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Bayesian Multiple Emitter Fitting using Reversible Jump Markov Chain Monte Carlo.
Fazel, Mohamadreza; Wester, Michael J; Mazloom-Farsibaf, Hanieh; Meddens, Marjolein B M; Eklund, Alexandra S; Schlichthaerle, Thomas; Schueder, Florian; Jungmann, Ralf; Lidke, Keith A.
Affiliation
  • Fazel M; Department of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.
  • Wester MJ; Department of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.
  • Mazloom-Farsibaf H; Department of Mathematics and Statistics, University of New Mexico, Albuquerque, New Mexico, USA.
  • Meddens MBM; Department of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.
  • Eklund AS; Department of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.
  • Schlichthaerle T; Department of Physics and Center for Nanoscience, Ludwig Maximilian University, Munich, Germany.
  • Schueder F; Max Planck Institute of Biochemistry, Martinsried, Germany.
  • Jungmann R; Department of Physics and Center for Nanoscience, Ludwig Maximilian University, Munich, Germany.
  • Lidke KA; Max Planck Institute of Biochemistry, Martinsried, Germany.
Sci Rep ; 9(1): 13791, 2019 09 24.
Article in En | MEDLINE | ID: mdl-31551452
ABSTRACT
In single molecule localization-based super-resolution imaging, high labeling density or the desire for greater data collection speed can lead to clusters of overlapping emitter images in the raw super-resolution image data. We describe a Bayesian inference approach to multiple-emitter fitting that uses Reversible Jump Markov Chain Monte Carlo to identify and localize the emitters in dense regions of data. This formalism can take advantage of any prior information, such as emitter intensity and density. The output is both a posterior probability distribution of emitter locations that includes uncertainty in the number of emitters and the background structure, and a set of coordinates and uncertainties from the most probable model.
Subject(s)

Full text: 1 Database: MEDLINE Main subject: Monte Carlo Method / Markov Chains / Bayes Theorem Type of study: Health_economic_evaluation / Prognostic_studies Limits: Humans Language: En Year: 2019 Type: Article

Full text: 1 Database: MEDLINE Main subject: Monte Carlo Method / Markov Chains / Bayes Theorem Type of study: Health_economic_evaluation / Prognostic_studies Limits: Humans Language: En Year: 2019 Type: Article