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Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay.
Shigaki, Dustin; Adato, Orit; Adhikari, Aashish N; Dong, Shengcheng; Hawkins-Hooker, Alex; Inoue, Fumitaka; Juven-Gershon, Tamar; Kenlay, Henry; Martin, Beth; Patra, Ayoti; Penzar, Dmitry D; Schubach, Max; Xiong, Chenling; Yan, Zhongxia; Boyle, Alan P; Kreimer, Anat; Kulakovskiy, Ivan V; Reid, John; Unger, Ron; Yosef, Nir; Shendure, Jay; Ahituv, Nadav; Kircher, Martin; Beer, Michael A.
Affiliation
  • Shigaki D; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland.
  • Adato O; The Mina & Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel.
  • Adhikari AN; Department of Plant and Microbial Biology, University of California, Berkeley, California.
  • Dong S; Department of Computational Medicine and Bioinformatics and Department of Human Genetics, University of Michigan, Ann Arbor, Michigan.
  • Hawkins-Hooker A; MRC Biostatistics Unit, University of Cambridge, UK.
  • Inoue F; Department of Bioengineering and Therapeutic Sciences and Institute for Human Genetics, University of California San Francisco, San Francisco, California.
  • Juven-Gershon T; The Mina & Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel.
  • Kenlay H; MRC Biostatistics Unit, University of Cambridge, UK.
  • Martin B; Department of Genome Sciences, University of Washington, Seattle, Washington.
  • Patra A; McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland.
  • Penzar DD; Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia.
  • Schubach M; School of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia.
  • Xiong C; Berlin Institute of Health (BIH), Berlin, Germany.
  • Yan Z; Charité - Universitätsmedizin Berlin, Berlin, Germany.
  • Boyle AP; Department of Bioengineering and Therapeutic Sciences and Institute for Human Genetics, University of California San Francisco, San Francisco, California.
  • Kreimer A; Charité - Universitätsmedizin Berlin, Berlin, Germany.
  • Kulakovskiy IV; Department of Computational Medicine and Bioinformatics and Department of Human Genetics, University of Michigan, Ann Arbor, Michigan.
  • Reid J; Department of Bioengineering and Therapeutic Sciences and Institute for Human Genetics, University of California San Francisco, San Francisco, California.
  • Unger R; Department of Electrical Engineering and Computer Science and Center for Computational Biology, University of California, Berkeley, California.
  • Yosef N; Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia.
  • Shendure J; School of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia.
  • Ahituv N; Institute of Mathematical Problems of Biology, Keldysh Institute of Applied Mathematics of Russian Academy of Sciences, Pushchino, Russia.
  • Kircher M; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia.
  • Beer MA; MRC Biostatistics Unit, University of Cambridge, UK.
Hum Mutat ; 40(9): 1280-1291, 2019 09.
Article in En | MEDLINE | ID: mdl-31106481
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Full text: 1 Database: MEDLINE Main subject: DNA / Point Mutation / Epigenomics Type of study: Prognostic_studies / Risk_factors_studies Limits: Humans Language: En Year: 2019 Type: Article
Fulltext
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PubMed Links
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Full text: 1 Database: MEDLINE Main subject: DNA / Point Mutation / Epigenomics Type of study: Prognostic_studies / Risk_factors_studies Limits: Humans Language: En Year: 2019 Type: Article