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1.
Foods ; 12(18)2023 Sep 07.
Article in English | MEDLINE | ID: mdl-37761061

ABSTRACT

Flaxseed oil is one of the best sources of n-3 fatty acids, thus its adulteration with refined oils can lead to a reduction in its nutritional value and overall quality. The purpose of this study was to compare different chemometric models to detect adulteration of flaxseed oil with refined rapeseed oil (RP) using differential scanning calorimetry (DSC). Based on the melting phase transition curve, parameters such as peak temperature (T), peak height (h), and percentage of area (P) were determined for pure and adulterated flaxseed oils with an RP concentration of 5, 10, 20, 30, and 50% (w/w). Significant linear correlations (p ≤ 0.05) between the RP concentration and all DSC parameters were observed, except for parameter h1 for the first peak. In order to assess the usefulness of the DSC technique for detecting adulterations, three chemometric approaches were compared: (1) classification models (linear discriminant analysis-LDA, adaptive regression splines-MARS, support vector machine-SVM, and artificial neural networks-ANNs); (2) regression models (multiple linear regression-MLR, MARS, SVM, ANNs, and PLS); and (3) a combined model of orthogonal partial least squares discriminant analysis (OPLS-DA). With the LDA model, the highest accuracy of 99.5% in classifying the samples, followed by ANN > SVM > MARS, was achieved. Among the regression models, the ANN model showed the highest correlation between observed and predicted values (R = 0.996), while other models showed goodness of fit as following MARS > SVM > MLR. Comparing OPLS-DA and PLS methods, higher values of R2X(cum) = 0.986 and Q2 = 0.973 were observed with the PLS model than OPLS-DA. This study demonstrates the usefulness of the DSC technique and importance of an appropriate chemometric model for predicting the adulteration of cold-pressed flaxseed oil with refined rapeseed oil.

2.
Food Chem ; 420: 136161, 2023 Sep 15.
Article in English | MEDLINE | ID: mdl-37080110

ABSTRACT

Adulteration identification of extra virgin olive oil (EVOO) is a vital issue in the olive oil industry. In this study, chromatographic fingerprint data of pigments combined with machine learning methodologies were successfully identified and classified EVOO, refined-pomace olive oil (R-POO), rapeseed oil (RO), soybean oil (SO), peanut oil (PO), sunflower oil (SFO), flaxseed oil (FO), corn oil (CO), extra virgin olive oil adulterated with rapeseed oil (EVOO-RO) and extra virgin olive oil adulterated with corn oil (EVOO-CO). Support vector machine (SVM) classification of EVOO, other edible oils, and EVOO adulteration identification achieved 100% accuracy for the training set sample and 94.44% accuracy for the test set sample. As a result, this SVM model could identify effectively the adulteration EVOO with the limit of 1% RO and 1% CO. Therefore, the excellent classification and predictive power of this model indicated pigments could be used as potential markers for identifying EVOO adulteration.


Subject(s)
Corn Oil , Support Vector Machine , Olive Oil/chemistry , Corn Oil/analysis , Rapeseed Oil , Plant Oils/analysis , Sunflower Oil
3.
EClinicalMedicine ; 57: 101834, 2023 Mar.
Article in English | MEDLINE | ID: mdl-36825238

ABSTRACT

Background: Tongue images (the colour, size and shape of the tongue and the colour, thickness and moisture content of the tongue coating), reflecting the health state of the whole body according to the theory of traditional Chinese medicine (TCM), have been widely used in China for thousands of years. Herein, we investigated the value of tongue images and the tongue coating microbiome in the diagnosis of gastric cancer (GC). Methods: From May 2020 to January 2021, we simultaneously collected tongue images and tongue coating samples from 328 patients with GC (all newly diagnosed with GC) and 304 non-gastric cancer (NGC) participants in China, and 16 S rDNA was used to characterize the microbiome of the tongue coating samples. Then, artificial intelligence (AI) deep learning models were established to evaluate the value of tongue images and the tongue coating microbiome in the diagnosis of GC. Considering that tongue imaging is more convenient and economical as a diagnostic tool, we further conducted a prospective multicentre clinical study from May 2020 to March 2022 in China and recruited 937 patients with GC and 1911 participants with NGC from 10 centres across China to further evaluate the role of tongue images in the diagnosis of GC. Moreover, we verified this approach in another independent external validation cohort that included 294 patients with GC and 521 participants with NGC from 7 centres. This study is registered at ClinicalTrials.gov, NCT01090362. Findings: For the first time, we found that both tongue images and the tongue coating microbiome can be used as tools for the diagnosis of GC, and the area under the curve (AUC) value of the tongue image-based diagnostic model was 0.89. The AUC values of the tongue coating microbiome-based model reached 0.94 using genus data and 0.95 using species data. The results of the prospective multicentre clinical study showed that the AUC values of the three tongue image-based models for GCs reached 0.88-0.92 in the internal verification and 0.83-0.88 in the independent external verification, which were significantly superior to the combination of eight blood biomarkers. Interpretation: Our results suggest that tongue images can be used as a stable method for GC diagnosis and are significantly superior to conventional blood biomarkers. The three kinds of tongue image-based AI deep learning diagnostic models that we developed can be used to adequately distinguish patients with GC from participants with NGC, even early GC and precancerous lesions, such as atrophic gastritis (AG). Funding: The National Key R&D Program of China (2021YFA0910100), Program of Zhejiang Provincial TCM Sci-tech Plan (2018ZY006), Medical Science and Technology Project of Zhejiang Province (2022KY114, WKJ-ZJ-2104), Zhejiang Provincial Research Center for Upper Gastrointestinal Tract Cancer (JBZX-202006), Natural Science Foundation of Zhejiang Province (HDMY22H160008), Science and Technology Projects of Zhejiang Province (2019C03049), National Natural Science Foundation of China (82074245, 81973634, 82204828), and Chinese Postdoctoral Science Foundation (2022M713203).

4.
Med Biol Eng Comput ; 61(3): 835-845, 2023 Mar.
Article in English | MEDLINE | ID: mdl-36626112

ABSTRACT

Motor imagery brain-computer interface (MI-BCI) is one of the most used paradigms in EEG-based brain-computer interface (BCI). The current state-of-the-art in BCI involves tuning classifiers to subject-specific training data, acquired over several sessions, in order to perform calibration prior to actual use of the so-called subject-specific BCI system (SS-BCI). Herein, the goal is to provide a ready-to-use system requiring minimal effort for setup. Thus, our challenge was to design a subject-independent BCI (SI-BCI) to be used by any new user without the constraint of individual calibration. Outcomes from other studies with the same purpose were used to undertake comparisons and validate our findings. For the EEG signal processing, we used a combination of the delta (0.5-4 Hz), alpha (8-13 Hz), and beta+gamma (13-40 Hz) bands at a stage prior to feature extraction. Next, we extracted features from the 27-channel EEG using common spatial pattern (CSP) and performed binary classification (MI of right- and left-hand) with linear discriminant analysis (LDA) and support vector machine (SVM) classifiers. These analyses were done for both the SS-BCI and SI-BCI models. We employed "leave-one-subject-out" (LOSO) arrangement and 10-fold cross-validation to evaluate our SI-BCI and SS-BCI systems, respectively. Compared with other two studies, our work was the only one that showed higher accuracy for the LDA classifier in SI-BCI as compared to SS-BCI. On the other hand, LDA accuracy was lower than accuracy achieved with SVM in both conditions (SI-BCI and SS-BCI). Our SS-BCI accuracy reached 76.85% using LDA and 94.20% using SVM and for SI-BCI we got 80.30% with LDA and 83.23% with SVM. We conclude that SI-BCI may be a feasible and relevant option, which can be used in scenarios where subjects are not able to submit themselves to long training sessions or to fast evaluation of the so called "BCI illiteracy." Comparatively, our strategy proved to be more efficient, giving us the best result for SI-BCI when faced against the classification performances of other three studies, even considering the caveat that different datasets were used in the comparison of the four studies.


Subject(s)
Brain-Computer Interfaces , Electroencephalography , Humans , Support Vector Machine , Discriminant Analysis , Imagery, Psychotherapy , Imagination , Algorithms
5.
Med Biol Eng Comput ; 61(5): 1047-1056, 2023 May.
Article in English | MEDLINE | ID: mdl-36650410

ABSTRACT

The motor imagery brain-computer interface (MI-BCI) provides an interactive control channel for spinal cord injury patients. However, the limitations of feature extraction algorithms may lead to low accuracy and instability in decoding electroencephalogram (EEG) signals. In this study, we examined the classification performance of an MI-BCI system by focusing on the distinction of the left and right foot kinaesthetic motor imagery tasks in five subjects. Feature extraction was performed using the common space pattern (CSP) and the Tikhonov regularisation CSP (TRCSP) spatial filters. TRCSP overcomes the CSP problems of noise sensitivity and overfitting. Moreover, support vector machine (SVM) and linear discriminant analysis (LDA) were used for classification and recognition. We constructed four combined classification methods (TRCSP-SVM, TRCSP-LDA, CSP-SVM, and CSP-LDA) and evaluated them by comparing their accuracies, kappa coefficients, and receiver operating characteristic (ROC) curves. The results showed that the TRCSP-SVM method performed significantly better than others (average accuracy 97%, average kappa coefficient 0.91, and average area under ROC curve (AUC) 0.98). Using TRCSP instead of standard CSP improved accuracy by up to 10%. This study provides insights into the classification of EEG signals. The results of this study can aid lower limb MI-BCI systems in rehabilitation training.


Subject(s)
Brain-Computer Interfaces , Imagery, Psychotherapy , Humans , Foot , Electroencephalography/methods , Support Vector Machine , Algorithms , Imagination
6.
Clin EEG Neurosci ; 54(3): 228-237, 2023 May.
Article in English | MEDLINE | ID: mdl-35686319

ABSTRACT

In nearly all studies within the domain of neurofeedback, a threshold has been defined for each training feature in a way that subjects' status can be evaluated during training according to the given value. In this study, a hard boundary-based neurofeedback training (HBNFT) method based on the determination of decision boundary using support vector machine (SVM) classifier was proposed in which subjects' status were clarified considering a decision boundary and they could also be encouraged once entering a target area. In this method, a scoring index (SI) was similarly defined whose value was determined in accordance with subject performance during training. The results revealed that employing a classifier and determining a decision boundary instead of using a threshold could prove more successful in accurately guiding them towards a target area and also meet no needs to choose a basis for determining a threshold. Moreover, it was likely that the proposed method could be more efficient in controlling features and preventing extreme changes compared to those using variable thresholds.


Subject(s)
Neurofeedback , Humans , Neurofeedback/methods , Electroencephalography/methods , Support Vector Machine
7.
Biomed Phys Eng Express ; 9(1)2022 12 30.
Article in English | MEDLINE | ID: mdl-36535004

ABSTRACT

More recently, a number of studies show the interest of the use of the Riemannian geometry in EEG classification. The idea is to exploit the EEG covariance matrices, instead of the raw EEG data, and use the Riemannian geometry to directly classify these matrices. This paper presents a novel Artificial Neural Network approach based on an Adaptive Riemannian Kernel, named ARK-ANN, to classify Electroencephalographic (EEG) motor imaging signals in the context of Brain Computer Interface (BCI). A multilayer perceptron is used to classify the covariance matrices of Motor Imagery (MI) signals employing an adaptive optimization of the testing set. The contribution of a geodesic filter is also assessed for the ANN and the original method which uses an SVM classifier. The results demonstrate that the ARK-ANN performs better than the other methods and the geodesic filter gives slightly better results in the ARK-SVM, considered here as the reference method, in the case of inter-subject classification (accuracy of 87.4% and 86% for ARK-ANN and ARK-SVM, respectively). Regarding the cross-subject classification, the proposed method gives an accuracy of 77.3% and increases the precision by 8.2% in comparison to the SVM based method.


Subject(s)
Brain-Computer Interfaces , Neural Networks, Computer , Imagery, Psychotherapy , Electroencephalography/methods
8.
Cogn Process ; 23(4): 593-618, 2022 Nov.
Article in English | MEDLINE | ID: mdl-35794496

ABSTRACT

Articulation imagery, a form of mental imagery, refers to the activity of imagining or speaking to oneself mentally without an articulation movement. It is an effective domain of research in speech impaired neural disorders, as speech imagination has high similarity to real voice communication. This work employs electroencephalography (EEG) signals acquired from articulation and articulation imagery in identifying the vowel being imagined during different tasks. EEG signals from chosen electrodes are decomposed using the empirical mode decomposition (EMD) method into a series of intrinsic mode functions. Brain connectivity estimators and entropy measures have been computed to analyze the functional cooperation and causal dependence between different cortical regions as well as the regularity in the signals. Using machine learning techniques such as multiclass support vector machine (MSVM) and random forest (RF), the vowels have been classified. Three different training and testing protocols (Articulation-AR, Articulation imagery-AI and Articulation vs Articulation imagery-AR vs AI) were employed for identifying the vowel being imagined of articulating. An overall classification accuracy of 80% was obtained for articulation imagery protocol which was found to be higher than the other two protocols. Also, MSVM techniques outperformed the RF technique in terms of the classification accuracy. The effect of brain connectivity estimators and machine learning techniques seems to be reliable in identifying the vowel from the subjects' thought and thereby assisting the people with speech impairment.


Subject(s)
Brain-Computer Interfaces , Algorithms , Brain/diagnostic imaging , Electroencephalography/methods , Humans , Imagery, Psychotherapy , Imagination
9.
Comput Methods Biomech Biomed Engin ; 25(10): 1111-1124, 2022 Aug.
Article in English | MEDLINE | ID: mdl-35062849

ABSTRACT

This experiment is based on the principle of traditional Chinese medicine (TCM) pulse diagnosis, the human pulse signal collected by the sensor is organized into a dataset, and the algorithms are designed to apply feature extraction. After denoising, smoothing and eliminating baseline drift of the photoelectric sensors pulse data of several groups of subjects, we designed three algorithms to describe the difference between the two-dimensional images of the pulse data of normal people and patients with chronic diseases. Convert the calculated feature values into multi-dimensional arrays, enter the decision tree (DT) to balance the differences in human physiological conditions, then train in the support vector machine kernel method (SVM-KM) classifier. Experimental results show that the application of these feature mining algorithms to disease detection greatly improves the reliability of TCM diagnosis.


Subject(s)
Algorithms , Support Vector Machine , Heart Rate , Humans , Reproducibility of Results
10.
Neurosci Res ; 176: 40-48, 2022 Mar.
Article in English | MEDLINE | ID: mdl-34508756

ABSTRACT

Motor imagery based brain computer interface (MI-BCI) has the advantage of strong independence that can rely on the spontaneous brain activity of the user to operate external devices. However, MI-BCI still has the problem of poor control effect, which requires more effective feature extraction algorithms and classification methods to extract distinctly separable features from electroencephalogram (EEG) signals. This paper proposes a novel framework based on Bispectrum, Entropy and common spatial pattern (BECSP). Here we use three methods of bispectrum in higher order spectra, entropy and CSP to extract MI-EEG signal features, and then select the most contributing features through tree-based feature selection algorithm. By comparing the classification results of SVM, Random Forest, Naive Bayes, LDA, KNN, Xgboost and Adaboost, we finally decide to use the SVM algorithm based on RBF kernel function which obtained the best result among them for classification. The proposed method is applied to the BCI competition IV data set 2a and BCI competition III data set IVa. On data set 2a, the highest accuracy on the evaluation data set reaches 85%. The experiment on data set IVa can also achieve good results. Compared with other algorithms that use the same data set, the performance of our algorithm has also been improved.


Subject(s)
Brain-Computer Interfaces , Imagination , Algorithms , Bayes Theorem , Electroencephalography/methods , Imagery, Psychotherapy , Signal Processing, Computer-Assisted
11.
Comput Methods Biomech Biomed Engin ; 25(7): 721-728, 2022 May.
Article in English | MEDLINE | ID: mdl-34866497

ABSTRACT

Today's fast paced life reports so much stress among people that it may lead to various psychological and physical illnesses. Yoga and meditation are the best strategies to reduce the effect of stress on physical and mental level without any side-effects. In this study, combined yoga and Sudarshan Kriya (SK) has been used as an alternative and complementary therapy for the management of stress. The aim of the study is to find a method to classify the meditator and non-meditator states with the best accuracy. The 50 subjects have been participating in this study and divided into two groups, i.e. study and control group. The subjects with regular practice of Yoga and SK are known as meditators and the ones without any practice of yoga and meditation were known as non-meditators. Electroencephalogram (EEG) signals were acquired from these both groups before and after 3 months. The statistical parameters were computed from these acquired EEG signals using Discrete Wavelet Transform (DWT). These extracted statistical parameters were given as input to the classifiers. The decision tree, discriminant analysis, logistic regression, Support Vector Machine (SVM), Weighted K- Nearest Neighbour (KNN) and ensemble classifiers were used for classification of meditator and non- meditator states from the acquired EEG signals. The results have demonstrated that the SVM method gives the highest classification accuracy as compared to other classifiers. The proposed method can be used as a diagnosis system in clinical practices.


Subject(s)
Meditation , Yoga , Algorithms , Brain , Electroencephalography/methods , Humans , Machine Learning , Support Vector Machine , Wavelet Analysis
12.
J Sci Food Agric ; 102(4): 1540-1549, 2022 Mar 15.
Article in English | MEDLINE | ID: mdl-34424545

ABSTRACT

BACKGROUND: Accurate and efficient evaluation of the effect of nitrogen application rate on tea quality is of great significance for nitrogen management in a tea garden. However, previous methods were all through soil or leaf sampling, using biochemical methods for laboratory testing. These methods are not only less one-time detection samples, but also time-consuming, laborious and inefficient. Therefore, the development of fast, efficient and non-destructive diagnostic methods is an important goal in this field. RESULTS: We obtained spectral information on the tea canopy using a multispectral camera carried by an unmanned aerial vehicle (UAV), and extracted the average DN value of the experimental plot by environmental visual imagery (ENVI); we finally obtained 28 spectral parameters. By analyzing the correlation between spectral parameters and ground parameters measured synchronously, five spectral parameters with high correlation were selected. Finally, the prediction models of tea nitrogen, polyphenol and amino acid content were established by using support vector machine (SVM), partial least squares and backpropagation neural network. Through modeling comparison and coefficient verification, the results show that the ground parameters measured in the laboratory were in good agreement with the results estimated by the model. The SVM model had the best performance in predicting nitrogen and tea polyphenol content, with R2  = 0.7583 and 0.7533, root mean square error of prediction (RMSEP) = 0.4086 and 0.3392, and normalized RMSEP (NRMSEP) = 1.23 and 1.28, respectively. The partial least squares regression model had the best performance in predicting amino acid content, with R2  = 0.7597, RMSEP = 0.1176 and NRMSEP = 4.10. CONCLUSION: The results show that the model based on UAV image data and machine learning algorithm can effectively detect the main biochemical components of the tea plant, which provides an important basis for tea garden management. © 2021 Society of Chemical Industry.


Subject(s)
Camellia sinensis , Nitrogen , Least-Squares Analysis , Nitrogen/analysis , Soil , Tea
13.
Spectrochim Acta A Mol Biomol Spectrosc ; 264: 120189, 2022 Jan 05.
Article in English | MEDLINE | ID: mdl-34352501

ABSTRACT

Gastrodia elata is an obligate fungal symbiont used in traditional Chinese medicine. There are currently 4 grades of the plant based on the "Commodity Specification Standard of 76 Kinds of Medicinal Materials". The traditional discrimination methods for determining the medicinal grade of G. elata powders are complex and time-consuming which are not suitable for rapid analysis. We developed a rapid analysis method for this plant using attenuated total reflection and Fourier-transform infrared spectroscopy (ATR-FTIR) together with machine learning algorithms. The original spectroscopic data was first pre-treated using the multiplicative scatter correction (MSC) method and 4 principal components were extracted using extremely randomized trees (Extra-trees) and principal component analysis (PCA) algorithms, and different kinds of classification models were established. We found that multilayer perceptron classifier (MLPC) modeling was superior to support vector machine (SVM) and resulted in validation and prediction accuracies of 99.17% and 100%, respectively and a modeling time of 2.48 s. The methods established from the current study can rapidly and effectively distinguish the 4 different types of G. elata powders and thus provides a platform for rapid quality inspection.


Subject(s)
Gastrodia , Medicine, Chinese Traditional , Principal Component Analysis , Spectroscopy, Fourier Transform Infrared , Support Vector Machine
14.
Microb Ecol ; 84(4): 1195-1211, 2022 Nov.
Article in English | MEDLINE | ID: mdl-34820729

ABSTRACT

Fertilizers and microbial communities that determine fertilizer efficiency are key to sustainable agricultural development. Sugarcane is an important sugar cash crop in China, and using bio-fertilizers is important for the sustainable development of China's sugar industry. However, information on the effects of bio-fertilizers on sugarcane soil microbiota has rarely been studied. In this study, the effects of bio-fertilizer application on rhizosphere soil physicochemical indicators, microbial community composition, function, and network patterns of sugarcane were discussed using a high-throughput sequencing approach. The experimental design is as follows: CK: urea application (57 kg/ha), CF: compound fertilizer (450 kg/ha), BF1: bio-fertilizer (1500 kg/ha of bio-fertilizer + 57 kg/ha of urea), and BF2: bio-fertilizer (2250 kg/ha of bio-fertilizer + 57 kg/ha of urea). The results showed that the bio-fertilizer was effective in increasing sugarcane yield by 3-12% compared to the CF treatment group, while reducing soil acidification, changing the diversity of fungi and bacteria, and greatly altering the composition and structure of the inter-root microbial community. Variance partitioning canonical correspondence (VPA) analysis showed that soil physicochemical variables explained 80.09% and 73.31% of the variation in bacteria and fungi, respectively. Redundancy analysis and correlation heatmap showed that soil pH, total nitrogen, and available potassium were the main factors influencing bacterial community composition, while total soil phosphorus, available phosphorus, pH, and available nitrogen were the main drivers of fungal communities. Volcano plots showed that using bio-fertilizers contributed to the accumulation of more beneficial bacteria in the sugarcane rhizosphere level and the decline of pathogenic bacteria (e.g., Leifsonia), which may slow down or suppress the occurrence of diseases. Linear discriminant analysis (LDA) and effect size analysis (LEfSe) searched for biomarkers under different fertilizer treatments. Meanwhile, support vector machine (SVM) assessed the importance of the microbial genera contributing to the variability between fertilizers, of interest were the bacteria Anaerolineace, Vulgatibacter, and Paenibacillus and the fungi Cochliobolus, Sordariales, and Dothideomycetes between CF and BF2, compared to the other genera contributing to the variability. Network analysis (co-occurrence network) showed that the network structure of bio-fertilizers was closer to the network characteristics of healthy soils, indicating that bio-fertilizers can improve soil health to some extent, and therefore if bio-fertilizers can be used as an alternative to chemical fertilizers in the future alternative, it is important to achieve green soil development and improve the climate.


Subject(s)
Microbiota , Saccharum , Fertilizers/analysis , Soil Microbiology , Soil/chemistry , Fungi/genetics , Nitrogen/analysis , Bacteria/genetics , Phosphorus , Urea , Sugars
15.
Transl Neurosci ; 12(1): 482-493, 2021 Jan 01.
Article in English | MEDLINE | ID: mdl-34900346

ABSTRACT

A brain-computer interface (BCI) based on kinesthetic motor imagery has a potential of becoming a groundbreaking technology in a clinical setting. However, few studies focus on a visual-motor imagery (VMI) paradigm driving BCI. The VMI-BCI feature extraction methods are yet to be explored in depth. In this study, a novel VMI-BCI paradigm is proposed to execute four VMI tasks: imagining a car moving forward, reversing, turning left, and turning right. These mental strategies can naturally control a car or robot to move forward, backward, left, and right. Electroencephalogram (EEG) data from 25 subjects were collected. After the raw EEG signal baseline was corrected, the alpha band was extracted using bandpass filtering. The artifacts were removed by independent component analysis. Then, the EEG average instantaneous energy induced by VMI (VMI-EEG) was calculated using the Hilbert-Huang transform (HHT). The autoregressive model was extracted to construct a 12-dimensional feature vector to a support vector machine suitable for small sample classification. This was classified into two-class tasks: visual imagination of driving the car forward versus reversing, driving forward versus turning left, driving forward versus turning right, reversing versus turning left, reversing versus turning right, and turning left versus turning right. The results showed that the average classification accuracy of these two-class tasks was 62.68 ± 5.08%, and the highest classification accuracy was 73.66 ± 6.80%. The study showed that EEG features of O1 and O2 electrodes in the occipital region extracted by HHT were separable for these VMI tasks.

16.
Front Pharmacol ; 12: 728937, 2021.
Article in English | MEDLINE | ID: mdl-34630106

ABSTRACT

An optimized support vector machine model was used to construct a lung cancer diagnosis model based on serological indicators, and a molecular regulation model of Wogonin, a component of Scutellaria baicalensis, was established. Serological indexes of patients were collected, the grid search method was used to identify the optimal penalty coefficient C and parameter g of the support vector machine model, and the benign and malignant auxiliary diagnosis model of isolated pulmonary nodules based on serological indicators was established. The regulatory network and key targets of Wogonin in lung cancer were analyzed by network pharmacology, and key targets were detected by western blot. The relationship between serological susceptibility genes and key targets of Wogonin was established, and the signaling pathway of Wogonin regulating lung cancer was constructed. After support vector machine parameter optimization (C = 90.597, g = 32), the accuracy of the model was 90.8333%, with nine false positives and two false negative cases. Ontology functional analysis of 67 common genes between Wogonin targets and lung cancer-related genes showed that the targets were associated with biological processes involved in peptidye-serine modification and regulation of protein kinase B signaling; cell components in the membrane raft and chromosomal region; and molecular function in protein serine/threonine kinase activity and heme binding. Kyoto Encyclopedia of Genes and Genomes analysis showed that the regulation pathways involved the PI3K-Akt signaling pathway, ERBB signaling pathway, and EGFR tyrosine kinase inhibitor resistance. In vitro analyses using lung cancer cells showed that Wogonin led to significantly increased levels of cleaved caspase-3 and Bad and significantly decreased Bcl-2 expression in a concentration-dependent manner. ErbB4 expression also significantly decreased in lung cancer cells after treatment with Wogonin. A regulatory network of Wogonin regulating lung cancer cell apoptosis was constructed, including the participation of serological susceptibility genes. There is a certain regulatory effect between the serological indexes that can be used in the diagnosis of lung cancer and the key targets of Chinese herbal medicine treatment of lung cancer, which provides a new idea for the diagnosis, treatment and prognosis of clinical lung cancer.

17.
J Neural Eng ; 18(4)2021 05 25.
Article in English | MEDLINE | ID: mdl-33957606

ABSTRACT

Objective.Auditory attention in complex scenarios can be decoded by electroencephalography (EEG)-based cortical speech-envelope tracking. The relative root-mean-square (RMS) intensity is a valuable cue for the decomposition of speech into distinct characteristic segments. To improve auditory attention decoding (AAD) performance, this work proposed a novel segmented AAD approach to decode target speech envelopes from different RMS-level-based speech segments.Approach.Speech was decomposed into higher- and lower-RMS-level speech segments with a threshold of -10 dB relative RMS level. A support vector machine classifier was designed to identify higher- and lower-RMS-level speech segments, using clean target and mixed speech as reference signals based on corresponding EEG signals recorded when subjects listened to target auditory streams in competing two-speaker auditory scenes. Segmented computational models were developed with the classification results of higher- and lower-RMS-level speech segments. Speech envelopes were reconstructed based on segmented decoding models for either higher- or lower-RMS-level speech segments. AAD accuracies were calculated according to the correlations between actual and reconstructed speech envelopes. The performance of the proposed segmented AAD computational model was compared to those of traditional AAD methods with unified decoding functions.Main results.Higher- and lower-RMS-level speech segments in continuous sentences could be identified robustly with classification accuracies that approximated or exceeded 80% based on corresponding EEG signals at 6 dB, 3 dB, 0 dB, -3 dB and -6 dB signal-to-mask ratios (SMRs). Compared with unified AAD decoding methods, the proposed segmented AAD approach achieved more accurate results in the reconstruction of target speech envelopes and in the detection of attentional directions. Moreover, the proposed segmented decoding method had higher information transfer rates (ITRs) and shorter minimum expected switch times compared with the unified decoder.Significance.This study revealed that EEG signals may be used to classify higher- and lower-RMS-level-based speech segments across a wide range of SMR conditions (from 6 dB to -6 dB). A novel finding was that the specific information in different RMS-level-based speech segments facilitated EEG-based decoding of auditory attention. The significantly improved AAD accuracies and ITRs of the segmented decoding method suggests that this proposed computational model may be an effective method for the application of neuro-controlled brain-computer interfaces in complex auditory scenes.


Subject(s)
Speech Perception , Speech , Acoustic Stimulation , Attention , Computer Simulation , Electroencephalography , Humans
18.
Chemosphere ; 280: 130599, 2021 Oct.
Article in English | MEDLINE | ID: mdl-33940448

ABSTRACT

A novel method of predicting heavy metal concentration in lake water by support vector machine (SVM) model was developed, combined with low-cost, easy to obtain nutrients and physicochemical indicators as input variables. 115 surface water samples were collected from 23 sites in Chaohu Lake, China, during different hydrological periods. The particulate concentrations of heavy metals in water were much higher than the dissolved concentrations. According to Nemerow pollution index (Pi), pollution degrees by Fe, V, Mn and As ranged from heavy (2 ≤ Pi < 4) to serious (Pi ≥ 4). The concentrations of most heavy metals were the highest during the medium-water period and the lowest during the dry season. Non-metric Multidimensional Scaling Analysis confirmed heavy metal concentrations had slight spatial difference but relatively large seasonal variation. Redundancy Analysis indicated the close associations of heavy metals with nutrient and physicochemical indicators. When both nutrient and physicochemical indicators were used as input variables, the simulation effects for most elements in total and particulate were relatively better than those obtained using only nutrient or only physicochemical indicators. The simulation effects for As, Ba, Fe, Ti, V and Zn were generally good, based on their training R values of 0.847, 0.828, 0.856, 0.867, 0.817 and 0.893, respectively, as well as their test R values of 0.811, 0.836, 0.843, 0.873, 0.829 and 0.826, respectively; and meanwhile, in both the training and test stages, these metals also had relatively lower errors. The spatial distribution of heavy metals in Chaohu Lake was then predicted using the fully trained SVM models.


Subject(s)
Metals, Heavy , Water Pollutants, Chemical , China , Environmental Monitoring , Geologic Sediments , Lakes , Metals, Heavy/analysis , Nitrogen/analysis , Nutrients , Phosphorus/analysis , Support Vector Machine , Water , Water Pollutants, Chemical/analysis
19.
J Agric Food Chem ; 69(29): 8298-8306, 2021 Jul 28.
Article in English | MEDLINE | ID: mdl-34043355

ABSTRACT

Conceptualization to utilize microbial composition as a prediction tool has been widely applied in human cohorts, yet the potential capacity of soil microbiota as a diagnostic tool to predict plant phenotype remains unknown. Here, we collected 130 soil samples which are 54 healthy controls and 76 ginseng rusty roots (GRRs). Alpha diversities including Shannon, Simpson, Chao1, and phylogenetic diversity were significantly decreased in GRR (P < 0.05). Moreover, we identified 30 potential biomarkers. The optimized markers were obtained through fivefold cross-validation on a support vector machine and yielded a robust area under the curve of 0.856. Notably, evaluation of multi-index classification performance including accuracy, F1-score, and Kappa coefficient also showed robust discriminative capability (90.99%, 0.903, and 0.808). Taken together, our results suggest that the disease affects the microbial community and offers the potential ability of soil microbiota to identifying farms at the risk of GRR.


Subject(s)
Microbiota , Panax , Biomarkers , Humans , Machine Learning , Phylogeny , Plant Roots , Soil
20.
Environ Sci Pollut Res Int ; 28(35): 48253-48273, 2021 Sep.
Article in English | MEDLINE | ID: mdl-33904136

ABSTRACT

The suspended sediment load (SSL) prediction is one of the most important issues in water engineering. In this article, the adaptive neuro-fuzzy interface system (ANFIS) and support vector machine (SVM) were used to estimate the SLL of two main tributaries of the Telar River placed in the north of Iran. The main Telar River had two main tributaries, namely, the Telar and the Kasilian. A new evolutionary algorithm, namely, the black widow optimization algorithm (BWOA), was used to enhance the precision of the ANFIS and SVM models for predicting daily SSL. The lagged rainfall, temperature, discharge, and SSL were used as the inputs to the models. The present study used a new hybrid Gamma test to determine the best input scenario. In the next step, the best input combination was determined based on the gamma value. In this research, the abilities of the ANFIS-BWOA and SVM-BWOA were benchmarked with the ANFIS-bat algorithm (BA), SVM-BA, SVM-particle swarm optimization (PSO), and ANFIS-PSO. The mean absolute error (MAE) of ANFIS-BWOA was 0.40%, 2.2%, and 2.5% lower than those of ANFIS-BA, ANFIS-PSO, and ANFIS models in the training level for Telar River. It was concluded that the ANFIS-BWOA had the highest value of R2 among other models in the Telar River. The MAE of the ANFIS-BWOA, SVM-BWOA, SVM-PSO, SVM-BA, and SVM models were 899.12 (Ton/day), 934.23 (Ton/day), 987.12 (Ton/day), 976.12, and 989.12 (Ton/day), respectively, in the testing level for the Kasilian River. An uncertainty analysis was used to investigate the effect of uncertainty of the inputs (first scenario) and the model parameters (the second scenario) on the accuracy of models. It was observed that the input uncertainty higher than the parameter uncertainty.


Subject(s)
Black Widow Spider , Algorithms , Animals , Geologic Sediments , Rivers , Support Vector Machine
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