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Genetic architecture of seed glycerolipids in Asian cultivated rice.
Hong, Jun; Rosental, Leah; Xu, Yang; Xu, Dawei; Orf, Isabel; Wang, Wengsheng; Hu, Zhiqiang; Su, Su; Bai, Shaoxing; Ashraf, Mohammed; Hu, Chaoyang; Zhang, Changquan; Li, Zhikang; Xu, Jianlong; Liu, Qiaoquan; Zhang, Hui; Zhang, Fengli; Luo, Zhijing; Chen, Mingjiao; Chen, Xiaofei; Betts, Natalie; Fernie, Alisdair; Liang, Wanqi; Chen, Guanqun; Brotman, Yariv; Zhang, Dabing; Shi, Jianxin.
Affiliation
  • Hong J; Department of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
  • Rosental L; Waite Research Institute, School of Agriculture, Food and Wine, University of Adelaide, Urrbrae, SA, Australia.
  • Xu Y; Department of Life Sciences, Ben Gurion University of the Negev, Beersheva, Israel.
  • Xu D; Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB, Canada.
  • Orf I; Department of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
  • Wang W; Department of Life Sciences, Ben Gurion University of the Negev, Beersheva, Israel.
  • Hu Z; Department of Rice Molecular Design Technology and Application, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
  • Su S; Department of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
  • Bai S; Department of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
  • Ashraf M; Department of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
  • Hu C; Department of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
  • Zhang C; Department of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
  • Li Z; Department of Agronomy, Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, College of Agriculture, Yangzhou University, Yangzhou, China.
  • Xu J; Department of Rice Molecular Design Technology and Application, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
  • Liu Q; Department of Rice Molecular Design Technology and Application, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
  • Zhang H; Department of Agronomy, Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, College of Agriculture, Yangzhou University, Yangzhou, China.
  • Zhang F; Department of Plant Science, School of Life Sciences, Shanghai Normal University, Shanghai, China.
  • Luo Z; Department of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
  • Chen M; Department of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
  • Chen X; Department of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
  • Betts N; Department of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
  • Fernie A; Waite Research Institute, School of Agriculture, Food and Wine, University of Adelaide, Urrbrae, SA, Australia.
  • Liang W; Department of Central Metabolism, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
  • Chen G; Department of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
  • Brotman Y; Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB, Canada.
  • Zhang D; Department of Life Sciences, Ben Gurion University of the Negev, Beersheva, Israel.
  • Shi J; Department of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Plant Cell Environ ; 46(4): 1278-1294, 2023 04.
Article in En | MEDLINE | ID: mdl-35698268
ABSTRACT
Glycerolipids are essential for rice development and grain quality but its genetic regulation remains unknown. Here we report its genetic base using metabolite-based genome-wide association study and metabolite-based quantitative traits locus (QTL) analyses based on lipidomic profiles of seeds from 587 Asian cultivated rice accessions and 103 chromosomal segment substitution lines, respectively. We found that two genes encoding phosphatidylcholine (PC)diacylglycerol cholinephosphotransferase (OsLP1) and granule-bound starch synthase I (Waxy) contribute to variations in saturated triacylglycerol (TAG) and lyso-PC contents, respectively. We demonstrated that allelic variation in OsLP1 sequence between indica and japonica results in different enzymatic preference for substrate PC-160/160 and different saturated TAG levels. Further evidence demonstrated that OsLP1 also affects heading date, and that co-selection of OsLP1 and a flooding-tolerant QTL in Aus results in the abundance of saturated TAGs associated with flooding tolerance. Moreover, we revealed that the sequence polymorphisms in Waxy has pleiotropic effects on lyso-PC and amylose content. We proposed that rice seed glycerolipids have been unintentionally shaped during natural and artificial selection for adaptive or import seed quality traits. Collectively, our findings provide valuable genetic resources for rice improvement and evolutionary insights into seed glycerolipid variations in rice.
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Full text: 1 Database: MEDLINE Main subject: Oryza Language: En Year: 2023 Type: Article
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Full text: 1 Database: MEDLINE Main subject: Oryza Language: En Year: 2023 Type: Article