The pear genomics database (PGDB): a comprehensive multi-omics research platform for Pyrus spp.
BMC Plant Biol
; 23(1): 430, 2023 Sep 15.
Article
en En
| MEDLINE
| ID: mdl-37710163
ABSTRACT
BACKGROUND:
Pears are among the most important temperate fruit trees in the world, with significant research efforts increasing over the last years. However, available omics data for pear cannot be easily and quickly retrieved to enable further studies using these biological data. DESCRIPTION Here, we present a publicly accessible multi-omics pear resource platform, the Pear Genomics Database (PGDB). We collected and collated data on genomic sequences, genome structure, functional annotation, transcription factor predictions, comparative genomics, and transcriptomics. We provide user-friendly functional modules to facilitate querying, browsing and usage of these data. The platform also includes basic and useful tools, including JBrowse, BLAST, phylogenetic tree building, and additional resources providing the possibility for bulk data download and quick usage guide services.CONCLUSIONS:
The Pear Genomics Database (PGDB, http//pyrusgdb.sdau.edu.cn ) is an online data analysis and query resource that integrates comprehensive multi-omics data for pear. This database is equipped with user-friendly interactive functional modules and data visualization tools, and constitutes a convenient platform for integrated research on pear.Palabras clave
Texto completo:
1
Banco de datos:
MEDLINE
Asunto principal:
Pyrus
Tipo de estudio:
Prognostic_studies
Idioma:
En
Año:
2023
Tipo del documento:
Article