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1.
Colloids Surf B Biointerfaces ; 178: 297-306, 2019 Jun 01.
Article in English | MEDLINE | ID: mdl-30878804

ABSTRACT

Hybrid supramolecular spherical nanoassembly of hen egg white lysozyme and bovine apo α lactalbumin (SNLYZ-BLA) was prepared with a mean size of ˜55.2 nm using an optimized desolvation method via chemical crosslinking. The nanoassembly, SNLYZ-BLA demonstrated dose-dependent reactive oxygen species (ROS) mediated cytotoxicity in multiple cancer cells such as MCF-7, MDA-MB231, HeLa and MG 63. It also demonstrated high loading capacity of a phytochemical based anticancer agent, curcumin (248.8 mg/g) and target-based pH-responsive in vitro drug release with around 85.8% curcumin release observed under acidic condition. Moreover, curcumin loaded SNLYZ-BLA (SNLYZ-BLA-CUR) induced cell viability reduction in all cancer cells including mouse melanoma (B16F10) by more than 90% within 24 h. Further, SNLYZ-BLA and SNLYZ-BLA-CUR when conjugated with folic acid enhanced the cytotoxicity via folate receptor-based targeting. Both drug loading and release induced conformational change and folding reconstitution of the protein nano-assembly, respectively, which made the whole system an efficient therapeutic agent that works via a dual mode of action. We demonstrated that SNLYZ-BLA and SNLYZ-BLA-CUR were highly biocompatible in vitro. Therefore, our supramolecular protein nanoassembly loaded with curcumin could emerge as a comprehensive cancer therapeutics that acts via a strategic mode of dual therapeutic mechanisms.


Subject(s)
Apoproteins/chemistry , Curcumin/chemistry , Drug Carriers/chemistry , Lactalbumin/chemistry , Muramidase/chemistry , Cell Line, Tumor , Drug Delivery Systems/methods , HeLa Cells , Humans , MCF-7 Cells , Oxidative Stress/drug effects , Protein Folding
2.
Vopr Pitan ; 88(1): 91-96, 2019.
Article in Russian | MEDLINE | ID: mdl-30811139

ABSTRACT

In this work, studies were carried out to obtain and determine the iron-binding ability of lactoferrin isolated from milk of Holstein-Friesian (black-and-white) breed of cows, which is the main stock of the Russian cattle herd (CH). Aim of the study was to obtain lactoferrin and determine its iron-binding capacity for substantiating the raw material resources of its industrial production as an easily digestible source of ferrous iron for the production of dietary supplements and/or specialized foods. MATERIAL AND METHODS: To optimize the production of lactoferrin in the conditions of dairy enterprises, we used a method of lactoferrin isolation from cow's milk in its own modification, which consisted in the degreasing of whole milk by centrifugation and double cation-exchange chromatography with successive application of the following sorbents: CM-cellulose (CM-52) and Macro-Prep High Q Support. RESULTS AND DISCUSSION: The developed modification of the method of chromatographic production of lactoferrin has shown its effectiveness and availability for production at domestic dairy enterprises. The purity of lactoferrin is about 95%, and the content is about 74 µg/cm3. Iron-binding capacity was determined in apo- and holoforms of lactoferrin. The ability of saturation of apolactoferrin with iron has been shown. CONCLUSION: The new obtained factual material allows us to express the prerequisites for further research to justify the possibility of using the iron-saturated form of hololactoferrin of cow milk of the Holstein-Frisian breed as a domestic raw material for dietary supplements and specialized foods.


Subject(s)
Apoproteins/chemistry , Apoproteins/isolation & purification , Iron/chemistry , Lactoferrin/chemistry , Lactoferrin/isolation & purification , Milk/chemistry , Animals , Cattle
3.
Biometals ; 29(6): 1019-1033, 2016 12.
Article in English | MEDLINE | ID: mdl-27757565

ABSTRACT

Translocation of bacteria, primarily Gram-negative pathogenic flora, from the intestinal lumen into the circulatory system leads to sepsis. In newborns, and especially very low birth weight infants, sepsis is a major cause of morbidity and mortality. The results of recently conducted clinical trials suggest that lactoferrin, an iron-binding protein that is abundant in mammalian colostrum and milk, may be an effective agent in preventing sepsis in newborns. However, despite numerous basic studies on lactoferrin, very little is known about how metal saturation of this protein affects a host's health. Therefore, the main objective of this study was to elucidate how iron-depleted, iron-saturated, and manganese-saturated forms of lactoferrin regulate intestinal barrier function via interactions with epithelial cells and macrophages. For these studies, a human intestinal epithelial cell line, Caco-2, was used. In this model, none of the tested lactoferrin forms induced higher levels of apoptosis or necrosis. There was also no change in the production of tight junction proteins regardless of lactoferrin metal saturation status. None of the tested forms induced a pro-inflammatory response in Caco-2 cells or in macrophages either. However, the various lactoferrin forms did effectively inhibit the pro-inflammatory response in macrophages that were activated with lipopolysaccharide with the most potent effect observed for apolactoferrin. Lactoferrin that was not bound to its cognate receptor was able to bind and neutralize lipopolysaccharide. Lactoferrin was also able to neutralize microbial-derived antigens, thereby potentially reducing their pro-inflammatory effect. Therefore, we hypothesize that lactoferrin supplementation is a relevant strategy for preventing sepsis.


Subject(s)
Intestinal Mucosa/drug effects , Intestines/drug effects , Lactoferrin/chemistry , Lactoferrin/pharmacology , Animals , Anti-Inflammatory Agents, Non-Steroidal/chemistry , Anti-Inflammatory Agents, Non-Steroidal/pharmacology , Apoproteins/chemistry , Apoptosis/drug effects , Caco-2 Cells , Cattle , Cytokines/metabolism , Epithelial Cells/drug effects , Gastroenteritis/prevention & control , Humans , Intestinal Mucosa/metabolism , Intestinal Mucosa/pathology , Iron/chemistry , Lactoferrin/metabolism , Lipopolysaccharides/pharmacology , Macrophage Activation/drug effects , Macrophages/drug effects , Macrophages/metabolism , Manganese/chemistry , Tight Junction Proteins/metabolism
4.
Sci Rep ; 6: 23126, 2016 Mar 15.
Article in English | MEDLINE | ID: mdl-26975884

ABSTRACT

A new subfamily of glycosyl hydrolase family GH13 was recently proposed for α-amylases from Anoxybacillus species (ASKA and ADTA), Geobacillus thermoleovorans (GTA, Pizzo, and GtamyII), Bacillus aquimaris (BaqA), and 95 other putative protein homologues. To understand this new GH13 subfamily, we report crystal structures of truncated ASKA (TASKA). ASKA is a thermostable enzyme capable of producing high levels of maltose. Unlike GTA, biochemical analysis showed that Ca(2+) ion supplementation enhances the catalytic activities of ASKA and TASKA. The crystal structures reveal the presence of four Ca(2+) ion binding sites, with three of these binding sites are highly conserved among Anoxybacillus α-amylases. This work provides structural insights into this new GH13 subfamily both in the apo form and in complex with maltose. Furthermore, structural comparison of TASKA and GTA provides an overview of the conformational changes accompanying maltose binding at each subsite.


Subject(s)
Anoxybacillus/enzymology , Bacterial Proteins/chemistry , Maltose/chemistry , alpha-Amylases/chemistry , Apoproteins/chemistry , Binding Sites , Calcium/chemistry , Crystallization , Crystallography, X-Ray , Models, Molecular , Protein Conformation
5.
Biometals ; 26(6): 887-96, 2013 Dec.
Article in English | MEDLINE | ID: mdl-23917727

ABSTRACT

The stoichiometric analysis of the metal induced Metallothionein (MT) is pertinent for understanding the metal-MT interactions. Despite innumerable publications on MT, the literature addressing these aspects is limited. To bridge this gap, PIXE and ESI-MS analysis of the commercial rabbit liver MT1 (an isoform of MT), zinc induced isolated rat liver MT1, apo and Arsenic substituted rabbit liver MT1 have been carried out. These techniques in combination provide information about number and the signature of all the metal ions bound to MT. By using ESI-MS in the rabbit MT1, ions of Zn n MT1 (n = 0, 1, 4, 5, 6, 7) whereas, in rat MT1, the Zn1MT1 and Zn5MT1 ions are observed. PIXE analysis shows that some copper along with zinc is also present in the rabbit as well as rat MT1 which could not be assessed with ESI-MS. During As metallation reaction with rabbit MT1, with increase in arsenic concentration, the amount of arsenic bound to MT1 also increases, though not proportionally. The presence of both Zn and Cu in MT1 on Zn supplementation can be related to the role of MT in Zn and Cu homeostasis. Further, the presence of partially metallated MT1 suggests that MT1 may donate fractional amount of metal from it's fully metallated form to other proteins where Zn acts as a cofactor.


Subject(s)
Apoproteins/chemistry , Arsenic/chemistry , Copper/chemistry , Metallothionein/chemistry , Zinc/chemistry , Animals , Apoproteins/isolation & purification , Binding Sites , Liver/chemistry , Liver/metabolism , Male , Metallothionein/isolation & purification , Protein Binding , Rabbits , Rats , Rats, Wistar , Species Specificity , Spectrometry, Mass, Electrospray Ionization , Spectrometry, X-Ray Emission
6.
Anal Bioanal Chem ; 405(15): 5191-200, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23604471

ABSTRACT

Lactoferrin is considered as a part of the innate immune system that plays a crucial role in preventing bacterial growth, mostly via an iron sequestration mechanism. Recent data show that bovine lactoferrin prevents late-onset sepsis in preterm very low birth weight neonates by serving as an iron chelator for some bacterial strains; thus, it is very important to control the iron saturation level during diet supplementation. An accurate estimation of lactoferrin iron saturation is essential not only because of its clinical applications but also for a wide range of biochemical experiments. A comprehensive method for the quantification of iron saturation in lactoferrin preparations was developed to obtain a calibration curve enabling the determination of iron saturation levels relying exclusively on the defined ratio of absorbances at 280 and 466 nm (A(280/466)). To achieve this goal, selected techniques such as spectrophotometry, ELISA, and ICP-MS were combined. The ability to obtain samples of lactoferrin with determination of its iron content in a simple and fast way has been proven to be very useful. Furthermore, a similar approach could easily be implemented to facilitate the determination of iron saturation level for other metalloproteins in which metal binding results in the appearance of a distinct band in the visible part of the spectrum.


Subject(s)
Iron/chemistry , Lactoferrin/chemistry , Apoproteins/chemistry , Chromatography/methods
7.
Eur Biophys J ; 41(7): 615-27, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22722892

ABSTRACT

Myoglobin is an alpha-helical globular protein containing two highly conserved tryptophanyl residues at positions 7 and 14 in the N-terminal region. The simultaneous substitution of the two residues increases the susceptibility of the polypeptide chain to misfold, causing amyloid aggregation under physiological condition, i.e., neutral pH and room temperature. The role played by tryptophanyl residues in driving the folding process has been investigated by examining three mutated apomyoglobins, i.e., W7F, W14F, and the amyloid-forming mutant W7FW14F, by an integrated approach based on far-ultraviolet (UV) circular dichroism (CD) analysis, fluorescence spectroscopy, and complementary proteolysis. Particular attention has been devoted to examine the conformational and dynamic properties of the equilibrium intermediate formed at pH 4.0, since it represents the early organized structure from which the native fold originates. The results show that the W → F substitutions at position 7 and 14 differently affect the structural organization of the AGH subdomain of apomyoglobin. The combined effect of the two substitutions in the double mutant impairs the formation of native-like contacts and favors interchain interactions, leading to protein aggregation and amyloid formation.


Subject(s)
Amyloid/chemistry , Apoproteins/chemistry , Models, Molecular , Myoglobin/chemistry , Phenylalanine/chemistry , Tryptophan/chemistry , Amino Acid Sequence , Animals , Apoproteins/genetics , Molecular Sequence Data , Mutation, Missense , Myoglobin/genetics , Phenylalanine/genetics , Protein Conformation , Protein Folding , Spectrum Analysis , Tryptophan/genetics , Whales
8.
J Food Sci ; 76(6): C817-23, 2011 Aug.
Article in English | MEDLINE | ID: mdl-22417479

ABSTRACT

UNLABELLED: Alpha-lactalbumin is an important dairy protein ingredient, and has been widely used in high-protein foods such as infant formula and nutritional bars for its nutritional and functional properties. The purpose of this study was to investigate the moisture-induced aggregation of alpha-lactalbumin in premixed protein dough model systems, and to illustrate the effects of temperature, cations, and pH on the progress of protein aggregation. Our results suggested that storage temperature was a critical factor for protein aggregation in model systems, and the formation of protein aggregates became faster with increases in storage temperature. Calcium significantly improved the thermal stability of alpha-lactalbumin and slowed down the formation of protein aggregates. The increases in pH accelerated the aggregation of alpha-lactalbumin. Our results also suggested that the formation of intermolecular disulfide bonds together with noncovalent interactions are the main mechanisms resulting in the moisture-induced aggregation of alpha-lactalbumin in model systems. PRACTICAL APPLICATION: Alpha-lactalbumin is an important dairy protein ingredient, and has been widely used in high-protein foods such as infant formula and nutritional bars for its nutritional and functional properties. Our results suggested low storage temperature, the presence of calcium and low pH condition can make high-protein food products containing alpha-lactalbumin more stable.


Subject(s)
Bread/analysis , Calcium Chloride/chemistry , Food Preservatives/chemistry , Food Storage , Lactalbumin/chemistry , Magnesium Chloride/chemistry , Water/chemistry , Apoproteins/chemistry , Calcium/analysis , Calorimetry, Differential Scanning , Food, Fortified/analysis , Hot Temperature/adverse effects , Hydrogen-Ion Concentration , Magnesium/analysis , Models, Chemical , Molecular Weight , Osmolar Concentration , Protein Denaturation/drug effects , Solubility , Time Factors , Water/analysis
9.
J Am Soc Mass Spectrom ; 21(9): 1534-46, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20541435

ABSTRACT

Nine replicate samples of peptides from soybean leaves, each spiked with a different concentration of bovine apotransferrin peptides, were analyzed on a mass spectrometer using multidimensional protein identification technology (MudPIT). Proteins were detected from the peptide tandem mass spectra, and the numbers of spectra were statistically evaluated for variation between samples. The results corroborate prior knowledge that combining spectra from replicate samples increases the number of identifiable proteins and that a summed spectral count for a protein increases linearly with increasing molar amounts of protein. Furthermore, statistical analysis of spectral counts for proteins in two- and three-way comparisons between replicates and combined replicates revealed little significant variation arising from run-to-run differences or data-dependent instrument ion sampling that might falsely suggest differential protein accumulation. In these experiments, spectral counting was enabled by PANORAMICS, probability-based software that predicts proteins detected by sets of observed peptides. Three alternative approaches to counting spectra were also evaluated by comparison. As the counting thresholds were changed from weaker to more stringent, the accuracy of ratio determination also changed. These results suggest that thresholds for counting can be empirically set to improve relative quantitation. All together, the data confirm the accuracy and reliability of label-free spectral counting in the relative, quantitative analysis of proteins between samples.


Subject(s)
Peptide Mapping/methods , Plant Proteins/chemistry , Proteomics/methods , Amino Acid Sequence , Animals , Apoproteins/chemistry , Artifacts , Artificial Intelligence , Cattle , Databases, Protein , Molecular Sequence Data , Pattern Recognition, Automated , Peptide Mapping/statistics & numerical data , Plant Extracts/chemistry , Plant Leaves/chemistry , Proteomics/statistics & numerical data , Reproducibility of Results , Sequence Analysis, Protein , Software , Glycine max/chemistry , Transferrin/chemistry
10.
Mol Biol Rep ; 37(7): 3259-64, 2010 Oct.
Article in English | MEDLINE | ID: mdl-19876765

ABSTRACT

Rieske protein gene in the Pacific oyster Crassostrea gigas was obtained by in silico cloning for the first time, and its expression profiles and subcellular localization were determined, respectively. The full-length cDNA of Cgisp is 985 bp in length and contains a 5'- and 3'-untranslated regions of 35 and 161 bp, respectively, with an open reading frame of 786 bp encoding a protein of 262 amino acids. The predicted molecular weight of 30 kDa of Cgisp protein was verified by prokaryotic expression. Conserved Rieske [2Fe-2S] cluster binding sites and highly matched-pair tertiary structure with 3CWB_E (Gallus gallus) were revealed by homologous analysis and molecular modeling. Eleven putative SNP sites and two conserved hexapeptide sequences, box I (THLGC) and II (PCHGS), were detected by multiple alignments. Real-time PCR analysis showed that Cgisp is expressed in a wide range of tissues, with adductor muscle exhibiting the top expression level, suggesting its biological function of energy transduction. The GFP tagging Cgisp indicated a mitochondrial localization, further confirming its physiological function.


Subject(s)
Apoproteins/genetics , Apoproteins/metabolism , Computational Biology/methods , Crassostrea/genetics , Electron Transport Complex III/genetics , Electron Transport Complex III/metabolism , Animals , Apoproteins/chemistry , Cloning, Molecular , DNA, Complementary/genetics , Electron Transport Complex III/chemistry , Electrophoresis, Polyacrylamide Gel , Escherichia coli/metabolism , Gene Expression Profiling , Gene Expression Regulation , Green Fluorescent Proteins/metabolism , Models, Molecular , Molecular Sequence Data , Pacific Ocean , Protein Transport , RNA, Messenger/genetics , RNA, Messenger/metabolism , Recombinant Proteins/metabolism , Structural Homology, Protein , Subcellular Fractions/metabolism
11.
Chem Res Toxicol ; 22(9): 1613-21, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19678663

ABSTRACT

Ab initio quantum mechanical computational studies for the structure and IR spectra of the uranyl complex with human serum apotransferrin (TF) protein are carried out to model uranyl intake into the human cell through endocytosis and formation of a coordination complex with the protein binding sites. The computed IR spectra and structure of the uranyl-protein complex facilitate interpretation of the observed spectra and confirm the primary binding sites of the transferrin protein with the uranyl ion. Our computed equilibrium geometry and the IR spectra of the uranyl-TF complex reveal that uranyl ion is bound to two tyrosines, one aspartate group, and one carbonate ion. Our IR spectra indicate that histidine is not involved in binding to uranyl with transferrin protein. Our computations reveal a short, strong hydrogen bond, which could play an important role in the stabilization and formation of the uranyl-TF complex. Computed Laplacian charge plots indicate high chemical reactivity on this complex as both an electrophile and a nucleophile, facilitating binding to different receptors and thus entry into a number of target organs and the blood-brain barrier. The Mulliken charge density plots and the three-dimensional charge density plots suggest a donor-acceptor mechanism in the complex formation.


Subject(s)
Apoproteins/chemistry , Transferrin/chemistry , Uranium/chemistry , Apoproteins/metabolism , Binding Sites , Blood-Brain Barrier/metabolism , Humans , Hydrogen Bonding , Protein Binding , Protein Structure, Tertiary , Spectrophotometry, Infrared , Transferrin/metabolism
12.
Biophys J ; 97(2): 609-17, 2009 Jul 22.
Article in English | MEDLINE | ID: mdl-19619476

ABSTRACT

With Cd and Zn metal ions removed from the native rabbit-liver metallothionein upon unfolding, Cu-modified metallothioneins (Cu-MTs) were obtained during refolding in solutions containing Cu(I) or Cu(II) ions. X-ray absorption near-edge spectroscopic results confirm the respectively assigned oxidation states of the copper ions in Cu(I)-MT and Cu(II)-MT. Global and local structures of the Cu-MTs were subsequently characterized by anomalous small-angle x-ray scattering (ASAXS) and extended x-ray absorption fine structure. Energy-dependent ASAXS results indicate that the morphology of Cu(II)-MT resembles that of the native MT, whereas Cu(I)-MT forms oligomers with a higher copper content. Both dummy-residue simulation and model-shape fitting of the ASAXS data reveal consistently rodlike morphology for Cu(II)-MT. Clearly identified Cu-S, Cu-O, and Cu-Cu contributions in the extended x-ray absorption fine structure analysis indicate that both Cu(I) and Cu(II) ions are bonded with O and S atoms of nearby amino acids in a four-coordination environment, forming metal clusters smaller than metal thiolate clusters in the native MT. It is demonstrated that a combination of resonant x-ray scattering and x-ray absorption can be particularly useful in revealing complementary global and local structures of metalloproteins due to the atom specific characteristics of the two techniques.


Subject(s)
Copper/chemistry , Copper/metabolism , Metallothionein/chemistry , Metallothionein/metabolism , X-Ray Diffraction , Absorption , Animals , Apoproteins/chemistry , Apoproteins/metabolism , Models, Molecular , Oxidation-Reduction , Protein Conformation , Protein Denaturation , Protein Renaturation , Rabbits , Scattering, Small Angle , Solutions
13.
Assay Drug Dev Technol ; 6(6): 787-93, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19090690

ABSTRACT

A luminescence assay using a new plate reader, the LumiLux (PerkinElmer, Waltham, MA), has been validated for high-throughput screening (HTS). In this study, we compared the aequorin luminescence-based calcium mobilization assay to the fluorescence-based calcium assay. A cell line stably co-expressing apo-aequorin, a chimeric G-protein, and a G-protein-coupled dopamine receptor was used to screen a collection of 8,106 compounds using the Hamamatsu Photonics (Bridgewater, NJ) FDSS6000 and LumiLux as the plate readers. The assay parameters evaluated included hit rate correlation, signal-to-noise ratio, and overall assay performance calculated by Z and standard deviation. The average Z values and hit rates were comparable between assay platforms;however, the standard deviation for the agonist aequorin assay was significantly smaller. There was also a significant decrease in the number of false-positives with the aequorin assay. These results suggest that the aequorin assay in combination with the new plate reader, LumiLux, provides a simple, cost-effective, robust, and sensitive assay for HTS


Subject(s)
Aequorin/chemistry , Calcium/analysis , Drug Evaluation, Preclinical/methods , Luminescent Agents/chemistry , Luminescent Measurements/methods , Receptors, Calcium-Sensing/analysis , Aniline Compounds/chemistry , Animals , Apoproteins/analysis , Apoproteins/chemistry , CHO Cells , Calcium/metabolism , Cluster Analysis , Cricetinae , Cricetulus , Dopamine Antagonists/analysis , Dopamine Antagonists/classification , Dopamine Antagonists/pharmacology , Dose-Response Relationship, Drug , Drug Evaluation, Preclinical/economics , False Positive Reactions , Fluorescence , Fluorescent Dyes/chemistry , Imidazoles/chemistry , Inhibitory Concentration 50 , Kinetics , Luminescent Measurements/economics , Pyrazines/chemistry , Receptors, Calcium-Sensing/metabolism , Receptors, Dopamine , Robotics/economics , Software , Xanthenes/chemistry
14.
J Biol Inorg Chem ; 13(5): 801-12, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18389296

ABSTRACT

In contrast with the paradigmatic mammalian metallothioneins (MTs), mollusc MT systems consist at least of a high-cadmium induced form, possibly involved in detoxification, and another isoform either constitutive or regulated by essential metals and probably associated with housekeeping metabolism. With the aim of providing a deeper characterization of the coordination features of a molluscan MT peptide of the latter kind, we have analyzed here the metal-binding abilities of the recombinant MeMT-10-IV isoform of Mytilus edulis (MeMT). Also, comparison with other MTs of this type has been undertaken. A synthetic complementary DNA was constructed, cloned and expressed into two Escherichia coli systems. Upon zinc coordination, MeMT folds in vivo into highly chiral and stable Zn(7) complexes, with an exceptional reluctance to fully substitute cadmium(II) and/or copper(I) for zinc(II). In vivo cadmium binding leads to homometallic Cd(7) complexes that structurally differ from any of the in vitro prepared Cd(7) complexes. Homometallic Cu-MeMT can only be obtained in vitro from Zn(7)-MeMT after a great molar excess of copper(I) has been added. In vivo, two different heterometallic Zn,Cu-MeMT complexes are recovered, which nicely correspond to two distinct stages of the in vitro zinc/copper replacement. These MeMT metal-binding features are consistent with a physiological role related to basal/housekeeping metal, mainly zinc, metabolism, and confirm the correspondence between the MeMT gene response pattern and the functional properties of the encoded protein.


Subject(s)
Metallothionein/metabolism , Metals/metabolism , Mytilus edulis/metabolism , Amino Acid Sequence , Animals , Apoproteins/chemistry , Cadmium/metabolism , Circular Dichroism , Copper/metabolism , Hydrogen-Ion Concentration , Metallothionein/chemistry , Molecular Sequence Data , Molecular Weight , Mytilus edulis/chemistry , Plasmids/genetics , Protein Binding , Recombinant Proteins/metabolism , Spectrometry, Mass, Electrospray Ionization , Zinc/metabolism
15.
FEBS Lett ; 581(22): 4217-22, 2007 Sep 04.
Article in English | MEDLINE | ID: mdl-17706648

ABSTRACT

We exploit the biochemical and sequence similarity between Staphylococcus aureus Sav1866 and P-glycoprotein to develop a homology model of P-glycoprotein representing an ATP-bound state, which captures the major features of the low-resolution EM structure and is consistent with cysteine mutagenesis studies. Using insights from the MalK crystal structures and BtuCD simulations, we model two nucleotide-free conformations. Conformational changes are characterized by pincering rigid-body rotations of the nucleotide-binding domains, inducing transmembrane domain reorganizations which correspond to the two lowest frequency normal modes of the protein. These conformations (see supplementary material) may characterize some of the major steps in the nucleotide catalytic cycle.


Subject(s)
ATP Binding Cassette Transporter, Subfamily B, Member 1/chemistry , ATP-Binding Cassette Transporters/chemistry , Adenosine Triphosphate/metabolism , Apoproteins/chemistry , Bacterial Proteins/chemistry , Models, Molecular , Sequence Homology, Amino Acid , Catalysis , Humans , Hydrophobic and Hydrophilic Interactions , Protein Structure, Secondary , Protein Structure, Tertiary , Solvents , Staphylococcus aureus/chemistry
16.
Biochemistry ; 46(8): 2215-26, 2007 Feb 27.
Article in English | MEDLINE | ID: mdl-17266333

ABSTRACT

It has been established that transferrin binds a variety of metals. These include toxic uranyl ions which form rather stable uranyl-transferrin derivatives. We determined the extent to which the iron binding sites might accommodate the peculiar topographic profile of the uranyl ion and the consequences of its binding on protein conformation. Indeed, metal intake via endocytosis of the transferrin/transferrin receptor depends on the adequate coordination of the metal in its site, which controls protein conformation and receptor binding. Using UV-vis and Fourier transform infrared difference spectroscopy coupled to a microdialysis system, we showed that at both metal binding sites two tyrosines are uranyl ligands, while histidine does not participate with its coordination sphere. Analysis by circular dichroism and differential scanning calorimetry (DSC) showed major differences between structural changes associated with interactions of iron or uranyl with apotransferrin. Uranyl coordination reduces the level of protein stabilization compared to iron, but this may be simply related to partial lobe closure. The lack of interaction between uranyl-TF and its receptor was shown by flow cytometry using Alexa 488-labeled holotransferrin. We propose a structural model summarizing our conclusion that the uranyl-TF complex adopts an open conformation that is not appropriate for optimal binding to the transferrin receptor.


Subject(s)
Apoproteins/chemistry , Apoproteins/metabolism , Transferrin/chemistry , Transferrin/metabolism , Uranium Compounds/metabolism , Uranium/toxicity , Binding Sites , Calorimetry, Differential Scanning , Circular Dichroism , Humans , Iron/metabolism , K562 Cells , Microdialysis , Models, Molecular , Protein Binding , Receptors, Transferrin/metabolism , Spectroscopy, Fourier Transform Infrared , Spectrum Analysis , Thermodynamics , Tyrosine/metabolism , Uranium Compounds/chemistry
17.
J Mol Biol ; 357(3): 842-57, 2006 Mar 31.
Article in English | MEDLINE | ID: mdl-16460756

ABSTRACT

Dodecin is a small dodecameric flavoprotein from Halobacterium salinarum that contains two flavins stacked between two tryptophan residues to form an aromatic tetrade. The functional properties of heterologously expressed dodecin were investigated by fluorescence spectroscopy, which allowed the determination of dissociation constants for a number of protein-ligand complexes. The values obtained were in the nanomolar to micromolar range and correlate positively with the ligand size. These data were supplemented by X-ray crystal structures of the apododecin and holocomplexes with lumichrome, lumiflavin, riboflavin and FMN at resolutions between 1.55 to 1.95 A to unravel a gating mechanism as the structural basis for the preferential binding of the small ligands lumichrome and lumiflavin. The detailed analysis of the dodecin manifold for preferential binding of lumichrome and lumiflavin provides insight on a subatom level into a protein's strategy to gain selectivity for low molecular mass compounds by steric restrictions rather than specific interactions. Investigations on the ligand composition of a wild-type dodecin crystal (1.32 A resolution) support conclusions of functional and structural investigations on heterologously expressed dodecin, and strongly suggest that lumichrome, a molecule associated with the flavin metabolism, is a ligand of dodecin in vivo. Studies on mutant protein and a Halorhodospira halophila homologue spread the idea of a lumichrome binding system as a possible "waste"-trapping device, widely distributed in prokaryotes.


Subject(s)
Archaeal Proteins/metabolism , Flavins/metabolism , Flavoproteins/metabolism , Amino Acid Sequence , Apoproteins/chemistry , Apoproteins/metabolism , Archaeal Proteins/chemistry , Crystallography, X-Ray , Flavoproteins/chemistry , Halobacterium salinarum/chemistry , Halobacterium salinarum/metabolism , Halorhodospira halophila/chemistry , Halorhodospira halophila/metabolism , Hydrocarbons, Aromatic/metabolism , Ligands , Molecular Sequence Data , Multigene Family , Protein Binding , Sequence Alignment , Sequence Homology, Amino Acid , Spectrometry, Fluorescence
18.
Biochemistry ; 44(23): 8470-8, 2005 Jun 14.
Article in English | MEDLINE | ID: mdl-15938636

ABSTRACT

Iron regulatory proteins (IRPs) regulate iron metabolism in mammalian cells. We used biophysical techniques to examine the solution properties of apo-IRP1 and apo-IRP2 and the interaction with their RNA ligand, the iron regulatory element (IRE). Sedimentation velocity and equilibrium experiments have shown that apo-IRP1 exists as an equilibrium mixture of monomers and dimers in solution, with an equilibrium dissociation constant in the low micromolar range and slow kinetic exchange between the two forms. However, only monomeric IRP1 is observed in complex with IRE. In contrast, IRP2 exists as monomer in both the apo-IRP2 form and in the IRP2/IRE complex. For both IRPs, sedimentation velocity and dynamic light-scattering experiments show a decrease of the Stokes radius upon binding of IRE. This conformational change was also observed by circular dichroism. Studies with an RNA molecule complementary to IRE indicate that, although specific base interactions can increase the stability of the protein/RNA complex, they are not essential for inducing this conformational change. The dynamic change of the IRP between different oligomeric and conformational states induced by interaction with IRE may play a role in the iron regulatory functions of IRPs.


Subject(s)
Iron Regulatory Protein 1/chemistry , Iron Regulatory Protein 1/metabolism , Iron Regulatory Protein 2/chemistry , Iron Regulatory Protein 2/metabolism , Picolines/chemistry , Picolines/metabolism , Response Elements , Apoproteins/chemistry , Apoproteins/metabolism , Centrifugation, Density Gradient , Circular Dichroism , Dimerization , Humans , Ligands , Light , Pichia/genetics , Protein Binding , Protein Conformation , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Scattering, Radiation , Solutions
19.
J Biol Chem ; 279(26): 27502-10, 2004 Jun 25.
Article in English | MEDLINE | ID: mdl-15075318

ABSTRACT

The Atx1 copper metallochaperone from Synechocystis PCC 6803, ScAtx1, interacts with two P(1)-type copper ATPases to supply copper proteins within intracellular compartments, avoiding ATPases for other metals en route. Here we report NMR-derived solution structures for ScAtx1. The monomeric apo form has a betaalphabetabetaalpha fold with backbone motions largely restricted to loop 1 containing Cys-12 and Cys-15. The tumbling rate of Cu(I)ScAtx1 (0.1-0.8 mm) implies dimers. Experimental restraints are satisfied by symmetrical dimers with Cys-12 or His-61, but not Cys-15, invading the copper site of the opposing subunit. A full sequence of copper ligands from the cell surface to thylakoid compartments is proposed, considering in vitro homodimer liganding to mimic in vivo liganding in ScAtx1-ATPase heterodimers. A monomeric high resolution structure for Cu(I)ScAtx1, with Cys-12, Cys-15, and His-61 as ligands, is calculated without violations despite the rotational correlation time. (2)J(NH) couplings in the imidazole ring of His-61 establish coordination of N(epsilon2) to copper. His-61 is analogous to Lys-65 in eukaryotic metallochaperones, stabilizing Cu(I)S(2) complexes but by binding Cu(I) rather than compensating charge. Cys-Cys-His ligand sets are an emergent theme in some copper metallochaperones, although not in related Atx1, CopZ, or Hah1. Surface charge (Glu-13) close to the metal-binding site of ScAtx1 is likely to support interaction with complementary surfaces of copper-transporting ATPases (PacS-Arg-11 and CtaA-Lys-14) but to discourage interaction with zinc ATPase ZiaA and so inhibit aberrant formation of copper-ZiaA complexes.


Subject(s)
Cyanobacteria/chemistry , Metalloproteins/chemistry , Molecular Chaperones/chemistry , Apoproteins/chemistry , Apoproteins/genetics , Apoproteins/metabolism , Copper/chemistry , Copper/metabolism , Cyanobacteria/genetics , Dimerization , Metalloproteins/genetics , Metalloproteins/metabolism , Models, Molecular , Molecular Chaperones/genetics , Molecular Chaperones/metabolism , Nuclear Magnetic Resonance, Biomolecular , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Solutions , Static Electricity
20.
Atherosclerosis ; 172(1): 55-61, 2004 Jan.
Article in English | MEDLINE | ID: mdl-14709357

ABSTRACT

Several studies have demonstrated that the isoflavone genistein exerts a protective effect against lipid peroxidation of low density lipoproteins (LDL). Aim of our study was to investigate whether genistein protects high density lipoproteins (HDL), isolated from normolipemic subjects, against Cu(++)-induced lipid peroxidation. Our results demonstrated that genistein exerts an inhibitory effect against Cu(++)-induced lipid peroxidation of HDL, as shown by the lower increase in the levels of conjugated dienes in lipoproteins oxidized after preincubation with different concentrations of genistein (0.5-2.5microM). Moreover the analysis of fluorescence emission spectra of tryptophan (Trp) and Laurdan (6-dodecanoyl-2-dimethyl-aminonaphthalene) demonstrated that genistein prevents the alterations of apoprotein structure and physico-chemical properties, associated with Cu(++)-triggered lipid peroxidation of lipoproteins. The protective effect exerted by genistein against oxidative damage of lipoproteins was realized at concentrations similar to those observed in plasma of human subjects consuming a traditional soy diet or receiving a soy supplement. Therefore, we suggested that antioxidant activity exerted by genistein against lipid peroxidation of HDL in vitro could be of physiological relevance.


Subject(s)
2-Naphthylamine/analogs & derivatives , Antioxidants/pharmacology , Copper/pharmacology , Genistein/pharmacology , Lipid Peroxidation/drug effects , Lipoproteins, HDL/metabolism , 2-Naphthylamine/analysis , Apoproteins/chemistry , Copper/antagonists & inhibitors , Fluorescence , Humans , In Vitro Techniques , Laurates/analysis , Soy Foods , Tryptophan/analysis
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