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1.
Methods Mol Biol ; 2122: 127-139, 2020.
Article in English | MEDLINE | ID: mdl-31975300

ABSTRACT

Transcriptomic studies have proven powerful and effective as a tool to study the molecular underpinnings of plant development. Still, it remains challenging to disentangle cell- or tissue-specific transcriptomes in complex structures like the plant seed. In particular, the embryo of flowering plants is embedded in the endosperm, a nurturing tissue, which, in turn, is enclosed by the maternal seed coat. Here, we describe laser-assisted microdissection (LAM) to isolate highly pure embryo tissue from whole seeds. This technique is applicable to virtually any plant seed, and we illustrate the use of LAM to isolate embryos from species of the Boechera and Solanum genera. LAM is a tool that will greatly help to increase the repertoires of tissue-specific transcriptomes, including those of embryos and parts thereof, in nonmodel plants.


Subject(s)
Brassicaceae/genetics , Gene Expression Profiling/methods , Laser Capture Microdissection/methods , Seeds/genetics , Solanum/genetics , Brassicaceae/embryology , Brassicaceae/ultrastructure , Gene Expression Regulation, Plant , Genes, Plant , Microscopy/methods , Seeds/embryology , Seeds/ultrastructure , Solanum/embryology , Solanum/ultrastructure , Transcriptome
2.
Methods Mol Biol ; 1459: 91-101, 2016.
Article in English | MEDLINE | ID: mdl-27665553

ABSTRACT

In the Brassicaceae, the dry stigma is an initial barrier to pollen acceptance as the stigmatic papillae lack surface secretions, and consequently rapid cellular responses are required to accept compatible pollen. Regulated secretion with secretory vesicles or multivesicular bodies is initiated in the stigmatic papillae towards the compatible pollen grain. In self-incompatible species, this basal compatible pollen response is superseded by the self-incompatibility signaling pathway where the secretory organelles are found in autophagosomes and vacuole for destruction. In this chapter, we describe a detailed protocol using the Transmission Electron Microscope to document the rapid cellular changes that occur in the stigmatic papillae in response to compatible versus self-incompatible pollen, at the pollen-stigma interface.


Subject(s)
Microscopy, Electron, Transmission , Pollen/physiology , Pollen/ultrastructure , Pollination , Arabidopsis/physiology , Arabidopsis/ultrastructure , Autophagy , Brassicaceae/physiology , Brassicaceae/ultrastructure , Exosomes/metabolism , Exosomes/ultrastructure , Multivesicular Bodies/metabolism
3.
Tsitol Genet ; 47(1): 26-36, 2013.
Article in English | MEDLINE | ID: mdl-23427609

ABSTRACT

Cytological studies have been carried out on 12 species of Brassicaceae Burn. on population basis from different geographical areas of Kashmir and Himachal Pradesh in the Western Himalayas. Variable chromosome reports for Barbaraea intermedia (n = 16), Cardamine loxostemonoides (n = 8), Nasturtium officinale (n = 8), Sisymbrium orientale (n = 14) on world-wide basis have been added to the previous reports of these species. The chromosome numbers in seven species as Barbaraea intermedia (n = 8), B. vulgaris (n = 8), Capsella bursa-pastoris (n = 8), Descuriania sophia (n = 10), Rorippa islandica (n = 8), Sisymbrium strictum (n = 7) and Thlaspi alpestre (n = 7) have been worked out for the first time from India. The meiotic course in the populations of seven species such as Barbaraea intermedia, Capsella bursa-pastoris, Coronopus didymus, Descuriania sophia, Nasturtium officinale, Sisymbrium orientale and S. strictum varies from normal to abnormal while all the populations of two species Barbaraea vulgaris and Sisymbrium irio show abnormal meiotic course. Meiotic abnormalities are in the form of cytomixis, chromosomal stickiness, unoriented bivalents, inter-bivalent connections, formation of laggards and bridges, all resulting into abnormal microsporogenesis. Heterogenous sized fertile pollen grains and reduced reproductive potentialities have invariably been observed in all the meiotically abnormal populations. However, the meiotic course in all the populations of Cardamine loxostemonoides, Rorippa islandica and Thalspi alpestre is found to be normal with high pollen fertility.


Subject(s)
Brassicaceae/ultrastructure , Chromosome Aberrations , Chromosomes, Plant , Gametogenesis, Plant/genetics , Pollen/ultrastructure , Brassicaceae/classification , Brassicaceae/genetics , Fertility , India , Karyotyping , Meiosis/genetics , Microscopy , Pollen/genetics
4.
Anal Bioanal Chem ; 404(5): 1277-85, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22392379

ABSTRACT

Selenium hyperaccumulator Stanleya pinnata, Colorado ecotype, was supplied with water-soluble and biologically available selenate or selenite. Selenium distribution and tissue speciation were established using X-ray microscopy (micro-X-ray fluorescence and transmission X-ray microscopy) in two dimensions and three dimensions. The results indicate that S. pinnata tolerates, accumulates, and volatilizes significant concentrations of selenium when the inorganic form supplied is selenite and may possess novel metabolic capacity to differentiate, metabolize, and detoxify selenite concentrations surpassing field concentrations. The results also indicate that S. pinnata is a feasible candidate to detoxify selenium-polluted soil sites, especially locations with topsoil polluted with soluble and biologically available selenite.


Subject(s)
Brassicaceae/metabolism , Selenium/analysis , Selenium/metabolism , Biodegradation, Environmental , Brassicaceae/ultrastructure , Fluorescence , Microscopy/methods , Plant Roots/metabolism , Plant Roots/ultrastructure , Selenic Acid , Selenium Compounds/metabolism , Synchrotrons , X-Rays
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