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DiAna, an ImageJ tool for object-based 3D co-localization and distance analysis.
Gilles, Jean-François; Dos Santos, Marc; Boudier, Thomas; Bolte, Susanne; Heck, Nicolas.
Affiliation
  • Gilles JF; Sorbonne Universités, UPMC Univ Paris 06, CNRS, Core Facility - Institut de Biologie Paris Seine (IBPS), 75005 Paris, France.
  • Dos Santos M; Sorbonne Universités, UPMC Univ Paris 06, INSERM, CNRS, Neurosciences Paris Seine - Institut de Biologie Paris Seine (NPS - IBPS), 75005 Paris, France.
  • Boudier T; Sorbonne Universités, UPMC Univ Paris 06, IPAL, CNRS, Singapore; Bioinformatics Institute, Agency for Science, Technology and Research (A*STAR), Singapore.
  • Bolte S; Sorbonne Universités, UPMC Univ Paris 06, CNRS, Core Facility - Institut de Biologie Paris Seine (IBPS), 75005 Paris, France.
  • Heck N; Sorbonne Universités, UPMC Univ Paris 06, INSERM, CNRS, Neurosciences Paris Seine - Institut de Biologie Paris Seine (NPS - IBPS), 75005 Paris, France. Electronic address: nicolas.heck@upmc.fr.
Methods ; 115: 55-64, 2017 02 15.
Article in En | MEDLINE | ID: mdl-27890650
ABSTRACT
We present a new plugin for ImageJ called DiAna, for Distance Analysis, which comes with a user-friendly interface. DiAna proposes robust and accurate 3D segmentation for object extraction. The plugin performs automated object-based co-localization and distance analysis. DiAna offers an in-depth analysis of co-localization between objects and retrieves 3D measurements including co-localizing volumes and surfaces of contact. It also computes the distribution of distances between objects in 3D. With DiAna, we furthermore introduce an original method, which allows for estimating the statistical significance of object co-localization. DiAna offers a complete and intuitive 3D image analysis tool for biologists.
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Full text: 1 Database: MEDLINE Main subject: Image Processing, Computer-Assisted / Software / Brain / Microscopy, Confocal / Microscopy, Fluorescence Limits: Animals Language: En Year: 2017 Type: Article

Full text: 1 Database: MEDLINE Main subject: Image Processing, Computer-Assisted / Software / Brain / Microscopy, Confocal / Microscopy, Fluorescence Limits: Animals Language: En Year: 2017 Type: Article