregate and reduce organic content in lake sediments, but to date, no attempt has been made to comparatively evaluate the efficiency of these deflocculants in disaggregating organic content and their impact on Arcellinida analysis in lacustrine sediments. Here, we assess the effectiveness of soda ash, potassium hydroxide, and sodium hexametaphosphate treatments on removing organic content and the impact of those digestions on Arcellinida preservation in 126 sample aliquots subdivided from three sediment samples (YK-20, YK-25, and YK-57) collected from three lakes near Yellowknife, Northwest Territories, Canada. Following treatment, cluster analysis and Bray-Curtis dissimilarity matrix (BCDM) were utilized to determine whether treatments resulted in dissolution-driven changes in Arcellinida assemblage composition. Observed Arcellinida tests in aliquots increased drastically after treatment of organic-rich samples (47.5-452.7% in organic-rich aliquots and by 14.8% in aliquots with less organic matter). The BCDM results revealed that treatment with 5% KOH resulted in the highest reduction in observed organic content without significantly affecting Arcellinida assemblage structure, while soda ash and sodium hexametaphosphate treatments resulted in marginal organic matter reduction and caused severe damage to the arcellinidan tests.


Asunto(s)
Floculación , Sedimentos Geológicos/parasitología , Lobosea/aislamiento & purificación , Técnicas Microbiológicas/instrumentación , Lagos/parasitología , Territorios del Noroeste , Parasitología/métodos
7.
Microb Ecol ; 79(4): 882-897, 2020 May.
Artículo en Inglés | MEDLINE | ID: mdl-31796996

RESUMEN

Rain fed granite rock basins are ancient geological landforms of worldwide distribution and structural simplicity. They support habitats that can switch quickly from terrestrial to aquatic along the year. Diversity of animals and plants, and the connexion between communities in different basins have been widely explored in these habitats, but hardly any research has been carried out on microorganisms. The aim of this study is to provide the first insights on the diversity of eukaryotic microbial communities from these environments. Due to the ephemeral nature of these aquatic environments, we predict that the granitic basins should host a high proportion of dormant microeukaryotes. Based on an environmental DNA diversity survey, we reveal diverse communities with representatives of all major eukaryotic taxonomic supergroups, mainly composed of a diverse pool of low abundance OTUs. Basin communities were very distinctive, with alpha and beta diversity patterns non-related to basin size or spatial distance respectively. Dissimilarity between basins was mainly characterised by turnover of OTUs. The strong microbial eukaryotic heterogeneity observed among the basins may be explained by a complex combination of deterministic factors (diverging environment in the basins), spatial constraints, and randomness including founder effects. Most interestingly, communities contain organisms that cannot coexist at the same time because of incompatible metabolic requirements, thus suggesting the existence of a pool of dormant organisms whose activity varies along with the changing environment. These organisms accumulate in the pools, which turns granitic rock into high biodiversity microbial islands whose conservation and study deserve further attention.


Asunto(s)
Eucariontes/fisiología , Sedimentos Geológicos/microbiología , Sedimentos Geológicos/parasitología , Dióxido de Silicio , Eucariontes/aislamiento & purificación , Microbiota , Micobioma , Lluvia , España
9.
Bull Environ Contam Toxicol ; 105(5): 770-776, 2020 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-32504161

RESUMEN

This paper investigates the concentrations of PCBs in the water and sediment media and its bio-concentration in the fish host-parasite bentho-pelagic food chain in Epe lagoon. Samples of water, sediment, plankton, mollusks, fish and intestinal helminth parasites were collected from three stations (Oriba, Imode and Ikosi) in Epe Lagoon. Concentration of total PCBs in the surface water and sediment across the stations ranges from 3.20 to 6.00 ppb and 405.50-860.70 ppb respectively. Imode had the highest concentrations. The plankton bio-concentrates most PCBs in Ikosi (286.70 ppb) followed by Imode concentration (165.40 ppb), then Oribo (92.60 ppb) with total bio-concentration of 544.60 ppb. Surface water temperature negatively and strongly correlates with PCBs in the plankton. The planktons bio-concentrates total PCBs 44 times than that in the surface water. Chrysichthys nigrodigitatus bio-concentrates total PCBs 48 times than that in the surface water. Bioaccumulation of PCBs in human food chain could pose health risk.


Asunto(s)
Bioacumulación , Bagres/metabolismo , Monitoreo del Ambiente/métodos , Sedimentos Geológicos/química , Helmintos/metabolismo , Bifenilos Policlorados/análisis , Contaminantes Químicos del Agua/análisis , Animales , Bagres/parasitología , Cadena Alimentaria , Agua Dulce/química , Agua Dulce/parasitología , Sedimentos Geológicos/parasitología , Humanos , Nigeria , Plancton/metabolismo , Bifenilos Policlorados/metabolismo , Contaminantes Químicos del Agua/metabolismo
10.
Microb Ecol ; 77(2): 277-287, 2019 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-29951743

RESUMEN

Bacterioplankton are both primary producers and primary consumers in aquatic ecosystems, which were commonly investigated to reflect environmental changes, evaluate primary productivity, and assess biogeochemical cycles. However, there is relatively less understanding of their responses to anthropogenic disturbances such as constructions of dams/tunnels/roads that may significantly affect the aquatic ecosystem. To fill such gap, this study focused on the bacterioplankton communities' diversity and turnover during a tunnel construction across an urban lake (Lake Donghu, Wuhan, China), and five batches of samples were collected within 2 months according to the tunnel construction progress. Results indicated that both resources and predator factors contributed significant to the variations of bacterioplankton communities, but the closed area and open areas showed different diversity patterns due to the impacts of tunnel construction. Briefly, the phytoplankton, TN, and TP in water were still significantly correlated with the bacterioplankton composition and diversity like that in normal conditions. Additionally, the organic matter, TN, and NH4-N in sediments also showed clear effects on the bacterioplankton. However, the predator effects on the bacterioplankton in the closed-off construction area mainly derived from large zooplankton (i.e., cladocerans), while small zooplankton such as protozoa and rotifers are only responsible for weak predator effects on the bacterioplankton in the open areas. Further analysis about the ecological driving forces indicated that the bacterioplankton communities' turnover during the tunnel construction was mainly governed by the homogeneous selection due to similar environments within the closed area or the open areas at two different stages. This finding suggests that bacterioplankton communities can quickly adapt to the environmental modifications resulting from tunnel construction activities. This study can also give references to enhance our understanding on bacterioplankton communities' response to ecological and environmental changes due to intensification of construction and urbanization in and around lake ecosystems.


Asunto(s)
Bacterias/aislamiento & purificación , Lagos/microbiología , Plancton/aislamiento & purificación , Animales , Bacterias/clasificación , Bacterias/genética , Biodiversidad , China , Sedimentos Geológicos/microbiología , Sedimentos Geológicos/parasitología , Lagos/parasitología , Filogenia , Plancton/clasificación , Plancton/genética , Zooplancton/clasificación , Zooplancton/genética , Zooplancton/aislamiento & purificación
11.
Korean J Parasitol ; 57(6): 575-580, 2019 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-31914507

RESUMEN

The aim of this study is to determine the species of parasites that affected the inhabitants of the city of Acre on the coast of the eastern Mediterranean during the Ottoman Period. This is the first archaeological study of parasites in the Ottoman Empire. We analysed sediment from a latrine dating to the early 1800s for the presence of helminth eggs and protozoan parasites which caused dysentery. The samples were examined using light microscopy and enzyme-linked immunosorbent assay (ELISA) kits. We found evidence for roundworm (Ascaris lumbricoides), whipworm (Trichuris trichiura), fish tapeworm (Dibothriocephalus sp.), Taenia tapeworm (Taenia sp.), lancet liver fluke (Dicrocoelium dendriticum), and the protozoa Giardia duodenalis and Entamoeba histolytica. The parasite taxa recovered demonstrate the breadth of species present in this coastal city. We consider the effect of Ottoman Period diet, culture, trade and sanitation upon risk of parasitism in this community living 200 years ago.


Asunto(s)
Sedimentos Geológicos/parasitología , Helmintos/aislamiento & purificación , Parasitosis Intestinales/historia , Parasitosis Intestinales/parasitología , Parasitología/historia , Animales , Helmintos/clasificación , Helmintos/citología , Historia del Siglo XVIII , Israel , Óvulo/citología
12.
Korean J Parasitol ; 57(6): 595-599, 2019 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-31914510

RESUMEN

In this study we take a closer look at the diseases that afflicted Japanese police officers who were stationed in a remote mountainous region of Taiwan from 1921 to 1944. Samples were taken from the latrine at the Huabanuo police outpost, and analyzed for the eggs of intestinal parasites, using microscopy and ELISA. The eggs of Eurytrema sp., (possibly E. pancreaticum), whipworm and roundworm were shown to be present. True infection with Eurytrema would indicate that the policemen ate uncooked grasshoppers and crickets infected with the parasite. However, false parasitism might also occur if the policemen ate the uncooked intestines of infected cattle, and the Eurytrema eggs passed through the human intestines. These findings provide an insight into the diet and health of the Japanese colonists in Taiwan nearly a century ago.


Asunto(s)
Infecciones por Cestodos/parasitología , Infecciones por Cestodos/veterinaria , Sedimentos Geológicos/parasitología , Óvulo/citología , Platelmintos/aislamiento & purificación , Animales , Bovinos , Enfermedades de los Bovinos/historia , Enfermedades de los Bovinos/parasitología , Infecciones por Cestodos/historia , Historia del Siglo XX , Humanos , Parasitología/historia , Platelmintos/citología , Taiwán
13.
Korean J Parasitol ; 57(6): 613-619, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-31914513

RESUMEN

Paleoparasitological analysis was carried on 4 Merovingian skeletons, dated from the late-5th to the late-9th centuries, and recovered in the church of Saint-Martin-au-Val in Chartres (Center region, France). The corpses were buried in stone sarcophagi, which were still sealed at the time of excavation. Parasite marker extraction was conducted on sediment samples taken from the abdominal and pelvic regions, but also on samples taken from under the head and the feet as control samples. Microscopic observation revealed the presence of 3 gastrointestinal parasites, namely the roundworm (Ascaris lumbricoides), the whipworm (Trichuris trichiura) and the fish tapeworm (genus Diphyllobothrium). This analysis contributes to a better knowledge of the health status and the lifestyle of ancient medieval populations during the Merovingian period, for which very few paleoparasitological data were available, up until now. It demonstrates the presence of the fish tapeworm for the first time during this period.


Asunto(s)
Ascariasis/historia , Difilobotriosis/historia , Tricuriasis/historia , Animales , Arqueología/historia , Ascariasis/parasitología , Ascaris lumbricoides/citología , Ascaris lumbricoides/aislamiento & purificación , Cadáver , Difilobotriosis/parasitología , Diphyllobothrium/citología , Diphyllobothrium/aislamiento & purificación , Francia , Sedimentos Geológicos/parasitología , Historia Antigua , Humanos , Óvulo/citología , Paleopatología , Parasitología/historia , Tricuriasis/parasitología , Trichuris/citología , Trichuris/aislamiento & purificación
14.
J Eukaryot Microbiol ; 65(6): 750-772, 2018 11.
Artículo en Inglés | MEDLINE | ID: mdl-29575394

RESUMEN

A study of modern sediment from the Western Arctic has revealed the presence of a distinctive brown-colored cyst with a spherical central body bearing unbranched processes that are usually solid with a small basal pericoel. Distinctive barbs project from some processes, and process tips are usually minutely expanded into conjoined barbs. The archeopyle is apical and saphopylic. This cyst corresponds to Islandinium? cezare morphotype 2 of Head et al. (2001, J. Quat. Sci., 16:621). Phylogenetic analyses based on the small and large subunit rRNA genes infer close relationship with Islandinium minutum, the type of which is that of the genus. Re-examination of specimens of I. minutum reveals the presence of minute barbs on its processes, but differences with Islandinium? cezare morphotype 2 remain based on size, process distribution, and barb development. Furthermore, the internal transcribed spacer shows I. minutum to be distinct from this morphotype. On the basis of these small but discrete differences, we propose the new subspecies Islandinium minutum subsp. barbatum subsp. nov. Molecular sequencing of other cysts encountered, namely Echinidinium karaense, an unidentified flattened cyst, and "Polykrikos quadratus", places them in the Monovela clade, the latter showing greater morphological variability than previously thought.


Asunto(s)
ADN Ribosómico/genética , Dinoflagelados/clasificación , Dinoflagelados/citología , Dinoflagelados/genética , Filogenia , Esporas Protozoarias/citología , Regiones Árticas , ADN Protozoario/genética , Dinoflagelados/aislamiento & purificación , Sedimentos Geológicos/parasitología , Microscopía Electrónica de Rastreo , ARN Ribosómico 18S/genética , Agua de Mar/parasitología , Análisis de Secuencia de ADN
15.
Microb Ecol ; 76(3): 680-694, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-29504072

RESUMEN

Arcellinida (testate lobose amoebae), a group of benthic protists, were examined from 46 sediment-water interface samples collected from oligotrophic Oromocto Lake, New Brunswick, Canada. To assess (1) assemblage homogeneity at a sub-meter spatial scale and (2) the necessity for collecting samples from multiple stations during intra-lake surveys; multiple samples were collected from three stations (quadrats 1, 2, and 3) across the north basin of Oromocto Lake, with quadrat 1 (n = 16) being the furthest to the west, quadrat 2 (n = 15) situated closer to the center of the basin, and quadrat 3 (n = 15) positioned 300 m south of the mouth of Dead Brook, an inlet stream. Results from cluster analysis and non-metric multidimensional scaling (NMDS) analysis identified two major Arcellinida assemblages, A1 and A2, the latter containing two sub-assemblages (A2a and A2b). Redundancy analysis and variance partitioning results indicated that seven statistically significant environmental variables (K, S, Sb, Ti, Zn, Fe, and Mn) explained 41.5% of the total variation in the Arcellinida distribution. Iron, Ti and K, indicators of detrital runoff, had the greatest influence on assemblage variance. The results of this study reveal that closely spaced samples (~ 10 cm) in an open-water setting are comprised of homogenous arcellinidan assemblages, indicating that replicate sampling is not required. The results, however, must be tempered with respect to the various water properties and physical characteristics that comprise individual lakes as collection of several samples may likely be necessary when sampling multiple sites of a lake basin characterized by varying water depths (e.g., littoral zone vs. open water), or lakes impacted by geogenic or anthropogenic stressors (e.g., eutrophication, or industrial contamination).


Asunto(s)
Amoeba/aislamiento & purificación , Lagos/parasitología , Amoeba/clasificación , Amoeba/genética , Biodiversidad , Canadá , Monitoreo del Ambiente , Sedimentos Geológicos/química , Sedimentos Geológicos/parasitología , Hierro/análisis , Lagos/química , Filogenia
16.
Microb Ecol ; 76(3): 584-587, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-29492594

RESUMEN

Achromatium is the largest freshwater bacterium known to date and easily recognised by conspicuous calcite bodies filling the cell volume. Members of this genus are highly abundant in diverse aquatic sediments and may account for up to 90% of the bacterial biovolume in the oxic-anoxic interfaces. The high abundance implies that Achromatium is either rapidly growing or hardly prone to predation. As Achromatium is still uncultivated and does not appear to grow fast, one could assume that the cells might escape predation by their unusual shape and composition. However, we observed various members of the meiofauna grazing or parasitizing on Achromatium. By microphotography, we documented amoebae, ciliates, oligochetes and plathelminthes having Achromatium cells ingested. Some Achromatium cells harboured structures resembling sporangia of parasitic fungi (chytrids) that could be stained with the chitin-specific dye Calcofluor White. Many Achromatia carried prokaryotic epibionts in the slime layer surrounding the cells. Their regular distribution over the cell might indicate that they are commensalistic rather than harming their hosts. In conclusion, we report on various interactions of Achromatium with the sediment community and show that although Achromatium cells are a crispy diet, full of calcite bodies, predators do not spare them.


Asunto(s)
Sedimentos Geológicos/microbiología , Bacterias Aerobias Gramnegativas/crecimiento & desarrollo , Lagos/microbiología , Amoeba/fisiología , Animales , Cilióforos/fisiología , Sedimentos Geológicos/parasitología , Bacterias Aerobias Gramnegativas/clasificación , Bacterias Aerobias Gramnegativas/genética , Bacterias Aerobias Gramnegativas/aislamiento & purificación , Lagos/parasitología , Oligoquetos/fisiología
17.
J Phycol ; 54(4): 447-460, 2018 08.
Artículo en Inglés | MEDLINE | ID: mdl-29696650

RESUMEN

Large-scale environmental disturbances may impact both partners in coral host-Symbiodinium systems. Elucidation of the assembly patterns in such complex and interdependent communities may enable better prediction of environmental impacts across coral reef ecosystems. In this study, we investigated how the community composition and diversity of dinoflagellate symbionts in the genus Symbiodinium were distributed among 12 host species from six taxonomic orders (Actinaria, Alcyonacea, Miliolida, Porifera, Rhizostoma, Scleractinia) and in the reef water and sediments at Lizard Island, Great Barrier Reef before the 3rd Global Coral Bleaching Event. 454 pyrosequencing of the ITS2 region of Symbiodinium yielded 83 operational taxonomic units (OTUs) at a 97% similarity cut-off. Approximately half of the Symbiodinium OTUs from reef water or sediments were also present in symbio. OTUs belonged to six clades (A-D, F-G), but community structure was uneven. The two most abundant OTUs (100% matches to types C1 and A3) comprised 91% of reads and OTU C1 was shared by all species. However, sequence-based analysis of these dominant OTUs revealed host species specificity, suggesting that genetic similarity cut-offs of Symbiodinium ITS2 data sets need careful evaluation. Of the less abundant OTUs, roughly half occurred at only one site or in one species and the background Symbiodinium communities were distinct between individual samples. We conclude that sampling multiple host taxa with differing life history traits will be critical to fully understand the symbiont diversity of a given system and to predict coral ecosystem responses to environmental change and disturbance considering the differential stress response of the taxa within.


Asunto(s)
Biodiversidad , Dinoflagelados/genética , Variación Genética , Animales , Antozoos , Arrecifes de Coral , ADN Protozoario/análisis , ADN Espaciador Ribosómico/análisis , Dinoflagelados/clasificación , Dinoflagelados/fisiología , Sedimentos Geológicos/parasitología , Secuenciación de Nucleótidos de Alto Rendimiento , Queensland , Simbiosis
18.
BMC Microbiol ; 17(1): 192, 2017 Sep 12.
Artículo en Inglés | MEDLINE | ID: mdl-28899339

RESUMEN

BACKGROUND: Benthic ciliates and the environmental factors shaping their distribution are far from being completely understood. Likewise, deep-sea systems are amongst the least understood ecosystems on Earth. In this study, using high-throughput DNA sequencing, we investigated the diversity and community composition of benthic ciliates in different sediment layers of a seamount and an adjacent abyssal plain in the tropical Western Pacific Ocean with water depths ranging between 813 m and 4566 m. Statistical analyses were used to assess shifts in ciliate communities across vertical sediment gradients and water depth. RESULTS: Nine out of 12 ciliate classes were detected in the different sediment samples, with Litostomatea accounting for the most diverse group, followed by Plagiopylea and Oligohymenophorea. The novelty of ciliate genetic diversity was extremely high, with a mean similarity of 93.25% to previously described sequences. On a sediment depth gradient, ciliate community structure was more similar within the upper sediment layers (0-1 and 9-10 cm) compared to the lower sediment layers (19-20 and 29-30 cm) at each site. Some unknown ciliate taxa which were absent from the surface sediments were found in deeper sediments layers. On a water depth gradient, the proportion of unique OTUs was between 42.2% and 54.3%, and that of OTUs shared by all sites around 14%. However, alpha diversity of the different ciliate communities was relatively stable in the surface layers along the water depth gradient, and about 78% of the ciliate OTUs retrieved from the surface layer of the shallowest site were shared with the surface layers of sites deeper than 3800 m. Correlation analyses did not reveal any significant effects of measured environmental factors on ciliate community composition and structure. CONCLUSIONS: We revealed an obvious variation in ciliate community along a sediment depth gradient in the seamount and the adjacent abyssal plain and showed that water depth is a less important factor shaping ciliate distribution in deep-sea sediments unlike observed for benthic ciliates in shallow seafloors. Additionally, an extremely high genetic novelty of ciliate diversity was found in these habitats, which points to a hot spot for the discovery of new ciliate species.


Asunto(s)
Biodiversidad , Cilióforos/clasificación , Sedimentos Geológicos/parasitología , Agua de Mar/parasitología , Cilióforos/genética , Cilióforos/aislamiento & purificación , ADN Protozoario , Ecosistema , Variación Genética , Secuenciación de Nucleótidos de Alto Rendimiento , Datos de Secuencia Molecular , Océano Pacífico , Filogenia , ARN Ribosómico 18S/genética
19.
J Eukaryot Microbiol ; 64(6): 829-842, 2017 11.
Artículo en Inglés | MEDLINE | ID: mdl-28397389

RESUMEN

We investigate the cyst-theca relationship of Impagidinium caspienense. Through an incubation experiment, we succeeded in examining the motile stage. Additional molecular analysis of single-cyst PCR (LSU and SSU rDNA) reveal that the cyst is related to the species Gonyaulax baltica Ellegaard et al. (). The ability of this species to belong to two types of cyst-based genera (spiniferate and impagidinioid) suggests that environmental (particularly salinity) and not genetic factors explain the formation of both morphotypes by G. baltica, which provides evidence for heterospory in this species. The affiliation to G. baltica demonstrates that I. caspienense is not endemic to the Caspian Sea. The phylogenetic position of several other gonyaulacoid species is also documented: Impagidinium pallidum, Ataxiodinium choane, Pyxidinopsis psilata, Spiniferites belerius, and Spiniferites ramosus. The LSU and SSU rDNA based phylogenies suggest that the genera Impagidinium and Spiniferites are not monophyletic, and that P. psilata and A. choane are close to Gonyaulax verior and Gonyaulax polygramma, respectively. In addition, this study accentuates the importance of cyst morphology in the classification of the Gonyaulacales.


Asunto(s)
Dinoflagelados/clasificación , Dinoflagelados/aislamiento & purificación , Sedimentos Geológicos/parasitología , Análisis por Conglomerados , ADN Protozoario/química , ADN Protozoario/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Dinoflagelados/genética , Dinoflagelados/fisiología , Locomoción , Microscopía , Océanos y Mares , Filogenia , Reacción en Cadena de la Polimerasa , ARN Ribosómico/genética , ARN Ribosómico 18S/genética , Análisis de Secuencia de ADN
20.
Microb Ecol ; 73(3): 539-555, 2017 04.
Artículo en Inglés | MEDLINE | ID: mdl-27888292

RESUMEN

Time series foraminiferal data were obtained from samples collected from three sites at Brancaster Overy Staithe, Burnham Overy Staithe and Thornham on the North Norfolk coast over a 1-year period. At each collection point, six environmental variables-temperature, chlorophyll, sand, mud, pH and salinity-were also measured. The principle aim of this study was to examine the benthic foraminiferal fauna in regard to the temporal variability of foraminiferal abundance, seasonal trend, dominant species, species diversity and the impact of environmental variables on the foraminiferal communities in the top 1 cm of sediment over a 1-year time series. The foraminiferal assemblages at the three sites were dominated by three species: Haynesina germanica, Ammonia sp. and Elphidium williamsoni. Foraminiferal species showed considerable seasonal and temporal fluctuation throughout the year at the three investigated sites. The foraminiferal assemblage at the three low marsh zones showed a maximum abundance in autumn between September and November and a minimum abundance observed between July and August. There were two separate peaks in the abundance of Ammonia sp. and E. williamsoni, one in spring and another in autumn. In contrast, H. germanica showed a single peak in its abundance in autumn. A generalized additive modelling approach was used to explain the variation in the observed foraminiferal abundance and to estimate the significant impact of each of the environmental variables on living foraminiferal assemblages, with taxa abundance as the dependent variable. When included in the model as predictors, most of the environmental variables contributed little in explaining the observed variation in foraminiferal species abundance. However, the hypotheses for differences amongst sites, salinity and pH were significant and explained most of the variability in species relative abundance.


Asunto(s)
Foraminíferos/clasificación , Foraminíferos/aislamiento & purificación , Sedimentos Geológicos/parasitología , Agua de Mar/parasitología , Humedales , Biodiversidad , Inglaterra , Ambiente , Monitoreo del Ambiente , Estaciones del Año
SELECCIÓN DE REFERENCIAS
DETALLE DE LA BÚSQUEDA