ORE-Seq: Genome-Wide Absolute Occupancy Measurement by Restriction Enzyme Accessibilities.

Oberbeckmann, Elisa; Wolff, Michael Roland; Krietenstein, Nils; Heron, Mark; Schmid, Andrea; Straub, Tobias; Gerland, Ulrich; Korber, Philipp.

Affiliation

Oberbeckmann E; Department of Molecular Biology, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Wolff MR; Department of Physics, Technical University of Munich, Garching, Germany.
Krietenstein N; Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, Denmark.
Heron M; Quantitative and Computational Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
Schmid A; Gene Center, Faculty of Chemistry and Pharmacy, Ludwig-Maximilians-Universität München, Munich, Germany.
Straub T; Biomedical Center (BMC), Division of Molecular Biology, Faculty of Medicine, LMU Munich, Martinsried, Germany.
Gerland U; Core Facility Bioinformatics, Biomedical Center (BMC), Faculty of Medicine, LMU Munich, Martinsried, Germany.
Korber P; Department of Physics, Technical University of Munich, Garching, Germany.

Methods Mol Biol ; 2611: 121-152, 2023.

Article in En | MEDLINE | ID: mdl-36807068

Subject(s)

Chromatin; Saccharomyces cerevisiae; Saccharomyces cerevisiae/genetics; DNA/genetics; Genome; DNA Restriction Enzymes/genetics; Sequence Analysis, DNA/methods; High-Throughput Nucleotide Sequencing/methods

Key words

Absolute occupancy; Chromatin; DNA accessibility; High-throughput sequencing; Restriction enzyme