Discovery of Nicotinamide Adenine Dinucleotide Binding Proteins in the Escherichia coli Proteome Using a Combined Energetic- and Structural-Bioinformatics-Based Approach.

Zeng, Lingfei; Shin, Woong-Hee; Zhu, Xiaolei; Park, Sung Hoon; Park, Chiwook; Tao, W Andy; Kihara, Daisuke

Zeng, Lingfei; Shin, Woong-Hee; Zhu, Xiaolei; Park, Sung Hoon; Park, Chiwook; Tao, W Andy; Kihara, Daisuke.

Affiliation

Zhu X; School of Life Science, Anhui University , Hefei, Anhui 230601, China.
Park SH; Research Institute of Food and Biotechnology, SPC Group , Seoul 06737, South Korea.

J Proteome Res ; 16(2): 470-480, 2017 02 03.

Article in En | MEDLINE | ID: mdl-28152599

Subject(s)

Computational Biology/methods; Escherichia coli Proteins/chemistry; Escherichia coli/chemistry; NAD/chemistry; Proteome/chemistry; Complex Mixtures/chemistry; Escherichia coli/genetics; Escherichia coli/metabolism; Escherichia coli Proteins/genetics; Escherichia coli Proteins/metabolism; Gene Expression; Ligands; Molecular Docking Simulation; NAD/metabolism; Protein Binding; Protein Conformation, alpha-Helical; Protein Conformation, beta-Strand; Protein Interaction Domains and Motifs; Protein Stability; Proteolysis; Proteome/genetics; Proteome/metabolism; Software; Thermolysin/chemistry

Key words

Patch-Surfer2.0; binding pocket comparison; binding pocket screening; protein−ligand interaction; pulse proteolysis; quantitative mass spectrometry; structural bioinformatics; tandem mass tags labeling

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Full text: 1 Database: MEDLINE Main subject: Computational Biology / Proteome / Escherichia coli Proteins / Escherichia coli / NAD Language: En Year: 2017 Type: Article

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Full text: 1 Database: MEDLINE Main subject: Computational Biology / Proteome / Escherichia coli Proteins / Escherichia coli / NAD Language: En Year: 2017 Type: Article