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First transcriptome assembly of a newly discovered vent mussel, Gigantidas vrijenhoeki, at Onnuri Vent Field on the northern Central Indian Ridge.
Ryu, Taewoo; Kim, Jong Guk; Lee, Jimin; Yu, Ok Hwan; Yum, Seungshic; Kim, Dongsung; Woo, Seonock.
Afiliación
  • Ryu T; Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan.
  • Kim JG; Marine Ecosystem and Biological Research Center, Korea Institute of Ocean Science and Technology, Busan 49111, Republic of Korea.
  • Lee J; Marine Ecosystem and Biological Research Center, Korea Institute of Ocean Science and Technology, Busan 49111, Republic of Korea.
  • Yu OH; Marine Ecosystem and Biological Research Center, Korea Institute of Ocean Science and Technology, Busan 49111, Republic of Korea.
  • Yum S; Ecological Risk Research Division, Korea Institute of Ocean Science and Technology, Geoje 53201, South Korea.
  • Kim D; Marine Ecosystem and Biological Research Center, Korea Institute of Ocean Science and Technology, Busan 49111, Republic of Korea.
  • Woo S; Marine Biotechnology Research Center, Korea Institute of Ocean Science and Technology, Busan 49111, South Korea. Electronic address: cwoo@kiost.ac.kr.
Mar Genomics ; 57: 100819, 2021 Jun.
Article en En | MEDLINE | ID: mdl-32933864
ABSTRACT
This is the first report of a transcriptome assembly of a newly discovered hydrothermal vent mussel, Gigantidas vrijenhoeki (Bivalvia Mytilidae), on the Central Indian Ridge. Gigantidas vrijenhoeki was identified from material collected at the newly discovered Onnuri Vent Field (OVF) on the Central Indian Ridge in 2018, and was reported as a new species, distinct from another dominant hydrothermal vent mussel, Bathymodiolus marisindicus, in 2020. We sequenced the transcriptome of G. vrijenhoeki using the Illumina HiSeq X System. De novo assembly and analysis of the coding regions predicted 25,405 genes, 84.76% of which was annotated by public databases. The transcriptome of G. vrijenhoeki will be a valuable resource in studying the ecological and biological characteristics of this new species, which is distinct from other deep-sea mussels. These data should also support the investigation of the relationship between the environmental conditions of hydrothermal vents and the unique distribution of G. vrijenhoeki in the OVF of the Central Indian Ridge.
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Texto completo: 1 Banco de datos: MEDLINE Asunto principal: Mytilidae / Transcriptoma Tipo de estudio: Prognostic_studies Límite: Animals Idioma: En Año: 2021 Tipo del documento: Article

Texto completo: 1 Banco de datos: MEDLINE Asunto principal: Mytilidae / Transcriptoma Tipo de estudio: Prognostic_studies Límite: Animals Idioma: En Año: 2021 Tipo del documento: Article